Stderr output

<core_client_version>8.3.0</core_client_version>
<![CDATA[
<stderr_txt>
18:35:55 (4544): wrapper (7.7.26015): starting
18:35:55 (4544): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 18:35:55] Arguments: --nthreads 8
[2025-10-12 18:35:55] Threads: 8
[2025-10-12 18:35:55] Checking for CVMFS
[2025-10-12 18:35:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 18:35:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 18:35:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 18:35:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 18:35:55] 2.11.0.0 14017 1117 47832 151627 2 134 1085040 4096000 517 130560 0 72128 97.909 384264 1150 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2025-10-12 18:35:55] CVMFS is ok
[2025-10-12 18:35:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 18:35:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 18:35:55] Further information can be found at the LHC@home message board.
[2025-10-12 18:35:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 18:35:55] Checking for apptainer binary...
[2025-10-12 18:35:55] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2025-10-12 18:35:55] apptainer is not installed, using version from CVMFS
[2025-10-12 18:35:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 18:35:55] WARNING: Environment variable TMPDIR already has value [/tmp/job_10517464/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node117
[2025-10-12 18:35:55] apptainer works
[2025-10-12 18:35:55] Set ATHENA_PROC_NUMBER=8
[2025-10-12 18:35:55] Set ATHENA_CORE_NUMBER=8
[2025-10-12 18:35:55] Starting ATLAS job with PandaID=6839591855
[2025-10-12 18:35:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_10517464/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 19:29:27]  *** The last 200 lines of the pilot log: ***
[2025-10-12 19:29:27]  is_altstaged=None
[2025-10-12 19:29:27]  is_tar=False
[2025-10-12 19:29:27]  lfn=log.46676269._072957.job.log.tgz.1
[2025-10-12 19:29:27]  mtime=0
[2025-10-12 19:29:27]  protocol_id=None
[2025-10-12 19:29:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 19:29:27]  replicas=None
[2025-10-12 19:29:27]  scope=mc23_13p6TeV
[2025-10-12 19:29:27]  status=None
[2025-10-12 19:29:27]  status_code=0
[2025-10-12 19:29:27]  storage_token=
[2025-10-12 19:29:27]  surl=/tmp/job_10517464/atlas/pilot/slots/0/PanDA_Pilot-6839591855/log.46676269._072957.job.log.tgz.1
[2025-10-12 19:29:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/02/log.46676269._072957.job.log.tgz.1
[2025-10-12 19:29:27]  workdir=None
[2025-10-12 19:29:27] ]
[2025-10-12 19:29:27] 2025-10-12 17:28:51,747 | INFO     | transferring file log.46676269._072957.job.log.tgz.1 from /tmp/job_10517464/atlas/pilot/slots/0/PanDA_Pilot-6839591855/log.46676269._072957.job.log.tgz.1 to /tmp/j
[2025-10-12 19:29:27] 2025-10-12 17:28:51,747 | INFO     | executing command: /usr/bin/env mv /tmp/job_10517464/atlas/pilot/slots/0/PanDA_Pilot-6839591855/log.46676269._072957.job.log.tgz.1 /tmp/job_10517464/atlas/pilot/sl
[2025-10-12 19:29:27] 2025-10-12 17:28:51,755 | INFO     | adding to output.list: log.46676269._072957.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fb/02/log.46676269._072957.job.log.tg
[2025-10-12 19:29:27] 2025-10-12 17:28:51,755 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 19:29:27] 2025-10-12 17:28:51,755 | INFO     | summary of transferred files:
[2025-10-12 19:29:27] 2025-10-12 17:28:51,755 | INFO     |  -- lfn=log.46676269._072957.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 19:29:27] 2025-10-12 17:28:51,755 | INFO     | stage-out finished correctly
[2025-10-12 19:29:27] 2025-10-12 17:28:51,807 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 19:29:27] 2025-10-12 17:28:52,456 | INFO     | time since job start (3172s) is within the limit (172800.0s)
[2025-10-12 19:29:27] 2025-10-12 17:28:53,977 | INFO     | monitor loop #236: job 0:6839591855 is in state 'finished'
[2025-10-12 19:29:27] 2025-10-12 17:28:53,977 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 19:29:27] 2025-10-12 17:28:54,175 | INFO     | job 6839591855 has state=finished
[2025-10-12 19:29:27] 2025-10-12 17:28:54,175 | INFO     | preparing for final server update for job 6839591855 in state='finished'
[2025-10-12 19:29:27] 2025-10-12 17:28:54,175 | INFO     | this job has now completed (state=finished)
[2025-10-12 19:29:27] 2025-10-12 17:28:54,175 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 19:29:27] 2025-10-12 17:28:54,175 | INFO     | log transfer has been attempted: DONE
[2025-10-12 19:29:27] 2025-10-12 17:28:54,175 | INFO     | job 6839591855 has finished - writing final server update
[2025-10-12 19:29:27] 2025-10-12 17:28:54,175 | INFO     | total number of processed events: 400 (read)
[2025-10-12 19:29:27] 2025-10-12 17:28:54,176 | INFO     | executing command: lscpu
[2025-10-12 19:29:27] 2025-10-12 17:28:54,206 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 19:29:27] 2025-10-12 17:28:54,462 | INFO     | time since job start (3174s) is within the limit (172800.0s)
[2025-10-12 19:29:27] 2025-10-12 17:28:55,867 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 19:29:27] 2025-10-12 17:28:55,871 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2364.967296875
[2025-10-12 19:29:27] 2025-10-12 17:28:55,877 | INFO     | using path: /tmp/job_10517464/atlas/pilot/slots/0/PanDA_Pilot-6839591855/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 19:29:27] 2025-10-12 17:28:55,877 | INFO     | extracted standard info from prmon json
[2025-10-12 19:29:27] 2025-10-12 17:28:55,877 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 19:29:27] 2025-10-12 17:28:55,877 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 19:29:27] 2025-10-12 17:28:55,877 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 19:29:27] 2025-10-12 17:28:55,877 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 19:29:27] 2025-10-12 17:28:55,878 | INFO     | fitting pss+swap vs Time
[2025-10-12 19:29:27] 2025-10-12 17:28:55,878 | INFO     | sum of square deviations: 28242390.0
[2025-10-12 19:29:27] 2025-10-12 17:28:55,878 | INFO     | sum of deviations: 1269596965.0
[2025-10-12 19:29:27] 2025-10-12 17:28:55,878 | INFO     | mean x: 1760288625.0
[2025-10-12 19:29:27] 2025-10-12 17:28:55,878 | INFO     | mean y: 2529436.222222222
[2025-10-12 19:29:27] 2025-10-12 17:28:55,878 | INFO     | -- intersect: -79128772688.84662
[2025-10-12 19:29:27] 2025-10-12 17:28:55,878 | INFO     | intersect: -79128772688.84662
[2025-10-12 19:29:27] 2025-10-12 17:28:55,878 | INFO     | chi2: 0.07663885320830573
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | -- intersect: -79128772688.84662
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | current memory leak: 44.95 B/s (using 45 data points, chi2=0.08)
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | could have reported an average CPU frequency of 2584 MHz (5 samples)
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | ..............................
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | . Timing measurements:
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | . get job = 0 s
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | . initial setup = 1 s
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | . payload setup = 2 s
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | . stage-in = 0 s
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | . payload execution = 3152 s
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | . stage-out = 0 s
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | . log creation = 0 s
[2025-10-12 19:29:27] 2025-10-12 17:28:55,879 | INFO     | ..............................
[2025-10-12 19:29:27] 2025-10-12 17:28:55,980 | INFO     | 
[2025-10-12 19:29:27] 2025-10-12 17:28:55,980 | INFO     | job summary report
[2025-10-12 19:29:27] 2025-10-12 17:28:55,980 | INFO     | --------------------------------------------------
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | PanDA job id: 6839591855
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | task id: 46676269
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | errors: (none)
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | pilot state: finished 
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | transexitcode: 0
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | exeerrorcode: 0
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | exeerrordiag: 
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | exitcode: 0
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | exitmsg: OK
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | cpuconsumptiontime: 21214 s
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | nevents: 400
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | neventsw: 0
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | pid: 22939
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | pgrp: 22939
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | corecount: 8
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | event service: False
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | sizes: {0: 2348983, 1: 2348983, 3: 2349273, 11: 2349301, 3158: 2383934, 3163: 2384104}
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | --------------------------------------------------
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | 
[2025-10-12 19:29:27] 2025-10-12 17:28:55,981 | INFO     | executing command: ls -lF /tmp/job_10517464/atlas/pilot/slots/0
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,990 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 19:29:27] 2025-10-12 17:28:55,991 | INFO     | job 6839591855 has completed (purged errors)
[2025-10-12 19:29:27] 2025-10-12 17:28:55,991 | INFO     | overall cleanup function is called
[2025-10-12 19:29:27] 2025-10-12 17:28:56,997 | INFO     | --- collectZombieJob: --- 10, [22939]
[2025-10-12 19:29:27] 2025-10-12 17:28:56,997 | INFO     | zombie collector waiting for pid 22939
[2025-10-12 19:29:27] 2025-10-12 17:28:56,997 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 19:29:27] 2025-10-12 17:28:56,997 | INFO     | collected zombie processes
[2025-10-12 19:29:27] 2025-10-12 17:28:56,997 | INFO     | will attempt to kill all subprocesses of pid=22939
[2025-10-12 19:29:27] 2025-10-12 17:28:57,091 | INFO     | process IDs to be killed: [22939] (in reverse order)
[2025-10-12 19:29:27] 2025-10-12 17:28:57,123 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 19:29:27] 2025-10-12 17:28:57,124 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 19:29:27] 2025-10-12 17:28:57,127 | INFO     | did not find any defunct processes belonging to 22939
[2025-10-12 19:29:27] 2025-10-12 17:28:57,130 | INFO     | did not find any defunct processes belonging to 22939
[2025-10-12 19:29:27] 2025-10-12 17:28:57,130 | INFO     | ready for new job
[2025-10-12 19:29:27] 2025-10-12 17:28:57,130 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 19:29:27] 2025-10-12 17:28:57,130 | INFO     | ***************************************
[2025-10-12 19:29:27] 2025-10-12 17:28:57,130 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 19:29:27] 2025-10-12 17:28:57,130 | INFO     | ***************************************
[2025-10-12 19:29:27] 2025-10-12 17:28:57,130 | INFO     | 
[2025-10-12 19:29:27] 2025-10-12 17:28:57,144 | INFO     | architecture information:
[2025-10-12 19:29:27] 2025-10-12 17:28:57,144 | INFO     | executing command: cat /etc/os-release
[2025-10-12 19:29:27] 2025-10-12 17:28:57,150 | INFO     | cat /etc/os-release:
[2025-10-12 19:29:27] NAME="CentOS Linux"
[2025-10-12 19:29:27] VERSION="7 (Core)"
[2025-10-12 19:29:27] ID="centos"
[2025-10-12 19:29:27] ID_LIKE="rhel fedora"
[2025-10-12 19:29:27] VERSION_ID="7"
[2025-10-12 19:29:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 19:29:27] ANSI_COLOR="0;31"
[2025-10-12 19:29:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 19:29:27] HOME_URL="https://www.centos.org/"
[2025-10-12 19:29:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 19:29:27] 
[2025-10-12 19:29:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 19:29:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 19:29:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 19:29:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 19:29:27] 
[2025-10-12 19:29:27] 2025-10-12 17:28:57,150 | INFO     | ***************************************
[2025-10-12 19:29:27] 2025-10-12 17:28:57,653 | INFO     | executing command: df -mP /tmp/job_10517464/atlas/pilot/slots/0
[2025-10-12 19:29:27] 2025-10-12 17:28:57,658 | INFO     | sufficient remaining disk space (227679404032 B)
[2025-10-12 19:29:27] 2025-10-12 17:28:57,658 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 19:29:27] 2025-10-12 17:28:57,658 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 19:29:27] 2025-10-12 17:28:57,658 | INFO     | update_server=False
[2025-10-12 19:29:27] 2025-10-12 17:28:57,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 19:29:27] 2025-10-12 17:28:57,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:29:27] 2025-10-12 17:28:57,658 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 19:29:27] 2025-10-12 17:28:57,658 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 19:29:27] 2025-10-12 17:28:57,659 | INFO     | aborting loop
[2025-10-12 19:29:27] 2025-10-12 17:28:57,664 | INFO     | all payload control threads have been joined
[2025-10-12 19:29:27] 2025-10-12 17:28:57,859 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 19:29:27] 2025-10-12 17:28:58,523 | INFO     | all job control threads have been joined
[2025-10-12 19:29:27] 2025-10-12 17:28:58,663 | INFO     | [job] retrieve thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:58,664 | INFO     | [job] queue monitor thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:58,664 | INFO     | [job] job monitor thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:58,669 | INFO     | [payload] control thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:58,704 | INFO     | all data control threads have been joined
[2025-10-12 19:29:27] 2025-10-12 17:28:58,708 | INFO     | [job] validate thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:59,037 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:59,468 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:59,528 | INFO     | [job] control thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:59,547 | INFO     | [data] copytool_in thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:59,664 | INFO     | [data] copytool_out thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:59,710 | INFO     | [data] control thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:28:59,782 | INFO     | [payload] failed_post thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:29:00,115 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:29:00,241 | INFO     | [payload] validate_post thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:29:01,864 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:29:05,033 | INFO     | [monitor] cgroup control has ended
[2025-10-12 19:29:27] 2025-10-12 17:29:08,232 | INFO     | job.realtimelogging is not enabled
[2025-10-12 19:29:27] 2025-10-12 17:29:09,237 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 19:29:27] 2025-10-12 17:29:09,341 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456064669440)>']
[2025-10-12 19:29:27] 2025-10-12 17:29:14,366 | INFO     | all workflow threads have been joined
[2025-10-12 19:29:27] 2025-10-12 17:29:14,366 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 19:29:27] 2025-10-12 17:29:14,366 | INFO     | traces error code: 0
[2025-10-12 19:29:27] 2025-10-12 17:29:14,366 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 19:29:27] 2025-10-12 17:29:27,641 | INFO     | PID=11430 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 19:29:27] 2025-10-12 17:29:27,641 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 19:29:27] 2025-10-12 17:29:27,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 19:29:27] 2025-10-12 17:29:27,642 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 19:29:27] 2025-10-12 17:29:27,642 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 19:29:27] 2025-10-12 17:29:27,642 | INFO     | [monitor] control thread has ended
[2025-10-12 19:29:27] 2025-10-12 17:29:27,692 [wrapper] ==== pilot stdout END ====
[2025-10-12 19:29:27] 2025-10-12 17:29:27,694 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 19:29:27] 2025-10-12 17:29:27,695 [wrapper] pilotpid: 11430
[2025-10-12 19:29:27] 2025-10-12 17:29:27,697 [wrapper] Pilot exit status: 0
[2025-10-12 19:29:27] 2025-10-12 17:29:27,700 [wrapper] pandaids: 6839591855
[2025-10-12 19:29:27] 2025-10-12 17:29:27,720 [wrapper] cleanup supervisor_pilot 10084 11431
[2025-10-12 19:29:27] 2025-10-12 17:29:27,721 [wrapper] Test setup, not cleaning
[2025-10-12 19:29:27] 2025-10-12 17:29:27,722 [wrapper] apfmon messages muted
[2025-10-12 19:29:27] 2025-10-12 17:29:27,723 [wrapper] ==== wrapper stdout END ====
[2025-10-12 19:29:27] 2025-10-12 17:29:27,724 [wrapper] ==== wrapper stderr END ====
[2025-10-12 19:29:27]  *** Error codes and diagnostics ***
[2025-10-12 19:29:27]     "exeErrorCode": 0,
[2025-10-12 19:29:27]     "exeErrorDiag": "",
[2025-10-12 19:29:27]     "pilotErrorCode": 0,
[2025-10-12 19:29:27]     "pilotErrorDiag": "",
[2025-10-12 19:29:27]  *** Listing of results directory ***
[2025-10-12 19:29:27] total 411508
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user    557409 Oct 12 08:44 pilot3.tar.gz
[2025-10-12 19:29:27] -rwx------ 1 mf493845 unix-user     36292 Oct 12 08:45 runpilot2-wrapper.sh
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user      5112 Oct 12 08:45 queuedata.json
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user       100 Oct 12 17:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 19:29:27] -rwxr-xr-x 1 mf493845 unix-user      7986 Oct 12 17:39 run_atlas
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user       105 Oct 12 17:39 job.xml
[2025-10-12 19:29:27] -rw-r--r-- 2 mf493845 unix-user 219963052 Oct 12 18:35 EVNT.46676267._004521.pool.root.1
[2025-10-12 19:29:27] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 18:35 start_atlas.sh
[2025-10-12 19:29:27] drwxrwx--x 2 mf493845 unix-user       100 Oct 12 18:35 shared
[2025-10-12 19:29:27] -rw-r--r-- 2 mf493845 unix-user    569677 Oct 12 18:35 input.tar.gz
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user      6394 Oct 12 18:35 init_data.xml
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user         0 Oct 12 18:35 boinc_setup_complete
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user      8192 Oct 12 18:35 boinc_mmap_file
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user         0 Oct 12 18:35 boinc_lockfile
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user      2550 Oct 12 18:35 pandaJob.out
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user    975528 Oct 12 18:35 agis_schedconf.cvmfs.json
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user   1560580 Oct 12 18:35 agis_ddmendpoints.agis.ALL.json
[2025-10-12 19:29:27] drwx------ 5 mf493845 unix-user       440 Oct 12 18:36 pilot3
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user 195946772 Oct 12 19:28 HITS.46676269._072957.pool.root.1
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user        95 Oct 12 19:28 pilot_heartbeat.json
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user      1016 Oct 12 19:28 memory_monitor_summary.json
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user    305486 Oct 12 19:28 log.46676269._072957.job.log.tgz.1
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user      7770 Oct 12 19:28 heartbeat.json
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user       745 Oct 12 19:29 pilotlog.txt
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user    499494 Oct 12 19:29 log.46676269._072957.job.log.1
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user       357 Oct 12 19:29 output.list
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user       620 Oct 12 19:29 runtime_log
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user    819200 Oct 12 19:29 result.tar.gz
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user      9076 Oct 12 19:29 runtime_log.err
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user       642 Oct 12 19:29 aAsLDmx04R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2uiNDmj5ZMSo.diag
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user     21895 Oct 12 19:29 stderr.txt
[2025-10-12 19:29:27] HITS file was successfully produced:
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user 195946772 Oct 12 19:28 shared/HITS.pool.root.1
[2025-10-12 19:29:27]  *** Contents of shared directory: ***
[2025-10-12 19:29:27] total 407540
[2025-10-12 19:29:27] -rw-r--r-- 2 mf493845 unix-user 219963052 Oct 12 18:35 ATLAS.root_0
[2025-10-12 19:29:27] -rw-r--r-- 2 mf493845 unix-user     15120 Oct 12 18:35 start_atlas.sh
[2025-10-12 19:29:27] -rw-r--r-- 2 mf493845 unix-user    569677 Oct 12 18:35 input.tar.gz
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user 195946772 Oct 12 19:28 HITS.pool.root.1
[2025-10-12 19:29:27] -rw------- 1 mf493845 unix-user    819200 Oct 12 19:29 result.tar.gz
19:29:29 (4544): run_atlas exited; CPU time 21265.041502
19:29:29 (4544): called boinc_finish(0)

</stderr_txt>
]]>

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