Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
18:50:07 (5211): wrapper (7.7.26015): starting
18:50:07 (5211): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:50:07] Arguments: --nthreads 8
[2025-10-12 18:50:07] Threads: 8
[2025-10-12 18:50:07] Checking for CVMFS
[2025-10-12 18:50:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:50:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:50:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:50:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:50:07] 2.11.0.0 4176 947 57516 151627 1 1 1851647 4096001 0 130560 0 426837 98.458 699281 1013 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 18:50:07] CVMFS is ok
[2025-10-12 18:50:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:50:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:50:07] Further information can be found at the LHC@home message board.
[2025-10-12 18:50:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:50:07] Checking for apptainer binary...
[2025-10-12 18:50:07] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 18:50:07] apptainer is not installed, using version from CVMFS
[2025-10-12 18:50:07] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:50:08] WARNING: Environment variable TMPDIR already has value [/tmp/job_10518141/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node210
[2025-10-12 18:50:08] apptainer works
[2025-10-12 18:50:08] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:50:08] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:50:08] Starting ATLAS job with PandaID=6839475062
[2025-10-12 18:50:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10518141/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:39:31]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:39:31]  storage_token=
[2025-10-12 19:39:31]  surl=/tmp/job_10518141/atlas/pilot/slots/0/PanDA_Pilot-6839475062/log.46676269._071796.job.log.tgz.1
[2025-10-12 19:39:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/b8/log.46676269._071796.job.log.tgz.1
[2025-10-12 19:39:31]  workdir=None
[2025-10-12 19:39:31] ]
[2025-10-12 19:39:31] 2025-10-12 17:38:51,391 | INFO     | transferring file log.46676269._071796.job.log.tgz.1 from /tmp/job_10518141/atlas/pilot/slots/0/PanDA_Pilot-6839475062/log.46676269._071796.job.log.tgz.1 to /tmp/j
[2025-10-12 19:39:31] 2025-10-12 17:38:51,392 | INFO     | executing command: /usr/bin/env mv /tmp/job_10518141/atlas/pilot/slots/0/PanDA_Pilot-6839475062/log.46676269._071796.job.log.tgz.1 /tmp/job_10518141/atlas/pilot/sl
[2025-10-12 19:39:31] 2025-10-12 17:38:51,399 | INFO     | adding to output.list: log.46676269._071796.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/b8/log.46676269._071796.job.log.tg
[2025-10-12 19:39:31] 2025-10-12 17:38:51,400 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 19:39:31] 2025-10-12 17:38:51,400 | INFO     | summary of transferred files:
[2025-10-12 19:39:31] 2025-10-12 17:38:51,400 | INFO     |  -- lfn=log.46676269._071796.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 19:39:31] 2025-10-12 17:38:51,400 | INFO     | stage-out finished correctly
[2025-10-12 19:39:31] 2025-10-12 17:38:52,234 | INFO     | time since job start (2916s) is within the limit (172800.0s)
[2025-10-12 19:39:31] 2025-10-12 17:38:53,751 | INFO     | monitor loop #220: job 0:6839475062 is in state 'finished'
[2025-10-12 19:39:31] 2025-10-12 17:38:53,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:31] 2025-10-12 17:38:54,239 | INFO     | time since job start (2918s) is within the limit (172800.0s)
[2025-10-12 19:39:31] 2025-10-12 17:38:54,239 | INFO     | 2919s have passed since pilot start - server update state is 'RUNNING'
[2025-10-12 19:39:31] 2025-10-12 17:38:54,782 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 19:39:31] 2025-10-12 17:38:55,358 | INFO     | PID=10066 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:39:31] 2025-10-12 17:38:56,254 | INFO     | monitor loop #221: job 0:6839475062 is in state 'finished'
[2025-10-12 19:39:31] 2025-10-12 17:38:56,254 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:31] 2025-10-12 17:38:56,358 | INFO     | time since job start (2920s) is within the limit (172800.0s)
[2025-10-12 19:39:31] 2025-10-12 17:38:57,547 | INFO     | job 6839475062 has state=finished
[2025-10-12 19:39:31] 2025-10-12 17:38:57,547 | INFO     | preparing for final server update for job 6839475062 in state='finished'
[2025-10-12 19:39:31] 2025-10-12 17:38:57,548 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:39:31] 2025-10-12 17:38:57,548 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:39:31] 2025-10-12 17:38:57,548 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:39:31] 2025-10-12 17:38:57,548 | INFO     | job 6839475062 has finished - writing final server update
[2025-10-12 19:39:31] 2025-10-12 17:38:57,548 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:39:31] 2025-10-12 17:38:57,548 | INFO     | executing command: lscpu
[2025-10-12 19:39:31] 2025-10-12 17:38:57,578 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:39:31] 2025-10-12 17:38:58,363 | INFO     | time since job start (2922s) is within the limit (172800.0s)
[2025-10-12 19:39:31] 2025-10-12 17:38:58,756 | INFO     | monitor loop #222: job 0:6839475062 is in state 'finished'
[2025-10-12 19:39:31] 2025-10-12 17:38:58,757 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:39:31] 2025-10-12 17:38:59,178 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:39:31] 2025-10-12 17:38:59,182 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2364.956265625
[2025-10-12 19:39:31] 2025-10-12 17:38:59,187 | INFO     | using path: /tmp/job_10518141/atlas/pilot/slots/0/PanDA_Pilot-6839475062/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:39:31] 2025-10-12 17:38:59,188 | INFO     | extracted standard info from prmon json
[2025-10-12 19:39:31] 2025-10-12 17:38:59,188 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:39:31] 2025-10-12 17:38:59,188 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:39:31] 2025-10-12 17:38:59,188 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:39:31] 2025-10-12 17:38:59,188 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | sum of square deviations: 21358540.0
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | sum of deviations: -5004216679.000001
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | mean x: 1760289358.0
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | mean y: 2737497.5853658537
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | -- intersect: 412431179009.49603
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | intersect: 412431179009.49603
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | chi2: 0.06924395839147417
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | -- intersect: 412431179009.49603
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | current memory leak: -234.30 B/s (using 41 data points, chi2=0.07)
[2025-10-12 19:39:31] 2025-10-12 17:38:59,189 | INFO     | could have reported an average CPU frequency of 2394 MHz (5 samples)
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | ..............................
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | . Timing measurements:
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | . get job = 0 s
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | . initial setup = 1 s
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | . payload setup = 2 s
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | . stage-in = 0 s
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | . payload execution = 2895 s
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | . stage-out = 0 s
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | . log creation = 0 s
[2025-10-12 19:39:31] 2025-10-12 17:38:59,190 | INFO     | ..............................
[2025-10-12 19:39:31] 2025-10-12 17:38:59,240 | INFO     | 
[2025-10-12 19:39:31] 2025-10-12 17:38:59,240 | INFO     | job summary report
[2025-10-12 19:39:31] 2025-10-12 17:38:59,240 | INFO     | --------------------------------------------------
[2025-10-12 19:39:31] 2025-10-12 17:38:59,240 | INFO     | PanDA job id: 6839475062
[2025-10-12 19:39:31] 2025-10-12 17:38:59,240 | INFO     | task id: 46676269
[2025-10-12 19:39:31] 2025-10-12 17:38:59,240 | INFO     | errors: (none)
[2025-10-12 19:39:31] 2025-10-12 17:38:59,240 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:39:31] 2025-10-12 17:38:59,240 | INFO     | pilot state: finished 
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | transexitcode: 0
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | exeerrorcode: 0
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | exeerrordiag: 
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | exitcode: 0
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | exitmsg: OK
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | cpuconsumptiontime: 21163 s
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | nevents: 400
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | neventsw: 0
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | pid: 18196
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | pgrp: 18196
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | corecount: 8
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | event service: False
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | sizes: {0: 2348983, 2: 2349245, 11: 2349273, 2901: 2374766, 2902: 2383794, 2906: 2383850, 2910: 2384204}
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | --------------------------------------------------
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | 
[2025-10-12 19:39:31] 2025-10-12 17:38:59,241 | INFO     | executing command: ls -lF /tmp/job_10518141/atlas/pilot/slots/0
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,250 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,251 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,251 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:39:31] 2025-10-12 17:38:59,251 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,251 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:39:31] 2025-10-12 17:38:59,251 | INFO     | job 6839475062 has completed (purged errors)
[2025-10-12 19:39:31] 2025-10-12 17:38:59,251 | INFO     | overall cleanup function is called
[2025-10-12 19:39:31] 2025-10-12 17:39:00,257 | INFO     | --- collectZombieJob: --- 10, [18196]
[2025-10-12 19:39:31] 2025-10-12 17:39:00,257 | INFO     | zombie collector waiting for pid 18196
[2025-10-12 19:39:31] 2025-10-12 17:39:00,257 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:39:31] 2025-10-12 17:39:00,257 | INFO     | collected zombie processes
[2025-10-12 19:39:31] 2025-10-12 17:39:00,257 | INFO     | will attempt to kill all subprocesses of pid=18196
[2025-10-12 19:39:31] 2025-10-12 17:39:00,341 | INFO     | process IDs to be killed: [18196] (in reverse order)
[2025-10-12 19:39:31] 2025-10-12 17:39:00,368 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:39:31] 2025-10-12 17:39:00,368 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:39:31] 2025-10-12 17:39:00,372 | INFO     | did not find any defunct processes belonging to 18196
[2025-10-12 19:39:31] 2025-10-12 17:39:00,374 | INFO     | did not find any defunct processes belonging to 18196
[2025-10-12 19:39:31] 2025-10-12 17:39:00,374 | INFO     | ready for new job
[2025-10-12 19:39:31] 2025-10-12 17:39:00,374 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:39:31] 2025-10-12 17:39:00,375 | INFO     | ***************************************
[2025-10-12 19:39:31] 2025-10-12 17:39:00,375 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:39:31] 2025-10-12 17:39:00,375 | INFO     | ***************************************
[2025-10-12 19:39:31] 2025-10-12 17:39:00,375 | INFO     | 
[2025-10-12 19:39:31] 2025-10-12 17:39:00,389 | INFO     | architecture information:
[2025-10-12 19:39:31] 2025-10-12 17:39:00,389 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:39:31] 2025-10-12 17:39:00,395 | INFO     | cat /etc/os-release:
[2025-10-12 19:39:31] NAME="CentOS Linux"
[2025-10-12 19:39:31] VERSION="7 (Core)"
[2025-10-12 19:39:31] ID="centos"
[2025-10-12 19:39:31] ID_LIKE="rhel fedora"
[2025-10-12 19:39:31] VERSION_ID="7"
[2025-10-12 19:39:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:39:31] ANSI_COLOR="0;31"
[2025-10-12 19:39:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:39:31] HOME_URL="https://www.centos.org/"
[2025-10-12 19:39:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:39:31] 
[2025-10-12 19:39:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:39:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:39:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:39:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:39:31] 
[2025-10-12 19:39:31] 2025-10-12 17:39:00,395 | INFO     | ***************************************
[2025-10-12 19:39:31] 2025-10-12 17:39:00,897 | INFO     | executing command: df -mP /tmp/job_10518141/atlas/pilot/slots/0
[2025-10-12 19:39:31] 2025-10-12 17:39:00,903 | INFO     | sufficient remaining disk space (229464080384 B)
[2025-10-12 19:39:31] 2025-10-12 17:39:00,903 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:39:31] 2025-10-12 17:39:00,903 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:39:31] 2025-10-12 17:39:00,903 | INFO     | update_server=False
[2025-10-12 19:39:31] 2025-10-12 17:39:00,903 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:39:31] 2025-10-12 17:39:00,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:39:31] 2025-10-12 17:39:00,904 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:39:31] 2025-10-12 17:39:00,931 | INFO     | all data control threads have been joined
[2025-10-12 19:39:31] 2025-10-12 17:39:01,259 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 19:39:31] 2025-10-12 17:39:01,259 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 19:39:31] 2025-10-12 17:39:01,259 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:39:31] 2025-10-12 17:39:01,259 | INFO     | will abort loop
[2025-10-12 19:39:31] 2025-10-12 17:39:01,789 | INFO     | all job control threads have been joined
[2025-10-12 19:39:31] 2025-10-12 17:39:01,909 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:01,909 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:01,937 | INFO     | [data] control thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:01,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:39:31] 2025-10-12 17:39:02,059 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:02,095 | INFO     | all payload control threads have been joined
[2025-10-12 19:39:31] 2025-10-12 17:39:02,265 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:02,526 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:02,794 | INFO     | [job] control thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:03,100 | INFO     | [payload] control thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:03,116 | INFO     | [job] validate thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:03,235 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:03,275 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:03,296 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:03,410 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:03,969 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:04,909 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:11,913 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:39:31] 2025-10-12 17:39:12,918 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:39:31] 2025-10-12 17:39:20,478 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:39:31] 2025-10-12 17:39:22,289 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064669440)>']
[2025-10-12 19:39:31] 2025-10-12 17:39:27,314 | INFO     | all workflow threads have been joined
[2025-10-12 19:39:31] 2025-10-12 17:39:27,314 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:39:31] 2025-10-12 17:39:27,314 | INFO     | traces error code: 0
[2025-10-12 19:39:31] 2025-10-12 17:39:27,314 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:39:31] 2025-10-12 17:39:31,535 | INFO     | PID=10066 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:39:31] 2025-10-12 17:39:31,535 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:39:31] 2025-10-12 17:39:31,535 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:39:31] 2025-10-12 17:39:31,535 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:39:31] 2025-10-12 17:39:31,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:39:31] 2025-10-12 17:39:31,535 | INFO     | [monitor] control thread has ended
[2025-10-12 19:39:31] 2025-10-12 17:39:31,589 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:39:31] 2025-10-12 17:39:31,591 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:39:31] 2025-10-12 17:39:31,592 [wrapper] pilotpid: 10066
[2025-10-12 19:39:31] 2025-10-12 17:39:31,593 [wrapper] Pilot exit status: 0
[2025-10-12 19:39:31] 2025-10-12 17:39:31,597 [wrapper] pandaids: 6839475062
[2025-10-12 19:39:31] 2025-10-12 17:39:31,616 [wrapper] cleanup supervisor_pilot  6997 10067
[2025-10-12 19:39:31] 2025-10-12 17:39:31,617 [wrapper] Test setup, not cleaning
[2025-10-12 19:39:31] 2025-10-12 17:39:31,618 [wrapper] apfmon messages muted
[2025-10-12 19:39:31] 2025-10-12 17:39:31,619 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:39:31] 2025-10-12 17:39:31,620 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:39:31]  *** Error codes and diagnostics ***
[2025-10-12 19:39:31]     "exeErrorCode": 0,
[2025-10-12 19:39:31]     "exeErrorDiag": "",
[2025-10-12 19:39:31]     "pilotErrorCode": 0,
[2025-10-12 19:39:31]     "pilotErrorDiag": "",
[2025-10-12 19:39:31]  *** Listing of results directory ***
[2025-10-12 19:39:31] total 416896
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user    557409 Oct 12 06:38 pilot3.tar.gz
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user      5112 Oct 12 07:17 queuedata.json
[2025-10-12 19:39:31] -rwx------ 1 mf493845 unix-user     36292 Oct 12 07:18 runpilot2-wrapper.sh
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user       100 Oct 12 17:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:39:31] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 17:53 run_atlas
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user       105 Oct 12 17:53 job.xml
[2025-10-12 19:39:31] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 18:50 start_atlas.sh
[2025-10-12 19:39:31] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 18:50 shared
[2025-10-12 19:39:31] -rw-r--r-- 2 mf493845 unix-user    569683 Oct 12 18:50 input.tar.gz
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user      6394 Oct 12 18:50 init_data.xml
[2025-10-12 19:39:31] -rw-r--r-- 2 mf493845 unix-user 220534939 Oct 12 18:50 EVNT.46676267._004316.pool.root.1
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user         0 Oct 12 18:50 boinc_setup_complete
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user      8192 Oct 12 18:50 boinc_mmap_file
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user         0 Oct 12 18:50 boinc_lockfile
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user      2550 Oct 12 18:50 pandaJob.out
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user    975528 Oct 12 18:50 agis_schedconf.cvmfs.json
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user   1560580 Oct 12 18:50 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:39:31] drwx------ 5 mf493845 unix-user       440 Oct 12 18:50 pilot3
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user 200952754 Oct 12 19:38 HITS.46676269._071796.pool.root.1
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user      1011 Oct 12 19:38 memory_monitor_summary.json
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user    313166 Oct 12 19:38 log.46676269._071796.job.log.tgz.1
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user        95 Oct 12 19:38 pilot_heartbeat.json
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user      7779 Oct 12 19:38 heartbeat.json
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user       745 Oct 12 19:39 pilotlog.txt
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user    455311 Oct 12 19:39 log.46676269._071796.job.log.1
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user       357 Oct 12 19:39 output.list
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user       620 Oct 12 19:39 runtime_log
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user    788480 Oct 12 19:39 result.tar.gz
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user      9076 Oct 12 19:39 runtime_log.err
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user       644 Oct 12 19:39 qDLODmze3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmhiNDmxFhJvn.diag
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user     22742 Oct 12 19:39 stderr.txt
[2025-10-12 19:39:31] HITS file was successfully produced:
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user 200952754 Oct 12 19:38 shared/HITS.pool.root.1
[2025-10-12 19:39:31]  *** Contents of shared directory: ***
[2025-10-12 19:39:31] total 412960
[2025-10-12 19:39:31] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 18:50 start_atlas.sh
[2025-10-12 19:39:31] -rw-r--r-- 2 mf493845 unix-user    569683 Oct 12 18:50 input.tar.gz
[2025-10-12 19:39:31] -rw-r--r-- 2 mf493845 unix-user 220534939 Oct 12 18:50 ATLAS.root_0
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user 200952754 Oct 12 19:38 HITS.pool.root.1
[2025-10-12 19:39:31] -rw------- 1 mf493845 unix-user    788480 Oct 12 19:39 result.tar.gz
19:39:33 (5211): run_atlas exited; CPU time 21198.491221
19:39:33 (5211): called boinc_finish(0)

</stderr_txt>
]]>

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