Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
21:33:41 (717543): wrapper (7.7.26015): starting
21:33:41 (717543): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 21:33:41] Arguments: --nthreads 12
[2025-10-12 21:33:41] Threads: 12
[2025-10-12 21:33:41] Checking for CVMFS
[2025-10-12 21:33:41] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 21:33:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 21:33:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 21:33:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 21:33:41] 2.13.2.0 572020 347 57884 151635 2 56 2642105 4097024 0 130560 0 412305 99.989 19771 7577 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://188.184.28.244:3128 1
[2025-10-12 21:33:41] CVMFS is ok
[2025-10-12 21:33:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 21:33:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 21:33:41] Further information can be found at the LHC@home message board.
[2025-10-12 21:33:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 21:33:41] Checking for apptainer binary...
[2025-10-12 21:33:41] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin)
[2025-10-12 21:33:41] apptainer is not installed, using version from CVMFS
[2025-10-12 21:33:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 21:33:42] pckelar8.cern.ch
[2025-10-12 21:33:42] apptainer works
[2025-10-12 21:33:42] Set ATHENA_PROC_NUMBER=12
[2025-10-12 21:33:42] Set ATHENA_CORE_NUMBER=12
[2025-10-12 21:33:42] Starting ATLAS job with PandaID=6839870956
[2025-10-12 21:33:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 22:46:01]  *** The last 200 lines of the pilot log: ***
[2025-10-12 22:46:01]  lfn=log.46676269._077193.job.log.tgz.1
[2025-10-12 22:46:01]  mtime=0
[2025-10-12 22:46:01]  protocol_id=None
[2025-10-12 22:46:01]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 22:46:01]  replicas=None
[2025-10-12 22:46:01]  scope=mc23_13p6TeV
[2025-10-12 22:46:01]  status=None
[2025-10-12 22:46:01]  status_code=0
[2025-10-12 22:46:01]  storage_token=
[2025-10-12 22:46:01]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6839870956/log.46676269._077193.job.log.tgz.1
[2025-10-12 22:46:01]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/cf/log.46676269._077193.job.log.tgz.1
[2025-10-12 22:46:01]  workdir=None
[2025-10-12 22:46:01] ]
[2025-10-12 22:46:01] 2025-10-12 20:45:17,268 | INFO     | transferring file log.46676269._077193.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6839870956/log.46676269._077193.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 22:46:01] 2025-10-12 20:45:17,268 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6839870956/log.46676269._077193.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._077193.job
[2025-10-12 22:46:01] 2025-10-12 20:45:17,284 | INFO     | adding to output.list: log.46676269._077193.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/cf/log.46676269._077193.job.log.tg
[2025-10-12 22:46:01] 2025-10-12 20:45:17,285 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 22:46:01] 2025-10-12 20:45:17,285 | INFO     | summary of transferred files:
[2025-10-12 22:46:01] 2025-10-12 20:45:17,285 | INFO     |  -- lfn=log.46676269._077193.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 22:46:01] 2025-10-12 20:45:17,285 | INFO     | stage-out finished correctly
[2025-10-12 22:46:01] 2025-10-12 20:45:18,217 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 22:46:01] 2025-10-12 20:45:18,280 | INFO     | job 6839870956 has state=finished
[2025-10-12 22:46:01] 2025-10-12 20:45:18,281 | INFO     | preparing for final server update for job 6839870956 in state='finished'
[2025-10-12 22:46:01] 2025-10-12 20:45:18,281 | INFO     | this job has now completed (state=finished)
[2025-10-12 22:46:01] 2025-10-12 20:45:18,281 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 22:46:01] 2025-10-12 20:45:18,281 | INFO     | log transfer has been attempted: DONE
[2025-10-12 22:46:01] 2025-10-12 20:45:18,281 | INFO     | job 6839870956 has finished - writing final server update
[2025-10-12 22:46:01] 2025-10-12 20:45:18,281 | INFO     | total number of processed events: 400 (read)
[2025-10-12 22:46:01] 2025-10-12 20:45:18,283 | INFO     | executing command: lscpu
[2025-10-12 22:46:01] 2025-10-12 20:45:18,301 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 22:46:01] 2025-10-12 20:45:19,150 | INFO     | time since job start (4290s) is within the limit (172800.0s)
[2025-10-12 22:46:01] 2025-10-12 20:45:21,157 | INFO     | time since job start (4292s) is within the limit (172800.0s)
[2025-10-12 22:46:01] 2025-10-12 20:45:21,241 | WARNING  | process 728577 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 22:46:01] 2025-10-12 20:45:21,241 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839870956/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:46:01] 2025-10-12 20:45:21,317 | INFO     | number of running child processes to parent process 728577: 1
[2025-10-12 22:46:01] 2025-10-12 20:45:21,317 | INFO     | maximum number of monitored processes: 6
[2025-10-12 22:46:01] 2025-10-12 20:45:22,858 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 22:46:01] 2025-10-12 20:45:22,860 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 2190.86275
[2025-10-12 22:46:01] 2025-10-12 20:45:22,861 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839870956/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 22:46:01] 2025-10-12 20:45:22,862 | INFO     | extracted standard info from prmon json
[2025-10-12 22:46:01] 2025-10-12 20:45:22,862 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 22:46:01] 2025-10-12 20:45:22,862 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 22:46:01] 2025-10-12 20:45:22,862 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 22:46:01] 2025-10-12 20:45:22,862 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 22:46:01] 2025-10-12 20:45:22,864 | INFO     | fitting pss+swap vs Time
[2025-10-12 22:46:01] 2025-10-12 20:45:22,864 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 22:46:01] 2025-10-12 20:45:22,864 | INFO     | sum of deviations: -10581506886.0
[2025-10-12 22:46:01] 2025-10-12 20:45:22,864 | INFO     | mean x: 1760299850.0
[2025-10-12 22:46:01] 2025-10-12 20:45:22,864 | INFO     | mean y: 2952364.1428571427
[2025-10-12 22:46:01] 2025-10-12 20:45:22,864 | INFO     | -- intersect: 240297288267.37268
[2025-10-12 22:46:01] 2025-10-12 20:45:22,865 | INFO     | intersect: 240297288267.37268
[2025-10-12 22:46:01] 2025-10-12 20:45:22,865 | INFO     | chi2: 0.13702024440450342
[2025-10-12 22:46:01] 2025-10-12 20:45:22,865 | INFO     | -- intersect: 240297288267.37268
[2025-10-12 22:46:01] 2025-10-12 20:45:22,865 | INFO     | current memory leak: -136.51 B/s (using 63 data points, chi2=0.14)
[2025-10-12 22:46:01] 2025-10-12 20:45:22,865 | INFO     | could have reported an average CPU frequency of 2445 MHz (6 samples)
[2025-10-12 22:46:01] 2025-10-12 20:45:22,865 | INFO     | ..............................
[2025-10-12 22:46:01] 2025-10-12 20:45:22,865 | INFO     | . Timing measurements:
[2025-10-12 22:46:01] 2025-10-12 20:45:22,866 | INFO     | . get job = 0 s
[2025-10-12 22:46:01] 2025-10-12 20:45:22,866 | INFO     | . initial setup = 1 s
[2025-10-12 22:46:01] 2025-10-12 20:45:22,866 | INFO     | . payload setup = 6 s
[2025-10-12 22:46:01] 2025-10-12 20:45:22,866 | INFO     | . stage-in = 0 s
[2025-10-12 22:46:01] 2025-10-12 20:45:22,866 | INFO     | . payload execution = 4261 s
[2025-10-12 22:46:01] 2025-10-12 20:45:22,866 | INFO     | . stage-out = 0 s
[2025-10-12 22:46:01] 2025-10-12 20:45:22,866 | INFO     | . log creation = 0 s
[2025-10-12 22:46:01] 2025-10-12 20:45:22,866 | INFO     | ..............................
[2025-10-12 22:46:01] 2025-10-12 20:45:22,935 | INFO     | 
[2025-10-12 22:46:01] 2025-10-12 20:45:22,935 | INFO     | job summary report
[2025-10-12 22:46:01] 2025-10-12 20:45:22,935 | INFO     | --------------------------------------------------
[2025-10-12 22:46:01] 2025-10-12 20:45:22,935 | INFO     | PanDA job id: 6839870956
[2025-10-12 22:46:01] 2025-10-12 20:45:22,935 | INFO     | task id: 46676269
[2025-10-12 22:46:01] 2025-10-12 20:45:22,935 | INFO     | errors: (none)
[2025-10-12 22:46:01] 2025-10-12 20:45:22,935 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | pilot state: finished 
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | transexitcode: 0
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | exeerrorcode: 0
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | exeerrordiag: 
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | exitcode: 0
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | exitmsg: OK
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | cpuconsumptiontime: 45558 s
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | nevents: 400
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | neventsw: 0
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | pid: 728577
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | pgrp: 728577
[2025-10-12 22:46:01] 2025-10-12 20:45:22,936 | INFO     | corecount: 12
[2025-10-12 22:46:01] 2025-10-12 20:45:22,937 | INFO     | event service: False
[2025-10-12 22:46:01] 2025-10-12 20:45:22,937 | INFO     | sizes: {0: 2348630, 1: 2348885, 4: 2349147, 11: 2349175, 4271: 2375301, 4273: 2384299, 4274: 2384483, 4279: 2384677}
[2025-10-12 22:46:01] 2025-10-12 20:45:22,937 | INFO     | --------------------------------------------------
[2025-10-12 22:46:01] 2025-10-12 20:45:22,937 | INFO     | 
[2025-10-12 22:46:01] 2025-10-12 20:45:22,937 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-12 22:46:01] 2025-10-12 20:45:22,954 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,956 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,956 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,956 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,956 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,956 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,956 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 22:46:01] 2025-10-12 20:45:22,956 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,956 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 22:46:01] 2025-10-12 20:45:22,956 | INFO     | job 6839870956 has completed (purged errors)
[2025-10-12 22:46:01] 2025-10-12 20:45:22,957 | INFO     | overall cleanup function is called
[2025-10-12 22:46:01] 2025-10-12 20:45:23,964 | INFO     | --- collectZombieJob: --- 10, [728577]
[2025-10-12 22:46:01] 2025-10-12 20:45:23,964 | INFO     | zombie collector waiting for pid 728577
[2025-10-12 22:46:01] 2025-10-12 20:45:23,964 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 22:46:01] 2025-10-12 20:45:23,964 | INFO     | collected zombie processes
[2025-10-12 22:46:01] 2025-10-12 20:45:23,964 | INFO     | will attempt to kill all subprocesses of pid=728577
[2025-10-12 22:46:01] 2025-10-12 20:45:24,036 | INFO     | process IDs to be killed: [728577] (in reverse order)
[2025-10-12 22:46:01] 2025-10-12 20:45:24,075 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 22:46:01] 2025-10-12 20:45:24,075 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 22:46:01] 2025-10-12 20:45:24,077 | INFO     | did not find any defunct processes belonging to 728577
[2025-10-12 22:46:01] 2025-10-12 20:45:24,079 | INFO     | did not find any defunct processes belonging to 728577
[2025-10-12 22:46:01] 2025-10-12 20:45:24,079 | INFO     | ready for new job
[2025-10-12 22:46:01] 2025-10-12 20:45:24,079 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 22:46:01] 2025-10-12 20:45:24,081 | INFO     | ***************************************
[2025-10-12 22:46:01] 2025-10-12 20:45:24,081 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 22:46:01] 2025-10-12 20:45:24,081 | INFO     | ***************************************
[2025-10-12 22:46:01] 2025-10-12 20:45:24,081 | INFO     | 
[2025-10-12 22:46:01] 2025-10-12 20:45:24,082 | INFO     | architecture information:
[2025-10-12 22:46:01] 2025-10-12 20:45:24,082 | INFO     | executing command: cat /etc/os-release
[2025-10-12 22:46:01] 2025-10-12 20:45:24,093 | INFO     | cat /etc/os-release:
[2025-10-12 22:46:01] NAME="CentOS Linux"
[2025-10-12 22:46:01] VERSION="7 (Core)"
[2025-10-12 22:46:01] ID="centos"
[2025-10-12 22:46:01] ID_LIKE="rhel fedora"
[2025-10-12 22:46:01] VERSION_ID="7"
[2025-10-12 22:46:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 22:46:01] ANSI_COLOR="0;31"
[2025-10-12 22:46:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 22:46:01] HOME_URL="https://www.centos.org/"
[2025-10-12 22:46:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 22:46:01] 
[2025-10-12 22:46:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 22:46:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 22:46:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 22:46:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 22:46:01] 
[2025-10-12 22:46:01] 2025-10-12 20:45:24,093 | INFO     | ***************************************
[2025-10-12 22:46:01] 2025-10-12 20:45:24,596 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 22:46:01] 2025-10-12 20:45:24,610 | INFO     | sufficient remaining disk space (1716996014080 B)
[2025-10-12 22:46:01] 2025-10-12 20:45:24,611 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 22:46:01] 2025-10-12 20:45:24,611 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 22:46:01] 2025-10-12 20:45:24,611 | INFO     | update_server=False
[2025-10-12 22:46:01] 2025-10-12 20:45:24,611 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 22:46:01] 2025-10-12 20:45:24,611 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:46:01] 2025-10-12 20:45:24,612 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 22:46:01] 2025-10-12 20:45:24,678 | INFO     | all payload control threads have been joined
[2025-10-12 22:46:01] 2025-10-12 20:45:24,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 22:46:01] 2025-10-12 20:45:24,825 | INFO     | aborting loop
[2025-10-12 22:46:01] 2025-10-12 20:45:24,995 | INFO     | all data control threads have been joined
[2025-10-12 22:46:01] 2025-10-12 20:45:25,361 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 22:46:01] 2025-10-12 20:45:25,449 | INFO     | all job control threads have been joined
[2025-10-12 22:46:01] 2025-10-12 20:45:25,616 | INFO     | [job] retrieve thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:25,617 | INFO     | [job] queue monitor thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:25,684 | INFO     | [payload] control thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:25,831 | INFO     | [job] job monitor thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:25,895 | INFO     | [payload] validate_post thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:26,001 | INFO     | [data] control thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:26,039 | INFO     | [data] copytool_in thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:26,194 | INFO     | [payload] failed_post thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:26,454 | INFO     | [job] control thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:26,728 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:26,776 | INFO     | [job] validate thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:26,907 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:27,118 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:27,366 | INFO     | [data] copytool_out thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:28,617 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:34,836 | INFO     | job.realtimelogging is not enabled
[2025-10-12 22:46:01] 2025-10-12 20:45:35,841 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 22:46:01] 2025-10-12 20:45:54,331 | INFO     | PID=721285 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 22:46:01] 2025-10-12 20:45:54,332 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 22:46:01] 2025-10-12 20:45:54,332 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 22:46:01] 2025-10-12 20:45:54,332 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 22:46:01] 2025-10-12 20:45:56,015 | INFO     | [monitor] cgroup control has ended
[2025-10-12 22:46:01] 2025-10-12 20:45:56,285 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432761231168)>', '<ExcThread(monitor, started 140431857800960)>']
[2025-10-12 22:46:01] 2025-10-12 20:45:56,342 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 22:46:01] 2025-10-12 20:45:56,342 | INFO     | [monitor] control thread has ended
[2025-10-12 22:46:01] 2025-10-12 20:46:01,311 | INFO     | all workflow threads have been joined
[2025-10-12 22:46:01] 2025-10-12 20:46:01,311 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 22:46:01] 2025-10-12 20:46:01,311 | INFO     | traces error code: 0
[2025-10-12 22:46:01] 2025-10-12 20:46:01,311 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 22:46:01] 2025-10-12 20:46:01,389 [wrapper] ==== pilot stdout END ====
[2025-10-12 22:46:01] 2025-10-12 20:46:01,392 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 22:46:01] 2025-10-12 20:46:01,394 [wrapper] pilotpid: 721285
[2025-10-12 22:46:01] 2025-10-12 20:46:01,397 [wrapper] Pilot exit status: 0
[2025-10-12 22:46:01] 2025-10-12 20:46:01,405 [wrapper] pandaids: 6839870956
[2025-10-12 22:46:01] 2025-10-12 20:46:01,424 [wrapper] cleanup supervisor_pilot  741228 721286
[2025-10-12 22:46:01] 2025-10-12 20:46:01,426 [wrapper] Test setup, not cleaning
[2025-10-12 22:46:01] 2025-10-12 20:46:01,428 [wrapper] apfmon messages muted
[2025-10-12 22:46:01] 2025-10-12 20:46:01,430 [wrapper] ==== wrapper stdout END ====
[2025-10-12 22:46:01] 2025-10-12 20:46:01,432 [wrapper] ==== wrapper stderr END ====
[2025-10-12 22:46:01]  *** Error codes and diagnostics ***
[2025-10-12 22:46:01]     "exeErrorCode": 0,
[2025-10-12 22:46:01]     "exeErrorDiag": "",
[2025-10-12 22:46:01]     "pilotErrorCode": 0,
[2025-10-12 22:46:01]     "pilotErrorDiag": "",
[2025-10-12 22:46:01]  *** Listing of results directory ***
[2025-10-12 22:46:01] total 411340
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc    557409 Oct 12 13:23 pilot3.tar.gz
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc      5112 Oct 12 13:36 queuedata.json
[2025-10-12 22:46:01] -rwx------ 1 boinc boinc     36292 Oct 12 13:36 runpilot2-wrapper.sh
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc       100 Oct 12 21:33 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 22:46:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 21:33 run_atlas
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc       105 Oct 12 21:33 job.xml
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc      6251 Oct 12 21:33 init_data.xml
[2025-10-12 22:46:01] -rw-r--r-- 2 boinc boinc 220183312 Oct 12 21:33 EVNT.46676267._003700.pool.root.1
[2025-10-12 22:46:01] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:33 start_atlas.sh
[2025-10-12 22:46:01] drwxrwx--x 2 boinc boinc      4096 Oct 12 21:33 shared
[2025-10-12 22:46:01] -rw-r--r-- 2 boinc boinc    569680 Oct 12 21:33 input.tar.gz
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc         0 Oct 12 21:33 boinc_lockfile
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc      2550 Oct 12 21:33 pandaJob.out
[2025-10-12 22:46:01] -rw------- 1 boinc boinc    975536 Oct 12 21:33 agis_schedconf.cvmfs.json
[2025-10-12 22:46:01] -rw------- 1 boinc boinc   1560580 Oct 12 21:33 agis_ddmendpoints.agis.ALL.json
[2025-10-12 22:46:01] drwx------ 5 boinc boinc      4096 Oct 12 21:33 pilot3
[2025-10-12 22:46:01] -rw------- 1 boinc boinc 195118199 Oct 12 22:44 HITS.46676269._077193.pool.root.1
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc       529 Oct 12 22:44 boinc_task_state.xml
[2025-10-12 22:46:01] -rw------- 1 boinc boinc      1014 Oct 12 22:45 memory_monitor_summary.json
[2025-10-12 22:46:01] -rw------- 1 boinc boinc    370971 Oct 12 22:45 log.46676269._077193.job.log.tgz.1
[2025-10-12 22:46:01] -rw------- 1 boinc boinc        95 Oct 12 22:45 pilot_heartbeat.json
[2025-10-12 22:46:01] -rw------- 1 boinc boinc      7794 Oct 12 22:45 heartbeat.json
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc        27 Oct 12 22:45 wrapper_checkpoint.txt
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc      8192 Oct 12 22:46 boinc_mmap_file
[2025-10-12 22:46:01] -rw------- 1 boinc boinc      4821 Oct 12 22:46 pilotlog.txt
[2025-10-12 22:46:01] -rw------- 1 boinc boinc    631892 Oct 12 22:46 log.46676269._077193.job.log.1
[2025-10-12 22:46:01] -rw------- 1 boinc boinc       357 Oct 12 22:46 output.list
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc       620 Oct 12 22:46 runtime_log
[2025-10-12 22:46:01] -rw------- 1 boinc boinc   1024000 Oct 12 22:46 result.tar.gz
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc      8727 Oct 12 22:46 runtime_log.err
[2025-10-12 22:46:01] -rw------- 1 boinc boinc       656 Oct 12 22:46 7mvLDm9X9R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4djNDmprqdBn.diag
[2025-10-12 22:46:01] -rw-r--r-- 1 boinc boinc     21721 Oct 12 22:46 stderr.txt
[2025-10-12 22:46:01] HITS file was successfully produced:
[2025-10-12 22:46:01] -rw------- 1 boinc boinc 195118199 Oct 12 22:44 shared/HITS.pool.root.1
[2025-10-12 22:46:01]  *** Contents of shared directory: ***
[2025-10-12 22:46:01] total 407152
[2025-10-12 22:46:01] -rw-r--r-- 2 boinc boinc 220183312 Oct 12 21:33 ATLAS.root_0
[2025-10-12 22:46:01] -rw-r--r-- 2 boinc boinc     15120 Oct 12 21:33 start_atlas.sh
[2025-10-12 22:46:01] -rw-r--r-- 2 boinc boinc    569680 Oct 12 21:33 input.tar.gz
[2025-10-12 22:46:01] -rw------- 1 boinc boinc 195118199 Oct 12 22:44 HITS.pool.root.1
[2025-10-12 22:46:01] -rw------- 1 boinc boinc   1024000 Oct 12 22:46 result.tar.gz
22:46:02 (717543): run_atlas exited; CPU time 45569.813837
22:46:02 (717543): called boinc_finish(0)

</stderr_txt>
]]>

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