Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:47:25 (17708): wrapper (7.7.26015): starting
20:47:25 (17708): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 20:47:25] Arguments: --nthreads 8
[2025-10-12 20:47:25] Threads: 8
[2025-10-12 20:47:25] Checking for CVMFS
[2025-10-12 20:47:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:47:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:47:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:47:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:47:27] 2.11.2.0 22738 220802 136952 151633 0 60 13144785 25165825 4632 130560 0 119890825 99.882 65438002 3165 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-12 20:47:27] CVMFS is ok
[2025-10-12 20:47:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:47:27] Checking for apptainer binary...
[2025-10-12 20:47:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:47:27] Running /usr/bin/apptainer --version
[2025-10-12 20:47:27] apptainer version 1.3.2-1.el7
[2025-10-12 20:47:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:47:45] cg-vwn395.simple-grid.lan
[2025-10-12 20:47:45] apptainer works
[2025-10-12 20:47:45] Set ATHENA_PROC_NUMBER=8
[2025-10-12 20:47:45] Set ATHENA_CORE_NUMBER=8
[2025-10-12 20:47:46] Starting ATLAS job with PandaID=6839591570
[2025-10-12 20:47:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:14:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:14:44] 2025-10-12 23:13:42,859 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 01:14:44] 2025-10-12 23:13:42,865 | INFO     | fitting pss+swap vs Time
[2025-10-13 01:14:44] 2025-10-12 23:13:42,865 | INFO     | sum of square deviations: 4787066500.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,867 | INFO     | sum of deviations: 90776434714.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,868 | INFO     | mean x: 1760303100.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,868 | INFO     | mean y: 2432548.9799196785
[2025-10-13 01:14:44] 2025-10-12 23:13:42,868 | INFO     | -- intersect: -33377935038.142967
[2025-10-13 01:14:44] 2025-10-12 23:13:42,868 | INFO     | intersect: -33377935038.142967
[2025-10-13 01:14:44] 2025-10-12 23:13:42,868 | INFO     | chi2: 5.963482642644819
[2025-10-13 01:14:44] 2025-10-12 23:13:42,869 | INFO     | sum of square deviations: 4504437945.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,871 | INFO     | sum of deviations: 105266372914.5
[2025-10-13 01:14:44] 2025-10-12 23:13:42,875 | INFO     | mean x: 1760302947.5
[2025-10-13 01:14:44] 2025-10-12 23:13:42,875 | INFO     | mean y: 2440221.5614754097
[2025-10-13 01:14:44] 2025-10-12 23:13:42,876 | INFO     | -- intersect: -41134924478.89251
[2025-10-13 01:14:44] 2025-10-12 23:13:42,876 | INFO     | intersect: -41134924478.89251
[2025-10-13 01:14:44] 2025-10-12 23:13:42,876 | INFO     | chi2: 5.222074907820078
[2025-10-13 01:14:44] 2025-10-12 23:13:42,876 | INFO     | current chi2=5.222074907820078 (change=12.432462358872986 %)
[2025-10-13 01:14:44] 2025-10-12 23:13:42,876 | INFO     | right removable region: 243
[2025-10-13 01:14:44] 2025-10-12 23:13:42,877 | INFO     | sum of square deviations: 4504437945.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,879 | INFO     | sum of deviations: 8743717064.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,879 | INFO     | mean x: 1760303252.5
[2025-10-13 01:14:44] 2025-10-12 23:13:42,879 | INFO     | mean y: 2476767.0573770492
[2025-10-13 01:14:44] 2025-10-12 23:13:42,879 | INFO     | -- intersect: -3414507499.266876
[2025-10-13 01:14:44] 2025-10-12 23:13:42,879 | INFO     | intersect: -3414507499.266876
[2025-10-13 01:14:44] 2025-10-12 23:13:42,880 | INFO     | chi2: 1.671761986576623
[2025-10-13 01:14:44] 2025-10-12 23:13:42,880 | INFO     | current chi2=1.671761986576623 (change=71.96668311530135 %)
[2025-10-13 01:14:44] 2025-10-12 23:13:42,880 | INFO     | sum of square deviations: 4233158440.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,882 | INFO     | sum of deviations: -20614262957.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,882 | INFO     | mean x: 1760303405.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,882 | INFO     | mean y: 2493139.5020920504
[2025-10-13 01:14:44] 2025-10-12 23:13:42,883 | INFO     | -- intersect: 8574663963.982848
[2025-10-13 01:14:44] 2025-10-12 23:13:42,883 | INFO     | intersect: 8574663963.982848
[2025-10-13 01:14:44] 2025-10-12 23:13:42,887 | INFO     | chi2: 0.8841127872525414
[2025-10-13 01:14:44] 2025-10-12 23:13:42,888 | INFO     | current chi2=0.8841127872525414 (change=47.11491262802324 %)
[2025-10-13 01:14:44] 2025-10-12 23:13:42,888 | INFO     | sum of square deviations: 3972995422.5
[2025-10-13 01:14:44] 2025-10-12 23:13:42,890 | INFO     | sum of deviations: -17260097802.999996
[2025-10-13 01:14:44] 2025-10-12 23:13:42,890 | INFO     | mean x: 1760303557.5
[2025-10-13 01:14:44] 2025-10-12 23:13:42,890 | INFO     | mean y: 2491141.3333333335
[2025-10-13 01:14:44] 2025-10-12 23:13:42,890 | INFO     | -- intersect: 7649872609.067412
[2025-10-13 01:14:44] 2025-10-12 23:13:42,891 | INFO     | intersect: 7649872609.067412
[2025-10-13 01:14:44] 2025-10-12 23:13:42,891 | INFO     | chi2: 0.8640966817357061
[2025-10-13 01:14:44] 2025-10-12 23:13:42,891 | INFO     | current chi2=0.8640966817357061 (change=2.263976475109824 %)
[2025-10-13 01:14:44] 2025-10-12 23:13:42,891 | INFO     | left removable region: 30
[2025-10-13 01:14:44] 2025-10-12 23:13:42,892 | INFO     | sum of square deviations: 2996454322.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,893 | INFO     | sum of deviations: 6047604538.000001
[2025-10-13 01:14:44] 2025-10-12 23:13:42,893 | INFO     | mean x: 1760303832.0
[2025-10-13 01:14:44] 2025-10-12 23:13:42,893 | INFO     | mean y: 2495741.38028169
[2025-10-13 01:14:44] 2025-10-12 23:13:42,894 | INFO     | -- intersect: -3550243696.1948957
[2025-10-13 01:14:44] 2025-10-12 23:13:42,894 | INFO     | intersect: -3550243696.1948957
[2025-10-13 01:14:44] 2025-10-12 23:13:42,894 | INFO     | chi2: 0.0009887380901732737
[2025-10-13 01:14:44] 2025-10-12 23:13:42,894 | INFO     | -- intersect: -3550243696.1948957
[2025-10-13 01:14:44] 2025-10-12 23:13:42,894 | INFO     | current memory leak: 2.02 B/s (using 213 data points, chi2=0.00)
[2025-10-13 01:14:44] 2025-10-12 23:13:42,895 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2025-10-13 01:14:44] 2025-10-12 23:13:42,895 | INFO     | ..............................
[2025-10-13 01:14:44] 2025-10-12 23:13:42,895 | INFO     | . Timing measurements:
[2025-10-13 01:14:44] 2025-10-12 23:13:42,895 | INFO     | . get job = 0 s
[2025-10-13 01:14:44] 2025-10-12 23:13:42,896 | INFO     | . initial setup = 8 s
[2025-10-13 01:14:44] 2025-10-12 23:13:42,896 | INFO     | . payload setup = 119 s
[2025-10-13 01:14:44] 2025-10-12 23:13:42,896 | INFO     | . stage-in = 0 s
[2025-10-13 01:14:44] 2025-10-12 23:13:42,896 | INFO     | . payload execution = 15352 s
[2025-10-13 01:14:44] 2025-10-12 23:13:42,896 | INFO     | . stage-out = 3 s
[2025-10-13 01:14:44] 2025-10-12 23:13:42,896 | INFO     | . log creation = 1 s
[2025-10-13 01:14:44] 2025-10-12 23:13:42,896 | INFO     | ..............................
[2025-10-13 01:14:44] 2025-10-12 23:13:43,036 | INFO     | 
[2025-10-13 01:14:44] 2025-10-12 23:13:43,037 | INFO     | job summary report
[2025-10-13 01:14:44] 2025-10-12 23:13:43,037 | INFO     | --------------------------------------------------
[2025-10-13 01:14:44] 2025-10-12 23:13:43,037 | INFO     | PanDA job id: 6839591570
[2025-10-13 01:14:44] 2025-10-12 23:13:43,037 | INFO     | task id: 46676269
[2025-10-13 01:14:44] 2025-10-12 23:13:43,037 | INFO     | errors: (none)
[2025-10-13 01:14:44] 2025-10-12 23:13:43,037 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 01:14:44] 2025-10-12 23:13:43,037 | INFO     | pilot state: finished 
[2025-10-13 01:14:44] 2025-10-12 23:13:43,037 | INFO     | transexitcode: 0
[2025-10-13 01:14:44] 2025-10-12 23:13:43,037 | INFO     | exeerrorcode: 0
[2025-10-13 01:14:44] 2025-10-12 23:13:43,038 | INFO     | exeerrordiag: 
[2025-10-13 01:14:44] 2025-10-12 23:13:43,038 | INFO     | exitcode: 0
[2025-10-13 01:14:44] 2025-10-12 23:13:43,038 | INFO     | exitmsg: OK
[2025-10-13 01:14:44] 2025-10-12 23:13:43,038 | INFO     | cpuconsumptiontime: 56001 s
[2025-10-13 01:14:44] 2025-10-12 23:13:43,038 | INFO     | nevents: 400
[2025-10-13 01:14:44] 2025-10-12 23:13:43,038 | INFO     | neventsw: 0
[2025-10-13 01:14:44] 2025-10-12 23:13:43,038 | INFO     | pid: 28058
[2025-10-13 01:14:44] 2025-10-12 23:13:43,038 | INFO     | pgrp: 28058
[2025-10-13 01:14:44] 2025-10-12 23:13:43,038 | INFO     | corecount: 8
[2025-10-13 01:14:44] 2025-10-12 23:13:43,039 | INFO     | event service: False
[2025-10-13 01:14:44] 2025-10-12 23:13:43,039 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 22: 2348913, 33: 2348941, 44: 2348997, 55: 2349153, 65: 2349181, 76: 2349209, 87: 2349265, 88: 2349555, 98: 2349863, 1
[2025-10-13 01:14:44] 2025-10-12 23:13:43,039 | INFO     | --------------------------------------------------
[2025-10-13 01:14:44] 2025-10-12 23:13:43,039 | INFO     | 
[2025-10-13 01:14:44] 2025-10-12 23:13:43,039 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2025-10-13 01:14:44] 2025-10-12 23:13:43,442 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,442 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,442 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,442 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,443 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,444 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,444 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:14:44] 2025-10-12 23:13:43,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,444 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:14:44] 2025-10-12 23:13:43,444 | INFO     | job 6839591570 has completed (purged errors)
[2025-10-13 01:14:44] 2025-10-12 23:13:43,444 | INFO     | overall cleanup function is called
[2025-10-13 01:14:44] 2025-10-12 23:13:44,453 | INFO     | --- collectZombieJob: --- 10, [28058]
[2025-10-13 01:14:44] 2025-10-12 23:13:44,453 | INFO     | zombie collector waiting for pid 28058
[2025-10-13 01:14:44] 2025-10-12 23:13:44,454 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:14:44] 2025-10-12 23:13:44,454 | INFO     | collected zombie processes
[2025-10-13 01:14:44] 2025-10-12 23:13:44,454 | INFO     | will attempt to kill all subprocesses of pid=28058
[2025-10-13 01:14:44] 2025-10-12 23:13:44,570 | INFO     | process IDs to be killed: [28058] (in reverse order)
[2025-10-13 01:14:44] 2025-10-12 23:13:45,307 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:14:44] 2025-10-12 23:13:45,307 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:14:44] 2025-10-12 23:13:45,310 | INFO     | did not find any defunct processes belonging to 28058
[2025-10-13 01:14:44] 2025-10-12 23:13:45,313 | INFO     | did not find any defunct processes belonging to 28058
[2025-10-13 01:14:44] 2025-10-12 23:13:45,314 | INFO     | ready for new job
[2025-10-13 01:14:44] 2025-10-12 23:13:45,314 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:14:44] 2025-10-12 23:13:45,316 | INFO     | ***************************************
[2025-10-13 01:14:44] 2025-10-12 23:13:45,316 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:14:44] 2025-10-12 23:13:45,316 | INFO     | ***************************************
[2025-10-13 01:14:44] 2025-10-12 23:13:45,316 | INFO     | 
[2025-10-13 01:14:44] 2025-10-12 23:13:45,317 | INFO     | pilot is running in a VM
[2025-10-13 01:14:44] 2025-10-12 23:13:45,317 | INFO     | architecture information:
[2025-10-13 01:14:44] 2025-10-12 23:13:45,333 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:14:44] 2025-10-12 23:13:45,562 | INFO     | cat /etc/os-release:
[2025-10-13 01:14:44] NAME="CentOS Linux"
[2025-10-13 01:14:44] VERSION="7 (Core)"
[2025-10-13 01:14:44] ID="centos"
[2025-10-13 01:14:44] ID_LIKE="rhel fedora"
[2025-10-13 01:14:44] VERSION_ID="7"
[2025-10-13 01:14:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:14:44] ANSI_COLOR="0;31"
[2025-10-13 01:14:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:14:44] HOME_URL="https://www.centos.org/"
[2025-10-13 01:14:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:14:44] 
[2025-10-13 01:14:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:14:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:14:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:14:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:14:44] 
[2025-10-13 01:14:44] 2025-10-12 23:13:45,562 | INFO     | ***************************************
[2025-10-13 01:14:44] 2025-10-12 23:13:46,065 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2025-10-13 01:14:44] 2025-10-12 23:13:46,251 | INFO     | sufficient remaining disk space (494828257280 B)
[2025-10-13 01:14:44] 2025-10-12 23:13:46,251 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:14:44] 2025-10-12 23:13:46,251 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:14:44] 2025-10-12 23:13:46,251 | INFO     | update_server=False
[2025-10-13 01:14:44] 2025-10-12 23:13:46,251 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:14:44] 2025-10-12 23:13:46,252 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:14:44] 2025-10-12 23:13:46,556 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:14:44] 2025-10-12 23:13:46,557 | INFO     | aborting loop
[2025-10-13 01:14:44] 2025-10-12 23:13:46,661 | INFO     | all payload control threads have been joined
[2025-10-13 01:14:44] 2025-10-12 23:13:46,950 | INFO     | all data control threads have been joined
[2025-10-13 01:14:44] 2025-10-12 23:13:47,257 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:47,278 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:47,283 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:47,411 | INFO     | all job control threads have been joined
[2025-10-13 01:14:44] 2025-10-12 23:13:47,562 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:47,667 | INFO     | [payload] control thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:47,705 | INFO     | [job] validate thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:47,956 | INFO     | [data] control thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:48,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:14:44] 2025-10-12 23:13:48,064 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:48,076 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:48,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:48,216 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:48,259 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:48,417 | INFO     | [job] control thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:48,433 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:49,056 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:13:49,208 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:14:44] 2025-10-12 23:13:53,218 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:14:44] 2025-10-12 23:14:14,437 | INFO     | 15766s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-13 01:14:44] 2025-10-12 23:14:15,597 | INFO     | PID=21487 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 01:14:44] 2025-10-12 23:14:15,597 | INFO     | .. there are 9 such processes running
[2025-10-13 01:14:44] 2025-10-12 23:14:15,598 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:14:44] 2025-10-12 23:14:15,598 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:14:44] 2025-10-12 23:14:15,598 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:14:44] 2025-10-12 23:14:33,521 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:14:44] 2025-10-12 23:14:35,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139914940979008)>', '<ExcThread(monitor, started 139914498782976)>']
[2025-10-13 01:14:44] 2025-10-12 23:14:35,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:14:44] 2025-10-12 23:14:35,719 | INFO     | [monitor] control thread has ended
[2025-10-13 01:14:44] 2025-10-12 23:14:40,155 | INFO     | all workflow threads have been joined
[2025-10-13 01:14:44] 2025-10-12 23:14:40,155 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:14:44] 2025-10-12 23:14:40,156 | INFO     | traces error code: 0
[2025-10-13 01:14:44] 2025-10-12 23:14:40,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:14:44] 2025-10-12 23:14:40,418 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:14:44] 2025-10-12 23:14:40,484 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:14:44] 2025-10-12 23:14:40,532 [wrapper] pilotpid: 21487
[2025-10-13 01:14:44] 2025-10-12 23:14:40,630 [wrapper] Pilot exit status: 0
[2025-10-13 01:14:44] 2025-10-12 23:14:41,003 [wrapper] pandaids: 6839591570
[2025-10-13 01:14:44] 2025-10-12 23:14:41,676 [wrapper] cleanup supervisor_pilot 20782 21488
[2025-10-13 01:14:44] 2025-10-12 23:14:41,763 [wrapper] Test setup, not cleaning
[2025-10-13 01:14:44] 2025-10-12 23:14:41,849 [wrapper] apfmon messages muted
[2025-10-13 01:14:44] 2025-10-12 23:14:41,885 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:14:44] 2025-10-12 23:14:41,914 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:14:44]  *** Error codes and diagnostics ***
[2025-10-13 01:14:44]     "exeErrorCode": 0,
[2025-10-13 01:14:44]     "exeErrorDiag": "",
[2025-10-13 01:14:44]     "pilotErrorCode": 0,
[2025-10-13 01:14:44]     "pilotErrorDiag": "",
[2025-10-13 01:14:44]  *** Listing of results directory ***
[2025-10-13 01:14:44] total 414024
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc      5112 Oct 12 08:35 queuedata.json
[2025-10-13 01:14:44] -rwx------. 1 boinc boinc     36292 Oct 12 08:36 runpilot2-wrapper.sh
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc       100 Oct 12 20:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:14:44] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 20:47 run_atlas
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc       105 Oct 12 20:47 job.xml
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc      6383 Oct 12 20:47 init_data.xml
[2025-10-13 01:14:44] -rw-r--r--. 2 boinc boinc 221011038 Oct 12 20:47 EVNT.46676267._004516.pool.root.1
[2025-10-13 01:14:44] -rw-r--r--. 2 boinc boinc     15120 Oct 12 20:47 start_atlas.sh
[2025-10-13 01:14:44] drwxrwx--x. 2 boinc boinc        68 Oct 12 20:47 shared
[2025-10-13 01:14:44] -rw-r--r--. 2 boinc boinc    569679 Oct 12 20:47 input.tar.gz
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc         0 Oct 12 20:47 boinc_lockfile
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc      2550 Oct 12 20:47 pandaJob.out
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc    975528 Oct 12 20:51 agis_schedconf.cvmfs.json
[2025-10-13 01:14:44] drwx------. 5 boinc boinc      4096 Oct 12 20:51 pilot3
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc 193878613 Oct 13 01:10 HITS.46676269._072834.pool.root.1
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc       531 Oct 13 01:10 boinc_task_state.xml
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc      1020 Oct 13 01:11 memory_monitor_summary.json
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc   1560580 Oct 13 01:12 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc    480966 Oct 13 01:12 log.46676269._072834.job.log.tgz.1
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc      7781 Oct 13 01:13 heartbeat.json
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc        95 Oct 13 01:14 pilot_heartbeat.json
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc      8192 Oct 13 01:14 boinc_mmap_file
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc        28 Oct 13 01:14 wrapper_checkpoint.txt
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc      5000 Oct 13 01:14 pilotlog.txt
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc   2106169 Oct 13 01:14 log.46676269._072834.job.log.1
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc       357 Oct 13 01:14 output.list
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc       620 Oct 13 01:14 runtime_log
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc   2611200 Oct 13 01:14 result.tar.gz
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc      8703 Oct 13 01:14 runtime_log.err
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc       657 Oct 13 01:14 KKYNDmzr4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmPtiNDm23teLm.diag
[2025-10-13 01:14:44] -rw-r--r--. 1 boinc boinc     20642 Oct 13 01:14 stderr.txt
[2025-10-13 01:14:44] HITS file was successfully produced:
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc 193878613 Oct 13 01:10 shared/HITS.pool.root.1
[2025-10-13 01:14:44]  *** Contents of shared directory: ***
[2025-10-13 01:14:44] total 408296
[2025-10-13 01:14:44] -rw-r--r--. 2 boinc boinc 221011038 Oct 12 20:47 ATLAS.root_0
[2025-10-13 01:14:44] -rw-r--r--. 2 boinc boinc     15120 Oct 12 20:47 start_atlas.sh
[2025-10-13 01:14:44] -rw-r--r--. 2 boinc boinc    569679 Oct 12 20:47 input.tar.gz
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc 193878613 Oct 13 01:10 HITS.pool.root.1
[2025-10-13 01:14:44] -rw-------. 1 boinc boinc   2611200 Oct 13 01:14 result.tar.gz
01:14:45 (17708): run_atlas exited; CPU time 56223.969516
01:14:45 (17708): called boinc_finish(0)

</stderr_txt>
]]>

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