Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:45:52 (28867): wrapper (7.7.26015): starting
10:45:52 (28867): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:45:52] Arguments: --nthreads 8
[2025-10-12 10:45:52] Threads: 8
[2025-10-12 10:45:52] Checking for CVMFS
[2025-10-12 10:45:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:45:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:45:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:45:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:45:52] 2.11.2.0 5808 105709 98128 151623 3 188 13789148 18432000 2749 130560 0 65872152 99.978 4070566 4201 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-10-12 10:45:52] CVMFS is ok
[2025-10-12 10:45:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:45:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:45:52] Further information can be found at the LHC@home message board.
[2025-10-12 10:45:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:45:52] Checking for apptainer binary...
[2025-10-12 10:45:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:45:52] Running /usr/bin/apptainer --version
[2025-10-12 10:45:52] apptainer version 1.3.2-1.el7
[2025-10-12 10:45:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:45:53] c-9-34.aglt2.org
[2025-10-12 10:45:53] apptainer works
[2025-10-12 10:45:53] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:45:53] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:45:53] Starting ATLAS job with PandaID=6840081055
[2025-10-12 10:45:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:28:26]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:28:26] 2025-10-12 17:27:31,441 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:28:26] 2025-10-12 17:27:31,442 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:28:26] 2025-10-12 17:27:31,442 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:28:26] 2025-10-12 17:27:31,444 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:28:26] 2025-10-12 17:27:31,444 | INFO     | sum of square deviations: 1246386160.0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,445 | INFO     | sum of deviations: 9163711214.000006
[2025-10-12 13:28:26] 2025-10-12 17:27:31,445 | INFO     | mean x: 1760285209.0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,445 | INFO     | mean y: 2456089.5786163523
[2025-10-12 13:28:26] 2025-10-12 17:27:31,445 | INFO     | -- intersect: -12939556448.134129
[2025-10-12 13:28:26] 2025-10-12 17:27:31,445 | INFO     | intersect: -12939556448.134129
[2025-10-12 13:28:26] 2025-10-12 17:27:31,445 | INFO     | chi2: 2.206429045212053
[2025-10-12 13:28:26] 2025-10-12 17:27:31,446 | INFO     | sum of square deviations: 1132458442.5
[2025-10-12 13:28:26] 2025-10-12 17:27:31,446 | INFO     | sum of deviations: 19153037420.000004
[2025-10-12 13:28:26] 2025-10-12 17:27:31,446 | INFO     | mean x: 1760285056.5
[2025-10-12 13:28:26] 2025-10-12 17:27:31,447 | INFO     | mean y: 2469104.1298701297
[2025-10-12 13:28:26] 2025-10-12 17:27:31,447 | INFO     | -- intersect: -29768871098.503056
[2025-10-12 13:28:26] 2025-10-12 17:27:31,447 | INFO     | intersect: -29768871098.503056
[2025-10-12 13:28:26] 2025-10-12 17:27:31,447 | INFO     | chi2: 1.433947836112152
[2025-10-12 13:28:26] 2025-10-12 17:27:31,447 | INFO     | current chi2=1.433947836112152 (change=35.01047136667204 %)
[2025-10-12 13:28:26] 2025-10-12 17:27:31,447 | INFO     | sum of square deviations: 1025693650.0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,448 | INFO     | sum of deviations: 18486453393.000004
[2025-10-12 13:28:26] 2025-10-12 17:27:31,448 | INFO     | mean x: 1760284904.0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,448 | INFO     | mean y: 2468151.66442953
[2025-10-12 13:28:26] 2025-10-12 17:27:31,448 | INFO     | -- intersect: -31723793228.814514
[2025-10-12 13:28:26] 2025-10-12 17:27:31,448 | INFO     | intersect: -31723793228.814514
[2025-10-12 13:28:26] 2025-10-12 17:27:31,448 | INFO     | chi2: 1.4354298266371026
[2025-10-12 13:28:26] 2025-10-12 17:27:31,449 | INFO     | current chi2=1.4354298266371026 (change=-0.1033503791162081 %)
[2025-10-12 13:28:26] 2025-10-12 17:27:31,449 | INFO     | right removable region: 148
[2025-10-12 13:28:26] 2025-10-12 17:27:31,449 | INFO     | sum of square deviations: 1132458442.5
[2025-10-12 13:28:26] 2025-10-12 17:27:31,449 | INFO     | sum of deviations: -14328744480.5
[2025-10-12 13:28:26] 2025-10-12 17:27:31,450 | INFO     | mean x: 1760285361.5
[2025-10-12 13:28:26] 2025-10-12 17:27:31,450 | INFO     | mean y: 2487104.8896103897
[2025-10-12 13:28:26] 2025-10-12 17:27:31,450 | INFO     | -- intersect: 22274985777.791748
[2025-10-12 13:28:26] 2025-10-12 17:27:31,450 | INFO     | intersect: 22274985777.791748
[2025-10-12 13:28:26] 2025-10-12 17:27:31,450 | INFO     | chi2: 0.8344604158336493
[2025-10-12 13:28:26] 2025-10-12 17:27:31,450 | INFO     | current chi2=0.8344604158336493 (change=62.1805007668646 %)
[2025-10-12 13:28:26] 2025-10-12 17:27:31,450 | INFO     | sum of square deviations: 1025693650.0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,451 | INFO     | sum of deviations: -14419503788.0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,451 | INFO     | mean x: 1760285514.0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,451 | INFO     | mean y: 2487177.463087248
[2025-10-12 13:28:26] 2025-10-12 17:27:31,451 | INFO     | -- intersect: 24749100005.849545
[2025-10-12 13:28:26] 2025-10-12 17:27:31,451 | INFO     | intersect: 24749100005.849545
[2025-10-12 13:28:26] 2025-10-12 17:27:31,451 | INFO     | chi2: 0.8235238132551701
[2025-10-12 13:28:26] 2025-10-12 17:27:31,452 | INFO     | current chi2=0.8235238132551701 (change=1.3106196975866373 %)
[2025-10-12 13:28:26] 2025-10-12 17:27:31,452 | INFO     | left removable region: 20
[2025-10-12 13:28:26] 2025-10-12 17:27:31,452 | INFO     | sum of square deviations: 650252192.0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,452 | INFO     | sum of deviations: -595511371.5
[2025-10-12 13:28:26] 2025-10-12 17:27:31,452 | INFO     | mean x: 1760285483.5
[2025-10-12 13:28:26] 2025-10-12 17:27:31,452 | INFO     | mean y: 2495643.4921875
[2025-10-12 13:28:26] 2025-10-12 17:27:31,453 | INFO     | -- intersect: 1614593281.004843
[2025-10-12 13:28:26] 2025-10-12 17:27:31,453 | INFO     | intersect: 1614593281.004843
[2025-10-12 13:28:26] 2025-10-12 17:27:31,453 | INFO     | chi2: 0.015354796192830708
[2025-10-12 13:28:26] 2025-10-12 17:27:31,453 | INFO     | -- intersect: 1614593281.004843
[2025-10-12 13:28:26] 2025-10-12 17:27:31,453 | INFO     | current memory leak: -0.92 B/s (using 128 data points, chi2=0.02)
[2025-10-12 13:28:26] 2025-10-12 17:27:31,453 | INFO     | could have reported an average CPU frequency of 2999 MHz (9 samples)
[2025-10-12 13:28:26] 2025-10-12 17:27:31,453 | INFO     | ..............................
[2025-10-12 13:28:26] 2025-10-12 17:27:31,453 | INFO     | . Timing measurements:
[2025-10-12 13:28:26] 2025-10-12 17:27:31,454 | INFO     | . get job = 0 s
[2025-10-12 13:28:26] 2025-10-12 17:27:31,454 | INFO     | . initial setup = 2 s
[2025-10-12 13:28:26] 2025-10-12 17:27:31,454 | INFO     | . payload setup = 4 s
[2025-10-12 13:28:26] 2025-10-12 17:27:31,454 | INFO     | . stage-in = 0 s
[2025-10-12 13:28:26] 2025-10-12 17:27:31,454 | INFO     | . payload execution = 9658 s
[2025-10-12 13:28:26] 2025-10-12 17:27:31,454 | INFO     | . stage-out = 0 s
[2025-10-12 13:28:26] 2025-10-12 17:27:31,454 | INFO     | . log creation = 0 s
[2025-10-12 13:28:26] 2025-10-12 17:27:31,454 | INFO     | ..............................
[2025-10-12 13:28:26] 2025-10-12 17:27:31,553 | INFO     | 
[2025-10-12 13:28:26] 2025-10-12 17:27:31,553 | INFO     | job summary report
[2025-10-12 13:28:26] 2025-10-12 17:27:31,553 | INFO     | --------------------------------------------------
[2025-10-12 13:28:26] 2025-10-12 17:27:31,553 | INFO     | PanDA job id: 6840081055
[2025-10-12 13:28:26] 2025-10-12 17:27:31,553 | INFO     | task id: 46676269
[2025-10-12 13:28:26] 2025-10-12 17:27:31,553 | INFO     | errors: (none)
[2025-10-12 13:28:26] 2025-10-12 17:27:31,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | pilot state: finished 
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | transexitcode: 0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | exeerrorcode: 0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | exeerrordiag: 
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | exitcode: 0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | exitmsg: OK
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | cpuconsumptiontime: 72830 s
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | nevents: 400
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | neventsw: 0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | pid: 40150
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | pgrp: 40150
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | corecount: 8
[2025-10-12 13:28:26] 2025-10-12 17:27:31,554 | INFO     | event service: False
[2025-10-12 13:28:26] 2025-10-12 17:27:31,555 | INFO     | sizes: {0: 2348806, 1: 2348806, 4: 2349096, 11: 2349124, 9667: 2377688, 9668: 2386870, 9671: 2387072}
[2025-10-12 13:28:26] 2025-10-12 17:27:31,555 | INFO     | --------------------------------------------------
[2025-10-12 13:28:26] 2025-10-12 17:27:31,555 | INFO     | 
[2025-10-12 13:28:26] 2025-10-12 17:27:31,555 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 13:28:26] 2025-10-12 17:27:31,574 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,574 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,574 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,574 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,575 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,575 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,577 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,577 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:28:26] 2025-10-12 17:27:31,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,577 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:28:26] 2025-10-12 17:27:31,577 | INFO     | job 6840081055 has completed (purged errors)
[2025-10-12 13:28:26] 2025-10-12 17:27:31,578 | INFO     | overall cleanup function is called
[2025-10-12 13:28:26] 2025-10-12 17:27:32,585 | INFO     | --- collectZombieJob: --- 10, [40150]
[2025-10-12 13:28:26] 2025-10-12 17:27:32,585 | INFO     | zombie collector waiting for pid 40150
[2025-10-12 13:28:26] 2025-10-12 17:27:32,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:28:26] 2025-10-12 17:27:32,586 | INFO     | collected zombie processes
[2025-10-12 13:28:26] 2025-10-12 17:27:32,586 | INFO     | will attempt to kill all subprocesses of pid=40150
[2025-10-12 13:28:26] 2025-10-12 17:27:32,860 | INFO     | process IDs to be killed: [40150] (in reverse order)
[2025-10-12 13:28:26] 2025-10-12 17:27:32,937 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:28:26] 2025-10-12 17:27:32,937 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:28:26] 2025-10-12 17:27:32,943 | INFO     | did not find any defunct processes belonging to 40150
[2025-10-12 13:28:26] 2025-10-12 17:27:32,948 | INFO     | did not find any defunct processes belonging to 40150
[2025-10-12 13:28:26] 2025-10-12 17:27:32,948 | INFO     | ready for new job
[2025-10-12 13:28:26] 2025-10-12 17:27:32,948 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:28:26] 2025-10-12 17:27:32,950 | INFO     | ***************************************
[2025-10-12 13:28:26] 2025-10-12 17:27:32,950 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:28:26] 2025-10-12 17:27:32,950 | INFO     | ***************************************
[2025-10-12 13:28:26] 2025-10-12 17:27:32,950 | INFO     | 
[2025-10-12 13:28:26] 2025-10-12 17:27:32,951 | INFO     | architecture information:
[2025-10-12 13:28:26] 2025-10-12 17:27:32,952 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:28:26] 2025-10-12 17:27:32,961 | INFO     | cat /etc/os-release:
[2025-10-12 13:28:26] NAME="CentOS Linux"
[2025-10-12 13:28:26] VERSION="7 (Core)"
[2025-10-12 13:28:26] ID="centos"
[2025-10-12 13:28:26] ID_LIKE="rhel fedora"
[2025-10-12 13:28:26] VERSION_ID="7"
[2025-10-12 13:28:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:28:26] ANSI_COLOR="0;31"
[2025-10-12 13:28:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:28:26] HOME_URL="https://www.centos.org/"
[2025-10-12 13:28:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:28:26] 
[2025-10-12 13:28:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:28:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:28:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:28:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:28:26] 
[2025-10-12 13:28:26] 2025-10-12 17:27:32,961 | INFO     | ***************************************
[2025-10-12 13:28:26] 2025-10-12 17:27:33,465 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 13:28:26] 2025-10-12 17:27:33,484 | INFO     | sufficient remaining disk space (105077800960 B)
[2025-10-12 13:28:26] 2025-10-12 17:27:33,484 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:28:26] 2025-10-12 17:27:33,485 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:28:26] 2025-10-12 17:27:33,485 | INFO     | update_server=False
[2025-10-12 13:28:26] 2025-10-12 17:27:33,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:28:26] 2025-10-12 17:27:33,485 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:28:26] 2025-10-12 17:27:33,485 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:28:26] 2025-10-12 17:27:33,818 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:28:26] 2025-10-12 17:27:34,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:28:26] 2025-10-12 17:27:34,370 | INFO     | aborting loop
[2025-10-12 13:28:26] 2025-10-12 17:27:34,489 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:34,490 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:34,504 | INFO     | all data control threads have been joined
[2025-10-12 13:28:26] 2025-10-12 17:27:34,666 | INFO     | all job control threads have been joined
[2025-10-12 13:28:26] 2025-10-12 17:27:34,740 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:34,760 | INFO     | all payload control threads have been joined
[2025-10-12 13:28:26] 2025-10-12 17:27:34,988 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,182 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,265 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,375 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,490 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,509 | INFO     | [data] control thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,554 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,671 | INFO     | [job] control thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,689 | INFO     | [job] validate thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,765 | INFO     | [payload] control thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,812 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:35,983 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:27:37,823 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:28:26] 2025-10-12 17:28:03,335 | INFO     | PID=33504 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:28:26] 2025-10-12 17:28:03,335 | INFO     | .. there are 4 such processes running
[2025-10-12 13:28:26] 2025-10-12 17:28:03,336 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:28:26] 2025-10-12 17:28:03,336 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:28:26] 2025-10-12 17:28:03,336 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:28:26] 2025-10-12 17:28:19,886 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:28:26] 2025-10-12 17:28:21,605 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139999382943552)>', '<ExcThread(monitor, started 139998787516160)>']
[2025-10-12 13:28:26] 2025-10-12 17:28:22,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:28:26] 2025-10-12 17:28:22,427 | INFO     | [monitor] control thread has ended
[2025-10-12 13:28:26] 2025-10-12 17:28:26,631 | INFO     | all workflow threads have been joined
[2025-10-12 13:28:26] 2025-10-12 17:28:26,631 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:28:26] 2025-10-12 17:28:26,632 | INFO     | traces error code: 0
[2025-10-12 13:28:26] 2025-10-12 17:28:26,632 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:28:26] 2025-10-12 17:28:26,746 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:28:26] 2025-10-12 17:28:26,749 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:28:26] 2025-10-12 17:28:26,751 [wrapper] pilotpid: 33504
[2025-10-12 13:28:26] 2025-10-12 17:28:26,753 [wrapper] Pilot exit status: 0
[2025-10-12 13:28:26] 2025-10-12 17:28:26,762 [wrapper] pandaids: 6840081055
[2025-10-12 13:28:26] 2025-10-12 17:28:26,812 [wrapper] cleanup supervisor_pilot  9732 33505
[2025-10-12 13:28:26] 2025-10-12 17:28:26,814 [wrapper] Test setup, not cleaning
[2025-10-12 13:28:26] 2025-10-12 17:28:26,816 [wrapper] apfmon messages muted
[2025-10-12 13:28:26] 2025-10-12 17:28:26,818 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:28:26] 2025-10-12 17:28:26,820 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:28:26]  *** Error codes and diagnostics ***
[2025-10-12 13:28:26]     "exeErrorCode": 0,
[2025-10-12 13:28:26]     "exeErrorDiag": "",
[2025-10-12 13:28:26]     "pilotErrorCode": 0,
[2025-10-12 13:28:26]     "pilotErrorDiag": "",
[2025-10-12 13:28:26]  *** Listing of results directory ***
[2025-10-12 13:28:26] total 408144
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 09:22 pilot3.tar.gz
[2025-10-12 13:28:26] -rwx------ 1 boincer umatlas     36292 Oct 12 09:25 runpilot2-wrapper.sh
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 09:25 queuedata.json
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:28:26] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:45 run_atlas
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:45 job.xml
[2025-10-12 13:28:26] -rw-r--r-- 2 boincer umatlas 217956225 Oct 12 10:45 EVNT.46676267._003864.pool.root.1
[2025-10-12 13:28:26] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:45 start_atlas.sh
[2025-10-12 13:28:26] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:45 shared
[2025-10-12 13:28:26] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 10:45 input.tar.gz
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:45 boinc_lockfile
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 10:45 pandaJob.out
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas    975528 Oct 12 10:46 agis_schedconf.cvmfs.json
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas   1560580 Oct 12 10:46 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:28:26] drwx------ 5 boincer umatlas      4096 Oct 12 10:46 pilot3
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas      6035 Oct 12 13:22 init_data.xml
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas 192574645 Oct 12 13:26 HITS.46676269._079427.pool.root.1
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:27 boinc_task_state.xml
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas      1046 Oct 12 13:27 memory_monitor_summary.json
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas    401598 Oct 12 13:27 log.46676269._079427.job.log.tgz.1
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas      7827 Oct 12 13:27 heartbeat.json
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas        95 Oct 12 13:28 pilot_heartbeat.json
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:28 wrapper_checkpoint.txt
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:28 boinc_mmap_file
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas      4822 Oct 12 13:28 pilotlog.txt
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas   1350840 Oct 12 13:28 log.46676269._079427.job.log.1
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas       357 Oct 12 13:28 output.list
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:28 runtime_log
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas   1771520 Oct 12 13:28 result.tar.gz
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas      8693 Oct 12 13:28 runtime_log.err
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas       656 Oct 12 13:28 5d6MDmoFBS8n9Rq4apOajLDm4fhM0noT9bVof3QYDmSzTMDmzZBKbn.diag
[2025-10-12 13:28:26] -rw-r--r-- 1 boincer umatlas     20848 Oct 12 13:28 stderr.txt
[2025-10-12 13:28:26] HITS file was successfully produced:
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas 192574645 Oct 12 13:26 shared/HITS.pool.root.1
[2025-10-12 13:28:26]  *** Contents of shared directory: ***
[2025-10-12 13:28:26] total 403224
[2025-10-12 13:28:26] -rw-r--r-- 2 boincer umatlas 217956225 Oct 12 10:45 ATLAS.root_0
[2025-10-12 13:28:26] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:45 start_atlas.sh
[2025-10-12 13:28:26] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 10:45 input.tar.gz
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas 192574645 Oct 12 13:26 HITS.pool.root.1
[2025-10-12 13:28:26] -rw------- 1 boincer umatlas   1771520 Oct 12 13:28 result.tar.gz
13:28:28 (28867): run_atlas exited; CPU time 73130.797337
13:28:28 (28867): called boinc_finish(0)

</stderr_txt>
]]>

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