Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:58:25 (2723574): wrapper (7.7.26015): starting
10:58:25 (2723574): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:58:25] Arguments: --nthreads 8
[2025-10-12 10:58:25] Threads: 8
[2025-10-12 10:58:25] Checking for CVMFS
[2025-10-12 10:58:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:58:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:58:25] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:58:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:58:27] 2.13.2.0 3695926 129411 261316 151623 2 410 31101695 32935937 26732 16776704 0 215277847 99.569 250623365 29091 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 10:58:27] CVMFS is ok
[2025-10-12 10:58:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:58:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:58:27] Further information can be found at the LHC@home message board.
[2025-10-12 10:58:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:58:27] Checking for apptainer binary...
[2025-10-12 10:58:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:58:27] Running /usr/bin/apptainer --version
[2025-10-12 10:58:27] apptainer version 1.4.3-1.el9
[2025-10-12 10:58:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:58:28] c6-4-5-3.aglt2.org
[2025-10-12 10:58:28] apptainer works
[2025-10-12 10:58:28] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:58:28] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:58:28] Starting ATLAS job with PandaID=6839820678
[2025-10-12 10:58:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:31:11 (2880496): wrapper (7.7.26015): starting
11:31:11 (2880496): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:31:11] Arguments: --nthreads 8
[2025-10-12 11:31:11] Threads: 8
[2025-10-12 11:31:11] This job has been restarted, cleaning up previous attempt
[2025-10-12 11:31:11] Checking for CVMFS
[2025-10-12 11:31:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:31:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:31:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:31:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:31:12] 2.13.2.0 3695926 129444 250680 151625 1 72 31123948 32935936 26327 16776704 0 215528458 99.570 250625747 29091 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 11:31:12] CVMFS is ok
[2025-10-12 11:31:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:31:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:31:12] Further information can be found at the LHC@home message board.
[2025-10-12 11:31:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:31:12] Checking for apptainer binary...
[2025-10-12 11:31:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:31:12] Running /usr/bin/apptainer --version
[2025-10-12 11:31:13] apptainer version 1.4.3-1.el9
[2025-10-12 11:31:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:31:13] c6-4-5-3.aglt2.org
[2025-10-12 11:31:13] apptainer works
[2025-10-12 11:31:13] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:31:13] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:31:13] Starting ATLAS job with PandaID=6839820678
[2025-10-12 11:31:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 18:15:24]  *** The last 200 lines of the pilot log: ***
[2025-10-12 18:15:24] 2025-10-12 22:14:34,722 | INFO     | monitor loop #1521: job 0:6839820678 is in state 'finished'
[2025-10-12 18:15:24] 2025-10-12 22:14:34,722 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 18:15:24] 2025-10-12 22:14:34,967 | INFO     | time since job start (24180s) is within the limit (172800.0s)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,125 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 18:15:24] 2025-10-12 22:14:36,129 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2932.7970000000005
[2025-10-12 18:15:24] 2025-10-12 22:14:36,139 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839820678/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,140 | INFO     | extracted standard info from prmon json
[2025-10-12 18:15:24] 2025-10-12 22:14:36,140 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 18:15:24] 2025-10-12 22:14:36,140 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 18:15:24] 2025-10-12 22:14:36,141 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 18:15:24] 2025-10-12 22:14:36,141 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 18:15:24] 2025-10-12 22:14:36,147 | INFO     | fitting pss+swap vs Time
[2025-10-12 18:15:24] 2025-10-12 22:14:36,148 | INFO     | sum of square deviations: 19255230410.97722
[2025-10-12 18:15:24] 2025-10-12 22:14:36,151 | INFO     | sum of deviations: 62465436356.81062
[2025-10-12 18:15:24] 2025-10-12 22:14:36,152 | INFO     | mean x: 1760295208.6742425
[2025-10-12 18:15:24] 2025-10-12 22:14:36,152 | INFO     | mean y: 2116521.618686869
[2025-10-12 18:15:24] 2025-10-12 22:14:36,152 | INFO     | -- intersect: -5708415421.117964
[2025-10-12 18:15:24] 2025-10-12 22:14:36,152 | INFO     | intersect: -5708415421.117964
[2025-10-12 18:15:24] 2025-10-12 22:14:36,152 | INFO     | chi2: 2.9060224250712157
[2025-10-12 18:15:24] 2025-10-12 22:14:36,153 | INFO     | sum of square deviations: 18535033300.823578
[2025-10-12 18:15:24] 2025-10-12 22:14:36,156 | INFO     | sum of deviations: 81093699647.23528
[2025-10-12 18:15:24] 2025-10-12 22:14:36,157 | INFO     | mean x: 1760295056.1764705
[2025-10-12 18:15:24] 2025-10-12 22:14:36,157 | INFO     | mean y: 2120419.503836317
[2025-10-12 18:15:24] 2025-10-12 22:14:36,157 | INFO     | -- intersect: -7699448617.857698
[2025-10-12 18:15:24] 2025-10-12 22:14:36,157 | INFO     | intersect: -7699448617.857698
[2025-10-12 18:15:24] 2025-10-12 22:14:36,157 | INFO     | chi2: 2.2633080209822802
[2025-10-12 18:15:24] 2025-10-12 22:14:36,157 | INFO     | current chi2=2.2633080209822802 (change=22.116636077685634 %)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,157 | INFO     | right removable region: 390
[2025-10-12 18:15:24] 2025-10-12 22:14:36,158 | INFO     | sum of square deviations: 18534991210.82358
[2025-10-12 18:15:24] 2025-10-12 22:14:36,161 | INFO     | sum of deviations: -3168349191.9411926
[2025-10-12 18:15:24] 2025-10-12 22:14:36,161 | INFO     | mean x: 1760295361.1764705
[2025-10-12 18:15:24] 2025-10-12 22:14:36,161 | INFO     | mean y: 2130371.2890025578
[2025-10-12 18:15:24] 2025-10-12 22:14:36,162 | INFO     | -- intersect: 303033151.4265218
[2025-10-12 18:15:24] 2025-10-12 22:14:36,162 | INFO     | intersect: 303033151.4265218
[2025-10-12 18:15:24] 2025-10-12 22:14:36,162 | INFO     | chi2: 1.1946755247980416
[2025-10-12 18:15:24] 2025-10-12 22:14:36,162 | INFO     | current chi2=1.1946755247980416 (change=58.889666009072016 %)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,163 | INFO     | sum of square deviations: 17832985976.870518
[2025-10-12 18:15:24] 2025-10-12 22:14:36,166 | INFO     | sum of deviations: -24398430132.01554
[2025-10-12 18:15:24] 2025-10-12 22:14:36,166 | INFO     | mean x: 1760295513.6735752
[2025-10-12 18:15:24] 2025-10-12 22:14:36,166 | INFO     | mean y: 2134983.8808290157
[2025-10-12 18:15:24] 2025-10-12 22:14:36,166 | INFO     | -- intersect: 2410506030.533897
[2025-10-12 18:15:24] 2025-10-12 22:14:36,166 | INFO     | intersect: 2410506030.533897
[2025-10-12 18:15:24] 2025-10-12 22:14:36,166 | INFO     | chi2: 1.0470295216937884
[2025-10-12 18:15:24] 2025-10-12 22:14:36,167 | INFO     | current chi2=1.0470295216937884 (change=12.358669784351079 %)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,167 | INFO     | left removable region: 20
[2025-10-12 18:15:24] 2025-10-12 22:14:36,167 | INFO     | sum of square deviations: 15706018089.081055
[2025-10-12 18:15:24] 2025-10-12 22:14:36,170 | INFO     | sum of deviations: -27020091032.054024
[2025-10-12 18:15:24] 2025-10-12 22:14:36,170 | INFO     | mean x: 1760295635.6756756
[2025-10-12 18:15:24] 2025-10-12 22:14:36,170 | INFO     | mean y: 2143878.6162162162
[2025-10-12 18:15:24] 2025-10-12 22:14:36,170 | INFO     | -- intersect: 3030495689.3371377
[2025-10-12 18:15:24] 2025-10-12 22:14:36,170 | INFO     | intersect: 3030495689.3371377
[2025-10-12 18:15:24] 2025-10-12 22:14:36,171 | INFO     | chi2: 0.23584210602007039
[2025-10-12 18:15:24] 2025-10-12 22:14:36,171 | INFO     | -- intersect: 3030495689.3371377
[2025-10-12 18:15:24] 2025-10-12 22:14:36,171 | INFO     | current memory leak: -1.72 B/s (using 370 data points, chi2=0.24)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,172 | INFO     | could have reported an average CPU frequency of 2868 MHz (17 samples)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,172 | INFO     | ..............................
[2025-10-12 18:15:24] 2025-10-12 22:14:36,172 | INFO     | . Timing measurements:
[2025-10-12 18:15:24] 2025-10-12 22:14:36,172 | INFO     | . get job = 0 s
[2025-10-12 18:15:24] 2025-10-12 22:14:36,172 | INFO     | . initial setup = 2 s
[2025-10-12 18:15:24] 2025-10-12 22:14:36,172 | INFO     | . payload setup = 19 s
[2025-10-12 18:15:24] 2025-10-12 22:14:36,173 | INFO     | . stage-in = 0 s
[2025-10-12 18:15:24] 2025-10-12 22:14:36,173 | INFO     | . payload execution = 24116 s
[2025-10-12 18:15:24] 2025-10-12 22:14:36,173 | INFO     | . stage-out = 3 s
[2025-10-12 18:15:24] 2025-10-12 22:14:36,173 | INFO     | . log creation = 0 s
[2025-10-12 18:15:24] 2025-10-12 22:14:36,173 | INFO     | ..............................
[2025-10-12 18:15:24] 2025-10-12 22:14:36,255 | INFO     | 
[2025-10-12 18:15:24] 2025-10-12 22:14:36,256 | INFO     | job summary report
[2025-10-12 18:15:24] 2025-10-12 22:14:36,256 | INFO     | --------------------------------------------------
[2025-10-12 18:15:24] 2025-10-12 22:14:36,256 | INFO     | PanDA job id: 6839820678
[2025-10-12 18:15:24] 2025-10-12 22:14:36,256 | INFO     | task id: 46676269
[2025-10-12 18:15:24] 2025-10-12 22:14:36,256 | INFO     | errors: (none)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,256 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | pilot state: finished 
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | transexitcode: 0
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | exeerrorcode: 0
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | exeerrordiag: 
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | exitcode: 0
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | exitmsg: OK
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | cpuconsumptiontime: 42761 s
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | nevents: 400
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | neventsw: 0
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | pid: 2914406
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | pgrp: 2914406
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | corecount: 8
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | event service: False
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | sizes: {0: 2348578, 1: 2348662, 2: 2348861, 13: 2349179, 24140: 2384452, 24145: 2393634, 24156: 2393836}
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | --------------------------------------------------
[2025-10-12 18:15:24] 2025-10-12 22:14:36,257 | INFO     | 
[2025-10-12 18:15:24] 2025-10-12 22:14:36,258 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 18:15:24] 2025-10-12 22:14:36,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,311 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,311 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,311 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,311 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,311 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,312 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 18:15:24] 2025-10-12 22:14:36,313 | INFO     | job 6839820678 has completed (purged errors)
[2025-10-12 18:15:24] 2025-10-12 22:14:36,313 | INFO     | overall cleanup function is called
[2025-10-12 18:15:24] 2025-10-12 22:14:37,322 | INFO     | --- collectZombieJob: --- 10, [2914406]
[2025-10-12 18:15:24] 2025-10-12 22:14:37,322 | INFO     | zombie collector waiting for pid 2914406
[2025-10-12 18:15:24] 2025-10-12 22:14:37,322 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 18:15:24] 2025-10-12 22:14:37,322 | INFO     | collected zombie processes
[2025-10-12 18:15:24] 2025-10-12 22:14:37,322 | INFO     | will attempt to kill all subprocesses of pid=2914406
[2025-10-12 18:15:24] 2025-10-12 22:14:37,754 | INFO     | process IDs to be killed: [2914406] (in reverse order)
[2025-10-12 18:15:24] 2025-10-12 22:14:37,948 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 18:15:24] 2025-10-12 22:14:37,948 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 18:15:24] 2025-10-12 22:14:38,005 | INFO     | did not find any defunct processes belonging to 2914406
[2025-10-12 18:15:24] 2025-10-12 22:14:38,020 | INFO     | did not find any defunct processes belonging to 2914406
[2025-10-12 18:15:24] 2025-10-12 22:14:38,021 | INFO     | ready for new job
[2025-10-12 18:15:24] 2025-10-12 22:14:38,021 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 18:15:24] 2025-10-12 22:14:38,028 | INFO     | ***************************************
[2025-10-12 18:15:24] 2025-10-12 22:14:38,028 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 18:15:24] 2025-10-12 22:14:38,028 | INFO     | ***************************************
[2025-10-12 18:15:24] 2025-10-12 22:14:38,028 | INFO     | 
[2025-10-12 18:15:24] 2025-10-12 22:14:38,062 | INFO     | architecture information:
[2025-10-12 18:15:24] 2025-10-12 22:14:38,093 | INFO     | executing command: cat /etc/os-release
[2025-10-12 18:15:24] 2025-10-12 22:14:38,246 | INFO     | cat /etc/os-release:
[2025-10-12 18:15:24] NAME="CentOS Linux"
[2025-10-12 18:15:24] VERSION="7 (Core)"
[2025-10-12 18:15:24] ID="centos"
[2025-10-12 18:15:24] ID_LIKE="rhel fedora"
[2025-10-12 18:15:24] VERSION_ID="7"
[2025-10-12 18:15:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 18:15:24] ANSI_COLOR="0;31"
[2025-10-12 18:15:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 18:15:24] HOME_URL="https://www.centos.org/"
[2025-10-12 18:15:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 18:15:24] 
[2025-10-12 18:15:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 18:15:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 18:15:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 18:15:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 18:15:24] 
[2025-10-12 18:15:24] 2025-10-12 22:14:38,247 | INFO     | ***************************************
[2025-10-12 18:15:24] 2025-10-12 22:14:38,750 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 18:15:24] 2025-10-12 22:14:38,775 | INFO     | sufficient remaining disk space (75367448576 B)
[2025-10-12 18:15:24] 2025-10-12 22:14:38,775 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 18:15:24] 2025-10-12 22:14:38,776 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 18:15:24] 2025-10-12 22:14:38,776 | INFO     | update_server=False
[2025-10-12 18:15:24] 2025-10-12 22:14:38,776 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 18:15:24] 2025-10-12 22:14:38,776 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:15:24] 2025-10-12 22:14:38,777 | INFO     | aborting loop
[2025-10-12 18:15:24] 2025-10-12 22:14:38,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 18:15:24] 2025-10-12 22:14:39,629 | INFO     | all job control threads have been joined
[2025-10-12 18:15:24] 2025-10-12 22:14:39,782 | INFO     | [job] retrieve thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:39,783 | INFO     | [job] job monitor thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:39,792 | INFO     | [data] copytool_in thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:39,797 | INFO     | all data control threads have been joined
[2025-10-12 18:15:24] 2025-10-12 22:14:39,798 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:39,896 | INFO     | [payload] validate_post thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:40,038 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:40,271 | INFO     | all payload control threads have been joined
[2025-10-12 18:15:24] 2025-10-12 22:14:40,276 | INFO     | [payload] failed_post thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:40,503 | INFO     | [job] validate thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:40,529 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:40,565 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:40,635 | INFO     | [job] control thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:40,785 | INFO     | [data] copytool_out thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:40,803 | INFO     | [data] control thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:40,805 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 18:15:24] 2025-10-12 22:14:41,283 | INFO     | [payload] control thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:41,318 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 18:15:24] 2025-10-12 22:14:42,327 | INFO     | [job] queue monitor thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:14:44,834 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 18:15:24] 2025-10-12 22:15:08,579 | INFO     | PID=2891217 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 18:15:24] 2025-10-12 22:15:08,579 | INFO     | .. there are 31 such processes running
[2025-10-12 18:15:24] 2025-10-12 22:15:08,580 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 18:15:24] 2025-10-12 22:15:08,580 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 18:15:24] 2025-10-12 22:15:08,580 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 18:15:24] 2025-10-12 22:15:16,385 | INFO     | [monitor] cgroup control has ended
[2025-10-12 18:15:24] 2025-10-12 22:15:18,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139875371882304)>', '<ExcThread(monitor, started 139875021985536)>']
[2025-10-12 18:15:24] 2025-10-12 22:15:18,636 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 18:15:24] 2025-10-12 22:15:18,636 | INFO     | [monitor] control thread has ended
[2025-10-12 18:15:24] 2025-10-12 22:15:23,347 | INFO     | all workflow threads have been joined
[2025-10-12 18:15:24] 2025-10-12 22:15:23,347 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 18:15:24] 2025-10-12 22:15:23,347 | INFO     | traces error code: 0
[2025-10-12 18:15:24] 2025-10-12 22:15:23,347 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 18:15:24] 2025-10-12 22:15:23,832 [wrapper] ==== pilot stdout END ====
[2025-10-12 18:15:24] 2025-10-12 22:15:23,843 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 18:15:24] 2025-10-12 22:15:23,849 [wrapper] pilotpid: 2891217
[2025-10-12 18:15:24] 2025-10-12 22:15:23,852 [wrapper] Pilot exit status: 0
[2025-10-12 18:15:24] 2025-10-12 22:15:23,886 [wrapper] pandaids: 6839820678 6839820678
[2025-10-12 18:15:24] 2025-10-12 22:15:23,957 [wrapper] cleanup supervisor_pilot  160914 2891218
[2025-10-12 18:15:24] 2025-10-12 22:15:23,960 [wrapper] Test setup, not cleaning
[2025-10-12 18:15:24] 2025-10-12 22:15:23,962 [wrapper] apfmon messages muted
[2025-10-12 18:15:24] 2025-10-12 22:15:23,964 [wrapper] ==== wrapper stdout END ====
[2025-10-12 18:15:24] 2025-10-12 22:15:23,966 [wrapper] ==== wrapper stderr END ====
[2025-10-12 18:15:24]  *** Error codes and diagnostics ***
[2025-10-12 18:15:24]     "exeErrorCode": 0,
[2025-10-12 18:15:24]     "exeErrorDiag": "",
[2025-10-12 18:15:24]     "pilotErrorCode": 0,
[2025-10-12 18:15:24]     "pilotErrorDiag": "",
[2025-10-12 18:15:24]  *** Listing of results directory ***
[2025-10-12 18:15:24] total 630432
[2025-10-12 18:15:24] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 04:37 pilot3.tar.gz
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 04:46 queuedata.json
[2025-10-12 18:15:24] -rwx------. 1 boincer umatlas     36292 Oct 12 04:47 runpilot2-wrapper.sh
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas       100 Oct 12 10:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 18:15:24] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 10:58 run_atlas
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas       105 Oct 12 10:58 job.xml
[2025-10-12 18:15:24] -rw-r--r--. 3 boincer umatlas 221852283 Oct 12 10:58 EVNT.46676267._000918.pool.root.1
[2025-10-12 18:15:24] -rw-r--r--. 3 boincer umatlas 221852283 Oct 12 10:58 ATLAS.root_0
[2025-10-12 18:15:24] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 10:58 start_atlas.sh
[2025-10-12 18:15:24] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 10:58 shared
[2025-10-12 18:15:24] -rw-r--r--. 2 boincer umatlas    569688 Oct 12 10:58 input.tar.gz
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas         0 Oct 12 10:58 boinc_lockfile
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 11:31 pandaJob.out
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas    975528 Oct 12 11:31 agis_schedconf.cvmfs.json
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas      6856 Oct 12 18:10 init_data.xml
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas 190522893 Oct 12 18:13 HITS.46676269._074744.pool.root.1
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas       531 Oct 12 18:13 boinc_task_state.xml
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas        96 Oct 12 18:14 pilot_heartbeat.json
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas      1052 Oct 12 18:14 memory_monitor_summary.json
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas   1560580 Oct 12 18:14 agis_ddmendpoints.agis.ALL.json
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas    603009 Oct 12 18:14 log.46676269._074744.job.log.tgz.1
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas      7844 Oct 12 18:14 heartbeat.json
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 18:15 boinc_mmap_file
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas        28 Oct 12 18:15 wrapper_checkpoint.txt
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas      4824 Oct 12 18:15 pilotlog.txt
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas   3107622 Oct 12 18:15 log.46676269._074744.job.log.1
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas       357 Oct 12 18:15 output.list
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas       620 Oct 12 18:15 runtime_log
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas   3727360 Oct 12 18:15 result.tar.gz
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas      8789 Oct 12 18:15 runtime_log.err
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas       785 Oct 12 18:15 eGtMDmKv6R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmlXTMDmAseoBo.diag
[2025-10-12 18:15:24] -rw-r--r--. 1 boincer umatlas     23372 Oct 12 18:15 stderr.txt
[2025-10-12 18:15:24] HITS file was successfully produced:
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas 190522893 Oct 12 18:13 shared/HITS.pool.root.1
[2025-10-12 18:15:24]  *** Contents of shared directory: ***
[2025-10-12 18:15:24] total 406940
[2025-10-12 18:15:24] -rw-r--r--. 3 boincer umatlas 221852283 Oct 12 10:58 ATLAS.root_0
[2025-10-12 18:15:24] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 10:58 start_atlas.sh
[2025-10-12 18:15:24] -rw-r--r--. 2 boincer umatlas    569688 Oct 12 10:58 input.tar.gz
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas 190522893 Oct 12 18:13 HITS.pool.root.1
[2025-10-12 18:15:24] -rw-------. 1 boincer umatlas   3727360 Oct 12 18:15 result.tar.gz
18:15:26 (2880496): run_atlas exited; CPU time 43595.578388
18:15:26 (2880496): called boinc_finish(0)

</stderr_txt>
]]>

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