Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:53:35 (29687): wrapper (7.7.26015): starting
00:53:35 (29687): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 00:53:35] Arguments: --nthreads 8
[2025-10-13 00:53:35] Threads: 8
[2025-10-13 00:53:35] Checking for CVMFS
[2025-10-13 00:53:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:53:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:53:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:53:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:53:37] 2.11.2.0 4058 221167 139160 151640 2 61 15675460 25165825 4632 130560 0 127297417 99.886 70585121 3531 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 00:53:37] CVMFS is ok
[2025-10-13 00:53:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:53:37] Checking for apptainer binary...
[2025-10-13 00:53:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:53:37] Running /usr/bin/apptainer --version
[2025-10-13 00:53:38] apptainer version 1.3.2-1.el7
[2025-10-13 00:53:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:53:56] cg-vwn233.simple-grid.lan
[2025-10-13 00:53:56] apptainer works
[2025-10-13 00:53:56] Set ATHENA_PROC_NUMBER=8
[2025-10-13 00:53:56] Set ATHENA_CORE_NUMBER=8
[2025-10-13 00:53:57] Starting ATLAS job with PandaID=6839867541
[2025-10-13 00:53:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:11:00]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:11:00] 2025-10-13 03:09:47,036 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:11:00] 2025-10-13 03:09:47,037 | INFO     | sum of square deviations: 4233158440.0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,044 | INFO     | sum of deviations: 82728763090.99997
[2025-10-13 05:11:00] 2025-10-13 03:09:47,045 | INFO     | mean x: 1760317599.0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,045 | INFO     | mean y: 2439679.5439330544
[2025-10-13 05:11:00] 2025-10-13 03:09:47,045 | INFO     | -- intersect: -34399508576.5173
[2025-10-13 05:11:00] 2025-10-13 03:09:47,045 | INFO     | intersect: -34399508576.5173
[2025-10-13 05:11:00] 2025-10-13 03:09:47,045 | INFO     | chi2: 5.671500543235227
[2025-10-13 05:11:00] 2025-10-13 03:09:47,046 | INFO     | sum of square deviations: 3972995422.5
[2025-10-13 05:11:00] 2025-10-13 03:09:47,048 | INFO     | sum of deviations: 96775361069.0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,048 | INFO     | mean x: 1760317446.5
[2025-10-13 05:11:00] 2025-10-13 03:09:47,048 | INFO     | mean y: 2447756.05982906
[2025-10-13 05:11:00] 2025-10-13 03:09:47,048 | INFO     | -- intersect: -42875869071.675606
[2025-10-13 05:11:00] 2025-10-13 03:09:47,048 | INFO     | intersect: -42875869071.675606
[2025-10-13 05:11:00] 2025-10-13 03:09:47,049 | INFO     | chi2: 4.936510314360219
[2025-10-13 05:11:00] 2025-10-13 03:09:47,049 | INFO     | current chi2=4.936510314360219 (change=12.95936098871892 %)
[2025-10-13 05:11:00] 2025-10-13 03:09:47,049 | INFO     | right removable region: 233
[2025-10-13 05:11:00] 2025-10-13 03:09:47,050 | INFO     | sum of square deviations: 3972995422.5
[2025-10-13 05:11:00] 2025-10-13 03:09:47,052 | INFO     | sum of deviations: 3043130789.999998
[2025-10-13 05:11:00] 2025-10-13 03:09:47,052 | INFO     | mean x: 1760317751.5
[2025-10-13 05:11:00] 2025-10-13 03:09:47,052 | INFO     | mean y: 2486340.5213675215
[2025-10-13 05:11:00] 2025-10-13 03:09:47,052 | INFO     | -- intersect: -1345835663.4346325
[2025-10-13 05:11:00] 2025-10-13 03:09:47,052 | INFO     | intersect: -1345835663.4346325
[2025-10-13 05:11:00] 2025-10-13 03:09:47,052 | INFO     | chi2: 1.3333265226340456
[2025-10-13 05:11:00] 2025-10-13 03:09:47,053 | INFO     | current chi2=1.3333265226340456 (change=76.4907626743615 %)
[2025-10-13 05:11:00] 2025-10-13 03:09:47,053 | INFO     | sum of square deviations: 3723716330.0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,060 | INFO     | sum of deviations: -18123994016.0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,060 | INFO     | mean x: 1760317904.0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,061 | INFO     | mean y: 2499168.2227074234
[2025-10-13 05:11:00] 2025-10-13 03:09:47,061 | INFO     | -- intersect: 8570281547.702098
[2025-10-13 05:11:00] 2025-10-13 03:09:47,061 | INFO     | intersect: 8570281547.702098
[2025-10-13 05:11:00] 2025-10-13 03:09:47,061 | INFO     | chi2: 0.8450607218455632
[2025-10-13 05:11:00] 2025-10-13 03:09:47,061 | INFO     | current chi2=0.8450607218455632 (change=36.620122115615885 %)
[2025-10-13 05:11:00] 2025-10-13 03:09:47,062 | INFO     | sum of square deviations: 3485088600.0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,064 | INFO     | sum of deviations: -24016191812.5
[2025-10-13 05:11:00] 2025-10-13 03:09:47,064 | INFO     | mean x: 1760318056.5
[2025-10-13 05:11:00] 2025-10-13 03:09:47,064 | INFO     | mean y: 2502900.2276785714
[2025-10-13 05:11:00] 2025-10-13 03:09:47,064 | INFO     | -- intersect: 12133080038.470652
[2025-10-13 05:11:00] 2025-10-13 03:09:47,064 | INFO     | intersect: 12133080038.470652
[2025-10-13 05:11:00] 2025-10-13 03:09:47,064 | INFO     | chi2: 0.79959974677257
[2025-10-13 05:11:00] 2025-10-13 03:09:47,065 | INFO     | current chi2=0.79959974677257 (change=5.379610470323266 %)
[2025-10-13 05:11:00] 2025-10-13 03:09:47,065 | INFO     | left removable region: 30
[2025-10-13 05:11:00] 2025-10-13 03:09:47,065 | INFO     | sum of square deviations: 2593916542.0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,067 | INFO     | sum of deviations: -8778480902.999996
[2025-10-13 05:11:00] 2025-10-13 03:09:47,067 | INFO     | mean x: 1760318331.0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,067 | INFO     | mean y: 2513061.9901477834
[2025-10-13 05:11:00] 2025-10-13 03:09:47,067 | INFO     | -- intersect: 5959883163.022614
[2025-10-13 05:11:00] 2025-10-13 03:09:47,067 | INFO     | intersect: 5959883163.022614
[2025-10-13 05:11:00] 2025-10-13 03:09:47,067 | INFO     | chi2: 0.005767900081040258
[2025-10-13 05:11:00] 2025-10-13 03:09:47,068 | INFO     | -- intersect: 5959883163.022614
[2025-10-13 05:11:00] 2025-10-13 03:09:47,068 | INFO     | current memory leak: -3.38 B/s (using 203 data points, chi2=0.01)
[2025-10-13 05:11:00] 2025-10-13 03:09:47,068 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 05:11:00] 2025-10-13 03:09:47,069 | INFO     | ..............................
[2025-10-13 05:11:00] 2025-10-13 03:09:47,069 | INFO     | . Timing measurements:
[2025-10-13 05:11:00] 2025-10-13 03:09:47,069 | INFO     | . get job = 0 s
[2025-10-13 05:11:00] 2025-10-13 03:09:47,069 | INFO     | . initial setup = 7 s
[2025-10-13 05:11:00] 2025-10-13 03:09:47,069 | INFO     | . payload setup = 135 s
[2025-10-13 05:11:00] 2025-10-13 03:09:47,069 | INFO     | . stage-in = 0 s
[2025-10-13 05:11:00] 2025-10-13 03:09:47,069 | INFO     | . payload execution = 14708 s
[2025-10-13 05:11:00] 2025-10-13 03:09:47,069 | INFO     | . stage-out = 3 s
[2025-10-13 05:11:00] 2025-10-13 03:09:47,069 | INFO     | . log creation = 1 s
[2025-10-13 05:11:00] 2025-10-13 03:09:47,070 | INFO     | ..............................
[2025-10-13 05:11:00] 2025-10-13 03:09:47,353 | INFO     | 
[2025-10-13 05:11:00] 2025-10-13 03:09:47,353 | INFO     | job summary report
[2025-10-13 05:11:00] 2025-10-13 03:09:47,353 | INFO     | --------------------------------------------------
[2025-10-13 05:11:00] 2025-10-13 03:09:47,353 | INFO     | PanDA job id: 6839867541
[2025-10-13 05:11:00] 2025-10-13 03:09:47,353 | INFO     | task id: 46676269
[2025-10-13 05:11:00] 2025-10-13 03:09:47,353 | INFO     | errors: (none)
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | pilot state: finished 
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | transexitcode: 0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | exeerrorcode: 0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | exeerrordiag: 
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | exitcode: 0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | exitmsg: OK
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | cpuconsumptiontime: 55287 s
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | nevents: 400
[2025-10-13 05:11:00] 2025-10-13 03:09:47,354 | INFO     | neventsw: 0
[2025-10-13 05:11:00] 2025-10-13 03:09:47,355 | INFO     | pid: 7665
[2025-10-13 05:11:00] 2025-10-13 03:09:47,355 | INFO     | pgrp: 7665
[2025-10-13 05:11:00] 2025-10-13 03:09:47,355 | INFO     | corecount: 8
[2025-10-13 05:11:00] 2025-10-13 03:09:47,355 | INFO     | event service: False
[2025-10-13 05:11:00] 2025-10-13 03:09:47,355 | INFO     | sizes: {0: 2348630, 1: 2348885, 12: 2348885, 23: 2348913, 34: 2348941, 44: 2348969, 55: 2349125, 66: 2349153, 76: 2349181, 87: 2349237, 90: 2349527, 98: 2349835, 1
[2025-10-13 05:11:00] 2025-10-13 03:09:47,355 | INFO     | --------------------------------------------------
[2025-10-13 05:11:00] 2025-10-13 03:09:47,355 | INFO     | 
[2025-10-13 05:11:00] 2025-10-13 03:09:47,355 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2025-10-13 05:11:00] 2025-10-13 03:09:47,479 | INFO     | PID=1092 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 05:11:00] 2025-10-13 03:09:47,479 | INFO     | .. there are 9 such processes running
[2025-10-13 05:11:00] 2025-10-13 03:09:47,834 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,834 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,835 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,836 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:11:00] 2025-10-13 03:09:47,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,836 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:11:00] 2025-10-13 03:09:47,836 | INFO     | job 6839867541 has completed (purged errors)
[2025-10-13 05:11:00] 2025-10-13 03:09:47,837 | INFO     | overall cleanup function is called
[2025-10-13 05:11:00] 2025-10-13 03:09:48,845 | INFO     | --- collectZombieJob: --- 10, [7665]
[2025-10-13 05:11:00] 2025-10-13 03:09:48,846 | INFO     | zombie collector waiting for pid 7665
[2025-10-13 05:11:00] 2025-10-13 03:09:48,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:11:00] 2025-10-13 03:09:48,846 | INFO     | collected zombie processes
[2025-10-13 05:11:00] 2025-10-13 03:09:48,846 | INFO     | will attempt to kill all subprocesses of pid=7665
[2025-10-13 05:11:00] 2025-10-13 03:09:48,977 | INFO     | process IDs to be killed: [7665] (in reverse order)
[2025-10-13 05:11:00] 2025-10-13 03:09:49,760 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:11:00] 2025-10-13 03:09:49,760 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:11:00] 2025-10-13 03:09:49,764 | INFO     | did not find any defunct processes belonging to 7665
[2025-10-13 05:11:00] 2025-10-13 03:09:49,767 | INFO     | did not find any defunct processes belonging to 7665
[2025-10-13 05:11:00] 2025-10-13 03:09:49,768 | INFO     | ready for new job
[2025-10-13 05:11:00] 2025-10-13 03:09:49,768 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:11:00] 2025-10-13 03:09:49,770 | INFO     | ***************************************
[2025-10-13 05:11:00] 2025-10-13 03:09:49,770 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:11:00] 2025-10-13 03:09:49,770 | INFO     | ***************************************
[2025-10-13 05:11:00] 2025-10-13 03:09:49,770 | INFO     | 
[2025-10-13 05:11:00] 2025-10-13 03:09:49,771 | INFO     | pilot is running in a VM
[2025-10-13 05:11:00] 2025-10-13 03:09:49,771 | INFO     | architecture information:
[2025-10-13 05:11:00] 2025-10-13 03:09:49,779 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:11:00] 2025-10-13 03:09:49,931 | INFO     | cat /etc/os-release:
[2025-10-13 05:11:00] NAME="CentOS Linux"
[2025-10-13 05:11:00] VERSION="7 (Core)"
[2025-10-13 05:11:00] ID="centos"
[2025-10-13 05:11:00] ID_LIKE="rhel fedora"
[2025-10-13 05:11:00] VERSION_ID="7"
[2025-10-13 05:11:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:11:00] ANSI_COLOR="0;31"
[2025-10-13 05:11:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:11:00] HOME_URL="https://www.centos.org/"
[2025-10-13 05:11:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:11:00] 
[2025-10-13 05:11:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:11:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:11:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:11:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:11:00] 
[2025-10-13 05:11:00] 2025-10-13 03:09:49,931 | INFO     | ***************************************
[2025-10-13 05:11:00] 2025-10-13 03:09:50,435 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2025-10-13 05:11:00] 2025-10-13 03:09:50,574 | INFO     | sufficient remaining disk space (495560163328 B)
[2025-10-13 05:11:00] 2025-10-13 03:09:50,575 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:11:00] 2025-10-13 03:09:50,575 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:11:00] 2025-10-13 03:09:50,575 | INFO     | update_server=False
[2025-10-13 05:11:00] 2025-10-13 03:09:50,575 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:11:00] 2025-10-13 03:09:50,576 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:11:00] 2025-10-13 03:09:51,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:11:00] 2025-10-13 03:09:51,219 | INFO     | aborting loop
[2025-10-13 05:11:00] 2025-10-13 03:09:51,511 | INFO     | all job control threads have been joined
[2025-10-13 05:11:00] 2025-10-13 03:09:51,582 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:51,634 | INFO     | all data control threads have been joined
[2025-10-13 05:11:00] 2025-10-13 03:09:51,643 | INFO     | [job] validate thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:51,670 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:51,779 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:51,968 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:51,969 | INFO     | all payload control threads have been joined
[2025-10-13 05:11:00] 2025-10-13 03:09:52,019 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:52,196 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:52,224 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:52,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:11:00] 2025-10-13 03:09:52,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:11:00] 2025-10-13 03:09:52,517 | INFO     | [job] control thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:52,584 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:52,640 | INFO     | [data] control thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:52,656 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:52,940 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:52,975 | INFO     | [payload] control thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:53,374 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:09:56,246 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:11:00] 2025-10-13 03:10:19,677 | INFO     | PID=1092 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 05:11:00] 2025-10-13 03:10:19,677 | INFO     | .. there are 9 such processes running
[2025-10-13 05:11:00] 2025-10-13 03:10:19,679 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:11:00] 2025-10-13 03:10:19,679 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:11:00] 2025-10-13 03:10:19,679 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:11:00] 2025-10-13 03:10:50,529 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:11:00] 2025-10-13 03:10:51,414 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140211168057152)>', '<ExcThread(monitor, started 140210725701376)>']
[2025-10-13 05:11:00] 2025-10-13 03:10:51,868 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:11:00] 2025-10-13 03:10:51,869 | INFO     | [monitor] control thread has ended
[2025-10-13 05:11:00] 2025-10-13 03:10:56,440 | INFO     | all workflow threads have been joined
[2025-10-13 05:11:00] 2025-10-13 03:10:56,441 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:11:00] 2025-10-13 03:10:56,441 | INFO     | traces error code: 0
[2025-10-13 05:11:00] 2025-10-13 03:10:56,441 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:11:00] 2025-10-13 03:10:56,787 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:11:00] 2025-10-13 03:10:56,869 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:11:00] 2025-10-13 03:10:56,934 [wrapper] pilotpid: 1092
[2025-10-13 05:11:00] 2025-10-13 03:10:57,034 [wrapper] Pilot exit status: 0
[2025-10-13 05:11:00] 2025-10-13 03:10:57,517 [wrapper] pandaids: 6839867541
[2025-10-13 05:11:00] 2025-10-13 03:10:58,231 [wrapper] cleanup supervisor_pilot  1757 1093
[2025-10-13 05:11:00] 2025-10-13 03:10:58,345 [wrapper] Test setup, not cleaning
[2025-10-13 05:11:00] 2025-10-13 03:10:58,452 [wrapper] apfmon messages muted
[2025-10-13 05:11:00] 2025-10-13 03:10:58,559 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:11:00] 2025-10-13 03:10:58,629 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:11:00]  *** Error codes and diagnostics ***
[2025-10-13 05:11:00]     "exeErrorCode": 0,
[2025-10-13 05:11:00]     "exeErrorDiag": "",
[2025-10-13 05:11:00]     "pilotErrorCode": 0,
[2025-10-13 05:11:00]     "pilotErrorDiag": "",
[2025-10-13 05:11:00]  *** Listing of results directory ***
[2025-10-13 05:11:00] total 418356
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc    557409 Oct 12 12:38 pilot3.tar.gz
[2025-10-13 05:11:00] -rwx------. 1 boinc boinc     36292 Oct 12 12:56 runpilot2-wrapper.sh
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc      5112 Oct 12 12:56 queuedata.json
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc       100 Oct 13 00:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:11:00] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 00:53 run_atlas
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc       105 Oct 13 00:53 job.xml
[2025-10-13 05:11:00] -rw-r--r--. 2 boinc boinc 222844879 Oct 13 00:53 EVNT.46676267._003637.pool.root.1
[2025-10-13 05:11:00] -rw-r--r--. 2 boinc boinc     15120 Oct 13 00:53 start_atlas.sh
[2025-10-13 05:11:00] drwxrwx--x. 2 boinc boinc        68 Oct 13 00:53 shared
[2025-10-13 05:11:00] -rw-r--r--. 2 boinc boinc    569683 Oct 13 00:53 input.tar.gz
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc      6390 Oct 13 00:53 init_data.xml
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc         0 Oct 13 00:53 boinc_lockfile
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc      2550 Oct 13 00:53 pandaJob.out
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc    975603 Oct 13 00:57 agis_schedconf.cvmfs.json
[2025-10-13 05:11:00] drwx------. 5 boinc boinc      4096 Oct 13 00:57 pilot3
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc 196704938 Oct 13 05:06 HITS.46676269._076420.pool.root.1
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc       531 Oct 13 05:07 boinc_task_state.xml
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc      1017 Oct 13 05:08 memory_monitor_summary.json
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc   1560580 Oct 13 05:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc    456195 Oct 13 05:08 log.46676269._076420.job.log.tgz.1
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc      7781 Oct 13 05:09 heartbeat.json
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc        95 Oct 13 05:10 pilot_heartbeat.json
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc        28 Oct 13 05:10 wrapper_checkpoint.txt
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc      8192 Oct 13 05:10 boinc_mmap_file
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc      4883 Oct 13 05:10 pilotlog.txt
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc   2022287 Oct 13 05:10 log.46676269._076420.job.log.1
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc       357 Oct 13 05:10 output.list
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc       620 Oct 13 05:11 runtime_log
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc   2498560 Oct 13 05:11 result.tar.gz
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc       656 Oct 13 05:11 yYXMDm0v8R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm0gTMDmYCbcOm.diag
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc      8703 Oct 13 05:11 runtime_log.err
[2025-10-13 05:11:00] -rw-r--r--. 1 boinc boinc     20709 Oct 13 05:11 stderr.txt
[2025-10-13 05:11:00] HITS file was successfully produced:
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc 196704938 Oct 13 05:06 shared/HITS.pool.root.1
[2025-10-13 05:11:00]  *** Contents of shared directory: ***
[2025-10-13 05:11:00] total 412736
[2025-10-13 05:11:00] -rw-r--r--. 2 boinc boinc 222844879 Oct 13 00:53 ATLAS.root_0
[2025-10-13 05:11:00] -rw-r--r--. 2 boinc boinc     15120 Oct 13 00:53 start_atlas.sh
[2025-10-13 05:11:00] -rw-r--r--. 2 boinc boinc    569683 Oct 13 00:53 input.tar.gz
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc 196704938 Oct 13 05:06 HITS.pool.root.1
[2025-10-13 05:11:00] -rw-------. 1 boinc boinc   2498560 Oct 13 05:11 result.tar.gz
05:11:01 (29687): run_atlas exited; CPU time 55494.865262
05:11:01 (29687): called boinc_finish(0)

</stderr_txt>
]]>

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