Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:24:23 (4094171): wrapper (7.7.26015): starting
11:24:23 (4094171): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 11:24:23] Arguments: --nthreads 9
[2025-10-12 11:24:23] Threads: 9
[2025-10-12 11:24:23] Checking for CVMFS
[2025-10-12 11:24:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:24:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:24:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:24:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:24:26] 2.13.2.0 831533 129420 282224 151625 1 385 30234061 32935936 43921 16776704 0 274664545 99.649 248915120 20480 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 11:24:26] CVMFS is ok
[2025-10-12 11:24:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:24:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:24:26] Further information can be found at the LHC@home message board.
[2025-10-12 11:24:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:24:26] Checking for apptainer binary...
[2025-10-12 11:24:26] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:24:26] Running /usr/bin/apptainer --version
[2025-10-12 11:24:26] apptainer version 1.4.3-1.el9
[2025-10-12 11:24:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:24:47] c6-2-11-2.aglt2.org
[2025-10-12 11:24:47] apptainer works
[2025-10-12 11:24:47] Set ATHENA_PROC_NUMBER=9
[2025-10-12 11:24:47] Set ATHENA_CORE_NUMBER=9
[2025-10-12 11:24:47] Starting ATLAS job with PandaID=6839820730
[2025-10-12 11:24:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:40:12 (4094171): BOINC client no longer exists - exiting
12:40:12 (4094171): timer handler: client dead, exiting
12:45:46 (329259): wrapper (7.7.26015): starting
12:45:46 (329259): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 12:45:46] Arguments: --nthreads 9
[2025-10-12 12:45:46] Threads: 9
[2025-10-12 12:45:46] This job has been restarted, cleaning up previous attempt
[2025-10-12 12:45:46] Checking for CVMFS
[2025-10-12 12:45:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 12:45:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 12:45:47] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 12:45:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 12:45:47] 2.13.2.0 831533 129501 278320 151627 0 378 30443560 32935937 39679 16776704 0 275240264 99.650 248962300 20478 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 12:45:47] CVMFS is ok
[2025-10-12 12:45:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 12:45:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 12:45:47] Further information can be found at the LHC@home message board.
[2025-10-12 12:45:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 12:45:47] Checking for apptainer binary...
[2025-10-12 12:45:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 12:45:47] Running /usr/bin/apptainer --version
[2025-10-12 12:45:47] apptainer version 1.4.3-1.el9
[2025-10-12 12:45:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 12:45:48] c6-2-11-2.aglt2.org
[2025-10-12 12:45:48] apptainer works
[2025-10-12 12:45:48] Set ATHENA_PROC_NUMBER=9
[2025-10-12 12:45:48] Set ATHENA_CORE_NUMBER=9
[2025-10-12 12:45:48] Starting ATLAS job with PandaID=6839820730
[2025-10-12 12:45:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:33:32]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:33:32] 2025-10-12 23:32:55,214 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:33:32] 2025-10-12 23:32:55,231 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:33:32] 2025-10-12 23:32:55,232 | INFO     | sum of square deviations: 19696526699.894768
[2025-10-12 19:33:32] 2025-10-12 23:32:55,238 | INFO     | sum of deviations: 122122470729.36848
[2025-10-12 19:33:32] 2025-10-12 23:32:55,252 | INFO     | mean x: 1760299796.0526316
[2025-10-12 19:33:32] 2025-10-12 23:32:55,253 | INFO     | mean y: 2136095.030075188
[2025-10-12 19:33:32] 2025-10-12 23:32:55,253 | INFO     | -- intersect: -10912080588.640318
[2025-10-12 19:33:32] 2025-10-12 23:32:55,253 | INFO     | intersect: -10912080588.640318
[2025-10-12 19:33:32] 2025-10-12 23:32:55,253 | INFO     | chi2: 3.8866304375575216
[2025-10-12 19:33:32] 2025-10-12 23:32:55,254 | INFO     | sum of square deviations: 18965291487.380733
[2025-10-12 19:33:32] 2025-10-12 23:32:55,267 | INFO     | sum of deviations: 164171243486.0405
[2025-10-12 19:33:32] 2025-10-12 23:32:55,267 | INFO     | mean x: 1760299643.5532994
[2025-10-12 19:33:32] 2025-10-12 23:32:55,267 | INFO     | mean y: 2144797.545685279
[2025-10-12 19:33:32] 2025-10-12 23:32:55,267 | INFO     | -- intersect: -15235721785.336508
[2025-10-12 19:33:32] 2025-10-12 23:32:55,267 | INFO     | intersect: -15235721785.336508
[2025-10-12 19:33:32] 2025-10-12 23:32:55,268 | INFO     | chi2: 2.541924428649396
[2025-10-12 19:33:32] 2025-10-12 23:32:55,271 | INFO     | current chi2=2.541924428649396 (change=34.598247261017704 %)
[2025-10-12 19:33:32] 2025-10-12 23:32:55,271 | INFO     | sum of square deviations: 18252382199.866352
[2025-10-12 19:33:32] 2025-10-12 23:32:55,287 | INFO     | sum of deviations: 159755686562.8174
[2025-10-12 19:33:32] 2025-10-12 23:32:55,287 | INFO     | mean x: 1760299491.0539846
[2025-10-12 19:33:32] 2025-10-12 23:32:55,287 | INFO     | mean y: 2143852.2467866326
[2025-10-12 19:33:32] 2025-10-12 23:32:55,287 | INFO     | -- intersect: -15405042490.342869
[2025-10-12 19:33:32] 2025-10-12 23:32:55,287 | INFO     | intersect: -15405042490.342869
[2025-10-12 19:33:32] 2025-10-12 23:32:55,288 | INFO     | chi2: 2.541635950903515
[2025-10-12 19:33:32] 2025-10-12 23:32:55,288 | INFO     | current chi2=2.541635950903515 (change=0.011348793167474261 %)
[2025-10-12 19:33:32] 2025-10-12 23:32:55,288 | INFO     | right removable region: 388
[2025-10-12 19:33:32] 2025-10-12 23:32:55,289 | INFO     | sum of square deviations: 18965278677.380737
[2025-10-12 19:33:32] 2025-10-12 23:32:55,295 | INFO     | sum of deviations: 44550221902.37053
[2025-10-12 19:33:32] 2025-10-12 23:32:55,299 | INFO     | mean x: 1760299948.5532994
[2025-10-12 19:33:32] 2025-10-12 23:32:55,300 | INFO     | mean y: 2152231.7918781727
[2025-10-12 19:33:32] 2025-10-12 23:32:55,300 | INFO     | -- intersect: -4132864957.0834928
[2025-10-12 19:33:32] 2025-10-12 23:32:55,300 | INFO     | intersect: -4132864957.0834928
[2025-10-12 19:33:32] 2025-10-12 23:32:55,300 | INFO     | chi2: 1.8561853891147235
[2025-10-12 19:33:32] 2025-10-12 23:32:55,300 | INFO     | current chi2=1.8561853891147235 (change=52.24178323779074 %)
[2025-10-12 19:33:32] 2025-10-12 23:32:55,301 | INFO     | sum of square deviations: 18252380734.971714
[2025-10-12 19:33:32] 2025-10-12 23:32:55,310 | INFO     | sum of deviations: 15300388009.750618
[2025-10-12 19:33:32] 2025-10-12 23:32:55,311 | INFO     | mean x: 1760300101.0514138
[2025-10-12 19:33:32] 2025-10-12 23:32:55,311 | INFO     | mean y: 2158486.3624678664
[2025-10-12 19:33:32] 2025-10-12 23:32:55,311 | INFO     | -- intersect: -1473444885.6450794
[2025-10-12 19:33:32] 2025-10-12 23:32:55,311 | INFO     | intersect: -1473444885.6450794
[2025-10-12 19:33:32] 2025-10-12 23:32:55,312 | INFO     | chi2: 1.6102127434413318
[2025-10-12 19:33:32] 2025-10-12 23:32:55,312 | INFO     | current chi2=1.6102127434413318 (change=13.251512866971993 %)
[2025-10-12 19:33:32] 2025-10-12 23:32:55,312 | INFO     | left removable region: 20
[2025-10-12 19:33:32] 2025-10-12 23:32:55,312 | INFO     | sum of square deviations: 15453029917.019066
[2025-10-12 19:33:32] 2025-10-12 23:32:55,332 | INFO     | sum of deviations: 34831316459.62769
[2025-10-12 19:33:32] 2025-10-12 23:32:55,333 | INFO     | mean x: 1760300070.5516305
[2025-10-12 19:33:32] 2025-10-12 23:32:55,333 | INFO     | mean y: 2171385.2038043477
[2025-10-12 19:33:32] 2025-10-12 23:32:55,333 | INFO     | -- intersect: -3965566278.5770445
[2025-10-12 19:33:32] 2025-10-12 23:32:55,333 | INFO     | intersect: -3965566278.5770445
[2025-10-12 19:33:32] 2025-10-12 23:32:55,333 | INFO     | chi2: 0.14390538976505457
[2025-10-12 19:33:32] 2025-10-12 23:32:55,333 | INFO     | -- intersect: -3965566278.5770445
[2025-10-12 19:33:32] 2025-10-12 23:32:55,334 | INFO     | current memory leak: 2.25 B/s (using 368 data points, chi2=0.14)
[2025-10-12 19:33:32] 2025-10-12 23:32:55,334 | INFO     | could have reported an average CPU frequency of 2674 MHz (17 samples)
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | ..............................
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | . Timing measurements:
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | . get job = 0 s
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | . initial setup = 1 s
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | . payload setup = 19 s
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | . stage-in = 0 s
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | . payload execution = 24302 s
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | . stage-out = 6 s
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | . log creation = 1 s
[2025-10-12 19:33:32] 2025-10-12 23:32:55,335 | INFO     | ..............................
[2025-10-12 19:33:32] 2025-10-12 23:32:56,179 | INFO     | 
[2025-10-12 19:33:32] 2025-10-12 23:32:56,179 | INFO     | job summary report
[2025-10-12 19:33:32] 2025-10-12 23:32:56,187 | INFO     | --------------------------------------------------
[2025-10-12 19:33:32] 2025-10-12 23:32:56,187 | INFO     | PanDA job id: 6839820730
[2025-10-12 19:33:32] 2025-10-12 23:32:56,187 | INFO     | task id: 46676269
[2025-10-12 19:33:32] 2025-10-12 23:32:56,187 | INFO     | errors: (none)
[2025-10-12 19:33:32] 2025-10-12 23:32:56,187 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | pilot state: finished 
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | transexitcode: 0
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | exeerrorcode: 0
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | exeerrordiag: 
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | exitcode: 0
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | exitmsg: OK
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | cpuconsumptiontime: 49265 s
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | nevents: 400
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | neventsw: 0
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | pid: 380967
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | pgrp: 380967
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | corecount: 9
[2025-10-12 19:33:32] 2025-10-12 23:32:56,188 | INFO     | event service: False
[2025-10-12 19:33:32] 2025-10-12 23:32:56,189 | INFO     | sizes: {0: 2348635, 1: 2348834, 12: 2348834, 15: 2349124, 23: 2349152, 24326: 2384076, 24334: 2393074, 24335: 2393130, 24359: 2393388}
[2025-10-12 19:33:32] 2025-10-12 23:32:56,189 | INFO     | --------------------------------------------------
[2025-10-12 19:33:32] 2025-10-12 23:32:56,189 | INFO     | 
[2025-10-12 19:33:32] 2025-10-12 23:32:56,189 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 19:33:32] 2025-10-12 23:32:56,287 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,288 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | job 6839820730 has completed (purged errors)
[2025-10-12 19:33:32] 2025-10-12 23:32:56,289 | INFO     | overall cleanup function is called
[2025-10-12 19:33:32] 2025-10-12 23:32:57,318 | INFO     | --- collectZombieJob: --- 10, [380967]
[2025-10-12 19:33:32] 2025-10-12 23:32:57,318 | INFO     | zombie collector waiting for pid 380967
[2025-10-12 19:33:32] 2025-10-12 23:32:57,318 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:33:32] 2025-10-12 23:32:57,319 | INFO     | collected zombie processes
[2025-10-12 19:33:32] 2025-10-12 23:32:57,319 | INFO     | will attempt to kill all subprocesses of pid=380967
[2025-10-12 19:33:32] 2025-10-12 23:33:00,924 | INFO     | process IDs to be killed: [380967] (in reverse order)
[2025-10-12 19:33:32] 2025-10-12 23:33:01,424 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:33:32] 2025-10-12 23:33:01,425 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:33:32] 2025-10-12 23:33:01,574 | INFO     | did not find any defunct processes belonging to 380967
[2025-10-12 19:33:32] 2025-10-12 23:33:01,733 | INFO     | did not find any defunct processes belonging to 380967
[2025-10-12 19:33:32] 2025-10-12 23:33:01,734 | INFO     | ready for new job
[2025-10-12 19:33:32] 2025-10-12 23:33:01,734 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:33:32] 2025-10-12 23:33:01,752 | INFO     | ***************************************
[2025-10-12 19:33:32] 2025-10-12 23:33:01,752 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:33:32] 2025-10-12 23:33:01,752 | INFO     | ***************************************
[2025-10-12 19:33:32] 2025-10-12 23:33:01,752 | INFO     | 
[2025-10-12 19:33:32] 2025-10-12 23:33:01,798 | INFO     | architecture information:
[2025-10-12 19:33:32] 2025-10-12 23:33:01,807 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:33:32] 2025-10-12 23:33:01,912 | INFO     | cat /etc/os-release:
[2025-10-12 19:33:32] NAME="CentOS Linux"
[2025-10-12 19:33:32] VERSION="7 (Core)"
[2025-10-12 19:33:32] ID="centos"
[2025-10-12 19:33:32] ID_LIKE="rhel fedora"
[2025-10-12 19:33:32] VERSION_ID="7"
[2025-10-12 19:33:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:33:32] ANSI_COLOR="0;31"
[2025-10-12 19:33:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:33:32] HOME_URL="https://www.centos.org/"
[2025-10-12 19:33:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:33:32] 
[2025-10-12 19:33:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:33:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:33:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:33:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:33:32] 
[2025-10-12 19:33:32] 2025-10-12 23:33:01,912 | INFO     | ***************************************
[2025-10-12 19:33:32] 2025-10-12 23:33:02,416 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 19:33:32] 2025-10-12 23:33:02,496 | INFO     | sufficient remaining disk space (94032101376 B)
[2025-10-12 19:33:32] 2025-10-12 23:33:02,496 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:33:32] 2025-10-12 23:33:02,497 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:33:32] 2025-10-12 23:33:02,497 | INFO     | update_server=False
[2025-10-12 19:33:32] 2025-10-12 23:33:02,497 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:33:32] 2025-10-12 23:33:02,497 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:33:32] 2025-10-12 23:33:02,740 | INFO     | all data control threads have been joined
[2025-10-12 19:33:32] 2025-10-12 23:33:02,807 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 19:33:32] 2025-10-12 23:33:02,807 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 19:33:32] 2025-10-12 23:33:02,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:33:32] 2025-10-12 23:33:02,808 | INFO     | will abort loop
[2025-10-12 19:33:32] 2025-10-12 23:33:03,360 | INFO     | all job control threads have been joined
[2025-10-12 19:33:32] 2025-10-12 23:33:03,504 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:03,663 | INFO     | all payload control threads have been joined
[2025-10-12 19:33:32] 2025-10-12 23:33:03,746 | INFO     | [data] control thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:03,807 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:03,830 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:04,281 | INFO     | [job] validate thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:04,314 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:04,366 | INFO     | [job] control thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:04,478 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:04,504 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:04,670 | INFO     | [payload] control thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:04,806 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:33:32] 2025-10-12 23:33:04,810 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:04,961 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:05,010 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:05,011 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:05,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:33:32] 2025-10-12 23:33:06,223 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:07,055 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:33:32] 2025-10-12 23:33:08,815 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:33:32] 2025-10-12 23:33:08,832 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140192546318144)>', '<ExcThread(monitor, started 140192195262208)>']
[2025-10-12 19:33:32] 2025-10-12 23:33:13,858 | INFO     | all workflow threads have been joined
[2025-10-12 19:33:32] 2025-10-12 23:33:13,858 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:33:32] 2025-10-12 23:33:13,873 | INFO     | traces error code: 0
[2025-10-12 19:33:32] 2025-10-12 23:33:13,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:33:32] 2025-10-12 23:33:30,473 | INFO     | PID=348379 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 19:33:32] 2025-10-12 23:33:30,492 | INFO     | .. there are 44 such processes running
[2025-10-12 19:33:32] 2025-10-12 23:33:30,494 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:33:32] 2025-10-12 23:33:30,494 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:33:32] 2025-10-12 23:33:30,494 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:33:32] 2025-10-12 23:33:30,494 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:33:32] 2025-10-12 23:33:30,495 | INFO     | [monitor] control thread has ended
[2025-10-12 19:33:32] 2025-10-12 23:33:31,564 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:33:32] 2025-10-12 23:33:31,586 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:33:32] 2025-10-12 23:33:31,609 [wrapper] pilotpid: 348379
[2025-10-12 19:33:32] 2025-10-12 23:33:31,620 [wrapper] Pilot exit status: 0
[2025-10-12 19:33:32] 2025-10-12 23:33:31,643 [wrapper] pandaids: 6839820730 6839820730
[2025-10-12 19:33:32] 2025-10-12 23:33:31,827 [wrapper] cleanup supervisor_pilot 2036917 348380
[2025-10-12 19:33:32] 2025-10-12 23:33:31,843 [wrapper] Test setup, not cleaning
[2025-10-12 19:33:32] 2025-10-12 23:33:31,883 [wrapper] apfmon messages muted
[2025-10-12 19:33:32] 2025-10-12 23:33:31,917 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:33:32] 2025-10-12 23:33:31,932 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:33:32]  *** Error codes and diagnostics ***
[2025-10-12 19:33:32]     "exeErrorCode": 0,
[2025-10-12 19:33:32]     "exeErrorDiag": "",
[2025-10-12 19:33:32]     "pilotErrorCode": 0,
[2025-10-12 19:33:32]     "pilotErrorDiag": "",
[2025-10-12 19:33:32]  *** Listing of results directory ***
[2025-10-12 19:33:32] total 636688
[2025-10-12 19:33:32] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 04:37 pilot3.tar.gz
[2025-10-12 19:33:32] -rwx------. 1 boincer umatlas     36292 Oct 12 04:51 runpilot2-wrapper.sh
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 04:51 queuedata.json
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas       100 Oct 12 11:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:33:32] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 11:24 run_atlas
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas       105 Oct 12 11:24 job.xml
[2025-10-12 19:33:32] -rw-r--r--. 3 boincer umatlas 221103335 Oct 12 11:24 EVNT.46676267._003552.pool.root.1
[2025-10-12 19:33:32] -rw-r--r--. 3 boincer umatlas 221103335 Oct 12 11:24 ATLAS.root_0
[2025-10-12 19:33:32] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 11:24 input.tar.gz
[2025-10-12 19:33:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:24 start_atlas.sh
[2025-10-12 19:33:32] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 11:24 shared
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas         0 Oct 12 11:24 boinc_lockfile
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 12:45 pandaJob.out
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas    975528 Oct 12 12:46 agis_schedconf.cvmfs.json
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas 199142259 Oct 12 19:30 HITS.46676269._074796.pool.root.1
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas      6857 Oct 12 19:30 init_data.xml
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas       531 Oct 12 19:30 boinc_task_state.xml
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas      1064 Oct 12 19:32 memory_monitor_summary.json
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas   1560580 Oct 12 19:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas    587164 Oct 12 19:32 log.46676269._074796.job.log.tgz.1
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas      7836 Oct 12 19:32 heartbeat.json
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 19:33 boinc_mmap_file
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas        28 Oct 12 19:33 wrapper_checkpoint.txt
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas        96 Oct 12 19:33 pilot_heartbeat.json
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas       822 Oct 12 19:33 pilotlog.txt
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas   2772930 Oct 12 19:33 log.46676269._074796.job.log.1
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas       357 Oct 12 19:33 output.list
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas       620 Oct 12 19:33 runtime_log
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas   3379200 Oct 12 19:33 result.tar.gz
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas       785 Oct 12 19:33 t7gKDmFz6R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGFjNDmC1l5tn.diag
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas      8794 Oct 12 19:33 runtime_log.err
[2025-10-12 19:33:32] -rw-r--r--. 1 boincer umatlas     23325 Oct 12 19:33 stderr.txt
[2025-10-12 19:33:32] HITS file was successfully produced:
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas 199142259 Oct 12 19:30 shared/HITS.pool.root.1
[2025-10-12 19:33:32]  *** Contents of shared directory: ***
[2025-10-12 19:33:32] total 414280
[2025-10-12 19:33:32] -rw-r--r--. 3 boincer umatlas 221103335 Oct 12 11:24 ATLAS.root_0
[2025-10-12 19:33:32] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 11:24 input.tar.gz
[2025-10-12 19:33:32] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:24 start_atlas.sh
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas 199142259 Oct 12 19:30 HITS.pool.root.1
[2025-10-12 19:33:32] -rw-------. 1 boincer umatlas   3379200 Oct 12 19:33 result.tar.gz
19:33:33 (329259): run_atlas exited; CPU time 50638.509575
19:33:33 (329259): called boinc_finish(0)

</stderr_txt>
]]>

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