Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:43:46 (10219): wrapper (7.7.26015): starting
10:43:46 (10219): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 10:43:46] Arguments: --nthreads 12
[2025-10-12 10:43:46] Threads: 12
[2025-10-12 10:43:46] Checking for CVMFS
[2025-10-12 10:43:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:43:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:43:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:43:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:43:46] 2.11.2.0 3035 222971 95796 151623 0 59 15129789 20275200 1 130560 3 108311039 99.984 13656905 12617 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:43:46] CVMFS is ok
[2025-10-12 10:43:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:43:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:43:46] Further information can be found at the LHC@home message board.
[2025-10-12 10:43:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:43:46] Checking for apptainer binary...
[2025-10-12 10:43:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:43:46] Running /usr/bin/apptainer --version
[2025-10-12 10:43:46] apptainer version 1.3.2-1.el7
[2025-10-12 10:43:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:43:48] c-205-31.aglt2.org
[2025-10-12 10:43:48] apptainer works
[2025-10-12 10:43:48] Set ATHENA_PROC_NUMBER=12
[2025-10-12 10:43:48] Set ATHENA_CORE_NUMBER=12
[2025-10-12 10:43:48] Starting ATLAS job with PandaID=6839821264
[2025-10-12 10:43:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:57:16]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:57:16]  storage_token=
[2025-10-12 11:57:16]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839821264/log.46676269._074952.job.log.tgz.1
[2025-10-12 11:57:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/ca/log.46676269._074952.job.log.tgz.1
[2025-10-12 11:57:16]  workdir=None
[2025-10-12 11:57:16] ]
[2025-10-12 11:57:16] 2025-10-12 15:56:05,217 | INFO     | transferring file log.46676269._074952.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839821264/log.46676269._074952.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 11:57:16] 2025-10-12 15:56:05,217 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839821264/log.46676269._074952.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._074952.job
[2025-10-12 11:57:16] 2025-10-12 15:56:05,240 | INFO     | adding to output.list: log.46676269._074952.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/ca/log.46676269._074952.job.log.tg
[2025-10-12 11:57:16] 2025-10-12 15:56:05,241 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 11:57:16] 2025-10-12 15:56:05,242 | INFO     | summary of transferred files:
[2025-10-12 11:57:16] 2025-10-12 15:56:05,242 | INFO     |  -- lfn=log.46676269._074952.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 11:57:16] 2025-10-12 15:56:05,242 | INFO     | stage-out finished correctly
[2025-10-12 11:57:16] 2025-10-12 15:56:05,416 | WARNING  | process 20328 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 11:57:16] 2025-10-12 15:56:05,416 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839821264/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:57:16] 2025-10-12 15:56:05,502 | INFO     | number of running child processes to parent process 20328: 1
[2025-10-12 11:57:16] 2025-10-12 15:56:05,502 | INFO     | maximum number of monitored processes: 6
[2025-10-12 11:57:16] 2025-10-12 15:56:05,590 | INFO     | time since job start (4322s) is within the limit (172800.0s)
[2025-10-12 11:57:16] 2025-10-12 15:56:06,046 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:57:16] 2025-10-12 15:56:06,126 | INFO     | job 6839821264 has state=finished
[2025-10-12 11:57:16] 2025-10-12 15:56:06,126 | INFO     | preparing for final server update for job 6839821264 in state='finished'
[2025-10-12 11:57:16] 2025-10-12 15:56:06,126 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:57:16] 2025-10-12 15:56:06,127 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:57:16] 2025-10-12 15:56:06,127 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:57:16] 2025-10-12 15:56:06,127 | INFO     | job 6839821264 has finished - writing final server update
[2025-10-12 11:57:16] 2025-10-12 15:56:06,127 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:57:16] 2025-10-12 15:56:06,128 | INFO     | executing command: lscpu
[2025-10-12 11:57:16] 2025-10-12 15:56:06,154 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:57:16] 2025-10-12 15:56:07,595 | INFO     | time since job start (4324s) is within the limit (172800.0s)
[2025-10-12 11:57:16] 2025-10-12 15:56:08,005 | INFO     | monitor loop #321: job 0:6839821264 is in state 'finished'
[2025-10-12 11:57:16] 2025-10-12 15:56:08,005 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:57:16] 2025-10-12 15:56:09,601 | INFO     | time since job start (4326s) is within the limit (172800.0s)
[2025-10-12 11:57:16] 2025-10-12 15:56:10,508 | INFO     | monitor loop #322: job 0:6839821264 is in state 'finished'
[2025-10-12 11:57:16] 2025-10-12 15:56:10,509 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:57:16] 2025-10-12 15:56:10,722 | INFO     | PID=13899 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 11:57:16] 2025-10-12 15:56:10,837 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 11:57:16] 2025-10-12 15:56:10,840 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 11:57:16] 2025-10-12 15:56:10,843 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839821264/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:57:16] 2025-10-12 15:56:10,844 | INFO     | extracted standard info from prmon json
[2025-10-12 11:57:16] 2025-10-12 15:56:10,844 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:57:16] 2025-10-12 15:56:10,844 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:57:16] 2025-10-12 15:56:10,845 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:57:16] 2025-10-12 15:56:10,845 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:57:16] 2025-10-12 15:56:10,846 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:57:16] 2025-10-12 15:56:10,847 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 11:57:16] 2025-10-12 15:56:10,847 | INFO     | sum of deviations: -7746211087.0
[2025-10-12 11:57:16] 2025-10-12 15:56:10,847 | INFO     | mean x: 1760282498.5
[2025-10-12 11:57:16] 2025-10-12 15:56:10,847 | INFO     | mean y: 2798869.21875
[2025-10-12 11:57:16] 2025-10-12 15:56:10,847 | INFO     | -- intersect: 167790218235.0589
[2025-10-12 11:57:16] 2025-10-12 15:56:10,848 | INFO     | intersect: 167790218235.0589
[2025-10-12 11:57:16] 2025-10-12 15:56:10,848 | INFO     | chi2: 0.05491199724569611
[2025-10-12 11:57:16] 2025-10-12 15:56:10,848 | INFO     | -- intersect: 167790218235.0589
[2025-10-12 11:57:16] 2025-10-12 15:56:10,848 | INFO     | current memory leak: -95.32 B/s (using 64 data points, chi2=0.05)
[2025-10-12 11:57:16] 2025-10-12 15:56:10,848 | INFO     | could have reported an average CPU frequency of 2072 MHz (6 samples)
[2025-10-12 11:57:16] 2025-10-12 15:56:10,848 | INFO     | ..............................
[2025-10-12 11:57:16] 2025-10-12 15:56:10,849 | INFO     | . Timing measurements:
[2025-10-12 11:57:16] 2025-10-12 15:56:10,849 | INFO     | . get job = 0 s
[2025-10-12 11:57:16] 2025-10-12 15:56:10,849 | INFO     | . initial setup = 2 s
[2025-10-12 11:57:16] 2025-10-12 15:56:10,849 | INFO     | . payload setup = 7 s
[2025-10-12 11:57:16] 2025-10-12 15:56:10,849 | INFO     | . stage-in = 0 s
[2025-10-12 11:57:16] 2025-10-12 15:56:10,849 | INFO     | . payload execution = 4294 s
[2025-10-12 11:57:16] 2025-10-12 15:56:10,849 | INFO     | . stage-out = 0 s
[2025-10-12 11:57:16] 2025-10-12 15:56:10,849 | INFO     | . log creation = 0 s
[2025-10-12 11:57:16] 2025-10-12 15:56:10,849 | INFO     | ..............................
[2025-10-12 11:57:16] 2025-10-12 15:56:10,962 | INFO     | 
[2025-10-12 11:57:16] 2025-10-12 15:56:10,963 | INFO     | job summary report
[2025-10-12 11:57:16] 2025-10-12 15:56:10,963 | INFO     | --------------------------------------------------
[2025-10-12 11:57:16] 2025-10-12 15:56:10,963 | INFO     | PanDA job id: 6839821264
[2025-10-12 11:57:16] 2025-10-12 15:56:10,963 | INFO     | task id: 46676269
[2025-10-12 11:57:16] 2025-10-12 15:56:10,963 | INFO     | errors: (none)
[2025-10-12 11:57:16] 2025-10-12 15:56:10,963 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:57:16] 2025-10-12 15:56:10,964 | INFO     | pilot state: finished 
[2025-10-12 11:57:16] 2025-10-12 15:56:10,964 | INFO     | transexitcode: 0
[2025-10-12 11:57:16] 2025-10-12 15:56:10,964 | INFO     | exeerrorcode: 0
[2025-10-12 11:57:16] 2025-10-12 15:56:10,964 | INFO     | exeerrordiag: 
[2025-10-12 11:57:16] 2025-10-12 15:56:10,964 | INFO     | exitcode: 0
[2025-10-12 11:57:16] 2025-10-12 15:56:10,964 | INFO     | exitmsg: OK
[2025-10-12 11:57:16] 2025-10-12 15:56:10,965 | INFO     | cpuconsumptiontime: 46829 s
[2025-10-12 11:57:16] 2025-10-12 15:56:10,965 | INFO     | nevents: 400
[2025-10-12 11:57:16] 2025-10-12 15:56:10,965 | INFO     | neventsw: 0
[2025-10-12 11:57:16] 2025-10-12 15:56:10,965 | INFO     | pid: 20328
[2025-10-12 11:57:16] 2025-10-12 15:56:10,965 | INFO     | pgrp: 20328
[2025-10-12 11:57:16] 2025-10-12 15:56:10,965 | INFO     | corecount: 12
[2025-10-12 11:57:16] 2025-10-12 15:56:10,965 | INFO     | event service: False
[2025-10-12 11:57:16] 2025-10-12 15:56:10,965 | INFO     | sizes: {0: 2348856, 5: 2349118, 11: 2349174, 4304: 2375146, 4305: 2384199, 4306: 2384199, 4311: 2384521}
[2025-10-12 11:57:16] 2025-10-12 15:56:10,965 | INFO     | --------------------------------------------------
[2025-10-12 11:57:16] 2025-10-12 15:56:10,966 | INFO     | 
[2025-10-12 11:57:16] 2025-10-12 15:56:10,966 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 11:57:16] 2025-10-12 15:56:10,991 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,991 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,992 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,992 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,992 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,992 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,992 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,992 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,993 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,993 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,993 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,993 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,993 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,993 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,994 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,994 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,994 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,994 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:57:16] 2025-10-12 15:56:10,994 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,994 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:57:16] 2025-10-12 15:56:10,995 | INFO     | job 6839821264 has completed (purged errors)
[2025-10-12 11:57:16] 2025-10-12 15:56:10,995 | INFO     | overall cleanup function is called
[2025-10-12 11:57:16] 2025-10-12 15:56:12,003 | INFO     | --- collectZombieJob: --- 10, [20328]
[2025-10-12 11:57:16] 2025-10-12 15:56:12,003 | INFO     | zombie collector waiting for pid 20328
[2025-10-12 11:57:16] 2025-10-12 15:56:12,003 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:57:16] 2025-10-12 15:56:12,003 | INFO     | collected zombie processes
[2025-10-12 11:57:16] 2025-10-12 15:56:12,003 | INFO     | will attempt to kill all subprocesses of pid=20328
[2025-10-12 11:57:16] 2025-10-12 15:56:12,097 | INFO     | process IDs to be killed: [20328] (in reverse order)
[2025-10-12 11:57:16] 2025-10-12 15:56:12,149 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:57:16] 2025-10-12 15:56:12,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:57:16] 2025-10-12 15:56:12,153 | INFO     | did not find any defunct processes belonging to 20328
[2025-10-12 11:57:16] 2025-10-12 15:56:12,156 | INFO     | did not find any defunct processes belonging to 20328
[2025-10-12 11:57:16] 2025-10-12 15:56:12,156 | INFO     | ready for new job
[2025-10-12 11:57:16] 2025-10-12 15:56:12,156 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:57:16] 2025-10-12 15:56:12,158 | INFO     | ***************************************
[2025-10-12 11:57:16] 2025-10-12 15:56:12,158 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:57:16] 2025-10-12 15:56:12,158 | INFO     | ***************************************
[2025-10-12 11:57:16] 2025-10-12 15:56:12,158 | INFO     | 
[2025-10-12 11:57:16] 2025-10-12 15:56:12,158 | INFO     | architecture information:
[2025-10-12 11:57:16] 2025-10-12 15:56:12,159 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:57:16] 2025-10-12 15:56:12,173 | INFO     | cat /etc/os-release:
[2025-10-12 11:57:16] NAME="CentOS Linux"
[2025-10-12 11:57:16] VERSION="7 (Core)"
[2025-10-12 11:57:16] ID="centos"
[2025-10-12 11:57:16] ID_LIKE="rhel fedora"
[2025-10-12 11:57:16] VERSION_ID="7"
[2025-10-12 11:57:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:57:16] ANSI_COLOR="0;31"
[2025-10-12 11:57:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:57:16] HOME_URL="https://www.centos.org/"
[2025-10-12 11:57:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:57:16] 
[2025-10-12 11:57:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:57:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:57:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:57:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:57:16] 
[2025-10-12 11:57:16] 2025-10-12 15:56:12,174 | INFO     | ***************************************
[2025-10-12 11:57:16] 2025-10-12 15:56:12,677 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:57:16] 2025-10-12 15:56:12,694 | INFO     | sufficient remaining disk space (29366419456 B)
[2025-10-12 11:57:16] 2025-10-12 15:56:12,694 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:57:16] 2025-10-12 15:56:12,695 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:57:16] 2025-10-12 15:56:12,695 | INFO     | update_server=False
[2025-10-12 11:57:16] 2025-10-12 15:56:12,695 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:57:16] 2025-10-12 15:56:12,695 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:57:16] 2025-10-12 15:56:12,696 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:57:16] 2025-10-12 15:56:12,743 | INFO     | all payload control threads have been joined
[2025-10-12 11:57:16] 2025-10-12 15:56:12,749 | INFO     | all data control threads have been joined
[2025-10-12 11:57:16] 2025-10-12 15:56:13,012 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 11:57:16] 2025-10-12 15:56:13,012 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 11:57:16] 2025-10-12 15:56:13,012 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:57:16] 2025-10-12 15:56:13,012 | INFO     | will abort loop
[2025-10-12 11:57:16] 2025-10-12 15:56:13,337 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:57:16] 2025-10-12 15:56:13,698 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:13,701 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:13,710 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:13,748 | INFO     | [payload] control thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:13,752 | INFO     | [data] control thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:13,945 | INFO     | all job control threads have been joined
[2025-10-12 11:57:16] 2025-10-12 15:56:14,018 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:14,143 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:14,421 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:14,454 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:14,941 | INFO     | [job] validate thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:14,942 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:14,950 | INFO     | [job] control thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:15,103 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:15,343 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:16,702 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:23,603 | INFO     | job.realtimelogging is not enabled
[2025-10-12 11:57:16] 2025-10-12 15:56:24,608 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:57:16] 2025-10-12 15:56:42,912 | INFO     | PID=13899 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 11:57:16] 2025-10-12 15:56:42,912 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:57:16] 2025-10-12 15:56:42,913 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:57:16] 2025-10-12 15:56:42,913 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:57:16] 2025-10-12 15:57:09,593 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:57:16] 2025-10-12 15:57:11,594 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140702474979136)>', '<ExcThread(monitor, started 140702012909312)>']
[2025-10-12 11:57:16] 2025-10-12 15:57:12,049 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:57:16] 2025-10-12 15:57:12,049 | INFO     | [monitor] control thread has ended
[2025-10-12 11:57:16] 2025-10-12 15:57:16,601 | INFO     | all workflow threads have been joined
[2025-10-12 11:57:16] 2025-10-12 15:57:16,601 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:57:16] 2025-10-12 15:57:16,601 | INFO     | traces error code: 0
[2025-10-12 11:57:16] 2025-10-12 15:57:16,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:57:16] 2025-10-12 15:57:16,694 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:57:16] 2025-10-12 15:57:16,698 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:57:16] 2025-10-12 15:57:16,702 [wrapper] pilotpid: 13899
[2025-10-12 11:57:16] 2025-10-12 15:57:16,706 [wrapper] Pilot exit status: 0
[2025-10-12 11:57:16] 2025-10-12 15:57:16,720 [wrapper] pandaids: 6839821264
[2025-10-12 11:57:16] 2025-10-12 15:57:16,767 [wrapper] cleanup supervisor_pilot 29518 13900
[2025-10-12 11:57:16] 2025-10-12 15:57:16,771 [wrapper] Test setup, not cleaning
[2025-10-12 11:57:16] 2025-10-12 15:57:16,775 [wrapper] apfmon messages muted
[2025-10-12 11:57:16] 2025-10-12 15:57:16,779 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:57:16] 2025-10-12 15:57:16,783 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:57:16]  *** Error codes and diagnostics ***
[2025-10-12 11:57:16]     "exeErrorCode": 0,
[2025-10-12 11:57:16]     "exeErrorDiag": "",
[2025-10-12 11:57:16]     "pilotErrorCode": 0,
[2025-10-12 11:57:16]     "pilotErrorDiag": "",
[2025-10-12 11:57:16]  *** Listing of results directory ***
[2025-10-12 11:57:16] total 412596
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 04:52 pilot3.tar.gz
[2025-10-12 11:57:16] -rwx------ 1 boincer umatlas     36292 Oct 12 05:00 runpilot2-wrapper.sh
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 05:00 queuedata.json
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:57:16] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:43 run_atlas
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:43 job.xml
[2025-10-12 11:57:16] -rw-r--r-- 2 boincer umatlas 219206879 Oct 12 10:43 EVNT.46676267._003558.pool.root.1
[2025-10-12 11:57:16] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:43 start_atlas.sh
[2025-10-12 11:57:16] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:43 shared
[2025-10-12 11:57:16] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 10:43 input.tar.gz
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:43 boinc_lockfile
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 10:43 pandaJob.out
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas    975528 Oct 12 10:44 agis_schedconf.cvmfs.json
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas   1560580 Oct 12 10:44 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:57:16] drwx------ 5 boincer umatlas      4096 Oct 12 10:44 pilot3
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 11:55 init_data.xml
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas 197356542 Oct 12 11:55 HITS.46676269._074952.pool.root.1
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas       530 Oct 12 11:55 boinc_task_state.xml
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas        95 Oct 12 11:56 pilot_heartbeat.json
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas      1050 Oct 12 11:56 memory_monitor_summary.json
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas    387366 Oct 12 11:56 log.46676269._074952.job.log.tgz.1
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas      7857 Oct 12 11:56 heartbeat.json
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas        27 Oct 12 11:57 wrapper_checkpoint.txt
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 11:57 boinc_mmap_file
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas      5004 Oct 12 11:57 pilotlog.txt
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas    629580 Oct 12 11:57 log.46676269._074952.job.log.1
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas       357 Oct 12 11:57 output.list
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas       620 Oct 12 11:57 runtime_log
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas   1034240 Oct 12 11:57 result.tar.gz
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 11:57 runtime_log.err
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas       659 Oct 12 11:57 IvdMDmE76R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzGjNDmFWddln.diag
[2025-10-12 11:57:16] -rw-r--r-- 1 boincer umatlas     22250 Oct 12 11:57 stderr.txt
[2025-10-12 11:57:16] HITS file was successfully produced:
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas 197356542 Oct 12 11:55 shared/HITS.pool.root.1
[2025-10-12 11:57:16]  *** Contents of shared directory: ***
[2025-10-12 11:57:16] total 408396
[2025-10-12 11:57:16] -rw-r--r-- 2 boincer umatlas 219206879 Oct 12 10:43 ATLAS.root_0
[2025-10-12 11:57:16] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:43 start_atlas.sh
[2025-10-12 11:57:16] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 10:43 input.tar.gz
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas 197356542 Oct 12 11:55 HITS.pool.root.1
[2025-10-12 11:57:16] -rw------- 1 boincer umatlas   1034240 Oct 12 11:57 result.tar.gz
11:57:18 (10219): run_atlas exited; CPU time 46806.606743
11:57:18 (10219): called boinc_finish(0)

</stderr_txt>
]]>

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