Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:16:10 (28606): wrapper (7.7.26015): starting
01:16:10 (28606): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 01:16:10] Arguments: --nthreads 8
[2025-10-13 01:16:10] Threads: 8
[2025-10-13 01:16:10] Checking for CVMFS
[2025-10-13 01:16:11] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:16:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:16:11] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:16:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:16:13] 2.11.2.0 17186 221222 140628 151641 2 19 20430839 25165824 4632 130560 0 122750289 99.893 62960386 3160 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 01:16:13] CVMFS is ok
[2025-10-13 01:16:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:16:13] Checking for apptainer binary...
[2025-10-13 01:16:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:16:13] Running /usr/bin/apptainer --version
[2025-10-13 01:16:13] apptainer version 1.3.2-1.el7
[2025-10-13 01:16:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:16:20] cg-vwn311.simple-grid.lan
[2025-10-13 01:16:20] apptainer works
[2025-10-13 01:16:20] Set ATHENA_PROC_NUMBER=8
[2025-10-13 01:16:20] Set ATHENA_CORE_NUMBER=8
[2025-10-13 01:16:20] Starting ATLAS job with PandaID=6839868813
[2025-10-13 01:16:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:20:47]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:20:47] 2025-10-13 03:20:03,680 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 05:20:47] 2025-10-13 03:20:03,681 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 05:20:47] 2025-10-13 03:20:03,686 | INFO     | fitting pss+swap vs Time
[2025-10-13 05:20:47] 2025-10-13 03:20:03,687 | INFO     | sum of square deviations: 4127772278.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,689 | INFO     | sum of deviations: -51289796313.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,689 | INFO     | mean x: 1760318280.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,689 | INFO     | mean y: 2530239.1561181433
[2025-10-13 05:20:47] 2025-10-13 03:20:03,690 | INFO     | -- intersect: 21875434059.08203
[2025-10-13 05:20:47] 2025-10-13 03:20:03,690 | INFO     | intersect: 21875434059.08203
[2025-10-13 05:20:47] 2025-10-13 03:20:03,690 | INFO     | chi2: 2.527352492213979
[2025-10-13 05:20:47] 2025-10-13 03:20:03,691 | INFO     | sum of square deviations: 3871990738.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,693 | INFO     | sum of deviations: -34096952413.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,693 | INFO     | mean x: 1760318127.5
[2025-10-13 05:20:47] 2025-10-13 03:20:03,693 | INFO     | mean y: 2540330.3103448274
[2025-10-13 05:20:47] 2025-10-13 03:20:03,693 | INFO     | -- intersect: 15503993584.331213
[2025-10-13 05:20:47] 2025-10-13 03:20:03,693 | INFO     | intersect: 15503993584.331213
[2025-10-13 05:20:47] 2025-10-13 03:20:03,693 | INFO     | chi2: 1.760315095099228
[2025-10-13 05:20:47] 2025-10-13 03:20:03,694 | INFO     | current chi2=1.760315095099228 (change=30.34944272624278 %)
[2025-10-13 05:20:47] 2025-10-13 03:20:03,694 | INFO     | sum of square deviations: 3627000098.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,696 | INFO     | sum of deviations: -32826730869.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,696 | INFO     | mean x: 1760317975.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,696 | INFO     | mean y: 2541121.1101321587
[2025-10-13 05:20:47] 2025-10-13 03:20:03,696 | INFO     | -- intersect: 15934573888.644972
[2025-10-13 05:20:47] 2025-10-13 03:20:03,696 | INFO     | intersect: 15934573888.644972
[2025-10-13 05:20:47] 2025-10-13 03:20:03,697 | INFO     | chi2: 1.7583790097109173
[2025-10-13 05:20:47] 2025-10-13 03:20:03,697 | INFO     | current chi2=1.7583790097109173 (change=0.10998516082153158 %)
[2025-10-13 05:20:47] 2025-10-13 03:20:03,697 | INFO     | right removable region: 226
[2025-10-13 05:20:47] 2025-10-13 03:20:03,697 | INFO     | sum of square deviations: 3871990738.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,699 | INFO     | sum of deviations: -88150112623.49998
[2025-10-13 05:20:47] 2025-10-13 03:20:03,699 | INFO     | mean x: 1760318432.5
[2025-10-13 05:20:47] 2025-10-13 03:20:03,699 | INFO     | mean y: 2552004.754310345
[2025-10-13 05:20:47] 2025-10-13 03:20:03,700 | INFO     | -- intersect: 40078130325.54573
[2025-10-13 05:20:47] 2025-10-13 03:20:03,700 | INFO     | intersect: 40078130325.54573
[2025-10-13 05:20:47] 2025-10-13 03:20:03,700 | INFO     | chi2: 1.0233000234898253
[2025-10-13 05:20:47] 2025-10-13 03:20:03,700 | INFO     | current chi2=1.0233000234898253 (change=59.51098920145456 %)
[2025-10-13 05:20:47] 2025-10-13 03:20:03,701 | INFO     | sum of square deviations: 3627000098.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,703 | INFO     | sum of deviations: -84854679154.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,703 | INFO     | mean x: 1760318585.0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,703 | INFO     | mean y: 2549929.0176211456
[2025-10-13 05:20:47] 2025-10-13 03:20:03,703 | INFO     | -- intersect: 41185694319.16103
[2025-10-13 05:20:47] 2025-10-13 03:20:03,703 | INFO     | intersect: 41185694319.16103
[2025-10-13 05:20:47] 2025-10-13 03:20:03,704 | INFO     | chi2: 1.012824095870112
[2025-10-13 05:20:47] 2025-10-13 03:20:03,704 | INFO     | current chi2=1.012824095870112 (change=1.0237396051244634 %)
[2025-10-13 05:20:47] 2025-10-13 03:20:03,704 | INFO     | left removable region: 20
[2025-10-13 05:20:47] 2025-10-13 03:20:03,704 | INFO     | sum of square deviations: 2710627567.5
[2025-10-13 05:20:47] 2025-10-13 03:20:03,706 | INFO     | sum of deviations: -53416195160.5
[2025-10-13 05:20:47] 2025-10-13 03:20:03,706 | INFO     | mean x: 1760318554.5
[2025-10-13 05:20:47] 2025-10-13 03:20:03,706 | INFO     | mean y: 2553645.9077669904
[2025-10-13 05:20:47] 2025-10-13 03:20:03,707 | INFO     | -- intersect: 34691760152.62985
[2025-10-13 05:20:47] 2025-10-13 03:20:03,707 | INFO     | intersect: 34691760152.62985
[2025-10-13 05:20:47] 2025-10-13 03:20:03,707 | INFO     | chi2: 0.21191054476451301
[2025-10-13 05:20:47] 2025-10-13 03:20:03,707 | INFO     | -- intersect: 34691760152.62985
[2025-10-13 05:20:47] 2025-10-13 03:20:03,707 | INFO     | current memory leak: -19.71 B/s (using 206 data points, chi2=0.21)
[2025-10-13 05:20:47] 2025-10-13 03:20:03,708 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 05:20:47] 2025-10-13 03:20:03,708 | INFO     | ..............................
[2025-10-13 05:20:47] 2025-10-13 03:20:03,708 | INFO     | . Timing measurements:
[2025-10-13 05:20:47] 2025-10-13 03:20:03,709 | INFO     | . get job = 0 s
[2025-10-13 05:20:47] 2025-10-13 03:20:03,709 | INFO     | . initial setup = 2 s
[2025-10-13 05:20:47] 2025-10-13 03:20:03,709 | INFO     | . payload setup = 11 s
[2025-10-13 05:20:47] 2025-10-13 03:20:03,719 | INFO     | . stage-in = 0 s
[2025-10-13 05:20:47] 2025-10-13 03:20:03,719 | INFO     | . payload execution = 14436 s
[2025-10-13 05:20:47] 2025-10-13 03:20:03,719 | INFO     | . stage-out = 3 s
[2025-10-13 05:20:47] 2025-10-13 03:20:03,720 | INFO     | . log creation = 1 s
[2025-10-13 05:20:47] 2025-10-13 03:20:03,720 | INFO     | ..............................
[2025-10-13 05:20:47] 2025-10-13 03:20:03,882 | INFO     | 
[2025-10-13 05:20:47] 2025-10-13 03:20:03,882 | INFO     | job summary report
[2025-10-13 05:20:47] 2025-10-13 03:20:03,882 | INFO     | --------------------------------------------------
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | PanDA job id: 6839868813
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | task id: 46676269
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | errors: (none)
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | pilot state: finished 
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | transexitcode: 0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | exeerrorcode: 0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | exeerrordiag: 
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | exitcode: 0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,883 | INFO     | exitmsg: OK
[2025-10-13 05:20:47] 2025-10-13 03:20:03,884 | INFO     | cpuconsumptiontime: 55565 s
[2025-10-13 05:20:47] 2025-10-13 03:20:03,884 | INFO     | nevents: 400
[2025-10-13 05:20:47] 2025-10-13 03:20:03,884 | INFO     | neventsw: 0
[2025-10-13 05:20:47] 2025-10-13 03:20:03,884 | INFO     | pid: 6557
[2025-10-13 05:20:47] 2025-10-13 03:20:03,884 | INFO     | pgrp: 6557
[2025-10-13 05:20:47] 2025-10-13 03:20:03,884 | INFO     | corecount: 8
[2025-10-13 05:20:47] 2025-10-13 03:20:03,884 | INFO     | event service: False
[2025-10-13 05:20:47] 2025-10-13 03:20:03,884 | INFO     | sizes: {0: 2348631, 1: 2348886, 2: 2348886, 10: 2349176, 12: 2349204, 14451: 2379365, 14452: 2379492, 14455: 2388548, 14458: 2388604, 14553: 2388798}
[2025-10-13 05:20:47] 2025-10-13 03:20:03,884 | INFO     | --------------------------------------------------
[2025-10-13 05:20:47] 2025-10-13 03:20:03,885 | INFO     | 
[2025-10-13 05:20:47] 2025-10-13 03:20:03,885 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2025-10-13 05:20:47] 2025-10-13 03:20:04,002 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,003 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,003 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,003 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,003 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,003 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,003 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,003 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,003 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:20:47] 2025-10-13 03:20:04,005 | INFO     | job 6839868813 has completed (purged errors)
[2025-10-13 05:20:47] 2025-10-13 03:20:04,005 | INFO     | overall cleanup function is called
[2025-10-13 05:20:47] 2025-10-13 03:20:05,014 | INFO     | --- collectZombieJob: --- 10, [6557]
[2025-10-13 05:20:47] 2025-10-13 03:20:05,014 | INFO     | zombie collector waiting for pid 6557
[2025-10-13 05:20:47] 2025-10-13 03:20:05,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:20:47] 2025-10-13 03:20:05,015 | INFO     | collected zombie processes
[2025-10-13 05:20:47] 2025-10-13 03:20:05,015 | INFO     | will attempt to kill all subprocesses of pid=6557
[2025-10-13 05:20:47] 2025-10-13 03:20:05,120 | INFO     | process IDs to be killed: [6557] (in reverse order)
[2025-10-13 05:20:47] 2025-10-13 03:20:05,179 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:20:47] 2025-10-13 03:20:05,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:20:47] 2025-10-13 03:20:05,182 | INFO     | did not find any defunct processes belonging to 6557
[2025-10-13 05:20:47] 2025-10-13 03:20:05,186 | INFO     | did not find any defunct processes belonging to 6557
[2025-10-13 05:20:47] 2025-10-13 03:20:05,186 | INFO     | ready for new job
[2025-10-13 05:20:47] 2025-10-13 03:20:05,186 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:20:47] 2025-10-13 03:20:05,189 | INFO     | ***************************************
[2025-10-13 05:20:47] 2025-10-13 03:20:05,189 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:20:47] 2025-10-13 03:20:05,189 | INFO     | ***************************************
[2025-10-13 05:20:47] 2025-10-13 03:20:05,189 | INFO     | 
[2025-10-13 05:20:47] 2025-10-13 03:20:05,190 | INFO     | pilot is running in a VM
[2025-10-13 05:20:47] 2025-10-13 03:20:05,190 | INFO     | architecture information:
[2025-10-13 05:20:47] 2025-10-13 03:20:05,190 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:20:47] 2025-10-13 03:20:05,279 | INFO     | cat /etc/os-release:
[2025-10-13 05:20:47] NAME="CentOS Linux"
[2025-10-13 05:20:47] VERSION="7 (Core)"
[2025-10-13 05:20:47] ID="centos"
[2025-10-13 05:20:47] ID_LIKE="rhel fedora"
[2025-10-13 05:20:47] VERSION_ID="7"
[2025-10-13 05:20:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:20:47] ANSI_COLOR="0;31"
[2025-10-13 05:20:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:20:47] HOME_URL="https://www.centos.org/"
[2025-10-13 05:20:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:20:47] 
[2025-10-13 05:20:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:20:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:20:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:20:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:20:47] 
[2025-10-13 05:20:47] 2025-10-13 03:20:05,279 | INFO     | ***************************************
[2025-10-13 05:20:47] 2025-10-13 03:20:05,784 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2025-10-13 05:20:47] 2025-10-13 03:20:05,993 | INFO     | sufficient remaining disk space (495101935616 B)
[2025-10-13 05:20:47] 2025-10-13 03:20:05,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:20:47] 2025-10-13 03:20:05,993 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:20:47] 2025-10-13 03:20:05,993 | INFO     | update_server=False
[2025-10-13 05:20:47] 2025-10-13 03:20:05,993 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:20:47] 2025-10-13 03:20:05,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:20:47] 2025-10-13 03:20:06,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:20:47] 2025-10-13 03:20:06,006 | INFO     | aborting loop
[2025-10-13 05:20:47] 2025-10-13 03:20:06,586 | INFO     | all data control threads have been joined
[2025-10-13 05:20:47] 2025-10-13 03:20:06,999 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:07,012 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:07,230 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:07,375 | INFO     | all payload control threads have been joined
[2025-10-13 05:20:47] 2025-10-13 03:20:07,392 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:20:47] 2025-10-13 03:20:07,441 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:07,447 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:07,592 | INFO     | [data] control thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:07,661 | INFO     | all job control threads have been joined
[2025-10-13 05:20:47] 2025-10-13 03:20:07,789 | INFO     | [job] validate thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:07,950 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:08,049 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:08,381 | INFO     | [payload] control thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:08,437 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:08,470 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:08,667 | INFO     | [job] control thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:08,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:20:47] 2025-10-13 03:20:09,400 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:09,882 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:10,004 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:20:47] 2025-10-13 03:20:36,290 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:20:47] 2025-10-13 03:20:36,297 | INFO     | PID=32488 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 05:20:47] 2025-10-13 03:20:36,297 | INFO     | .. there are 9 such processes running
[2025-10-13 05:20:47] 2025-10-13 03:20:36,299 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:20:47] 2025-10-13 03:20:36,299 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:20:47] 2025-10-13 03:20:36,299 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:20:47] 2025-10-13 03:20:36,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433435539264)>', '<ExcThread(monitor, started 140432998651648)>']
[2025-10-13 05:20:47] 2025-10-13 03:20:37,305 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:20:47] 2025-10-13 03:20:37,305 | INFO     | [monitor] control thread has ended
[2025-10-13 05:20:47] 2025-10-13 03:20:41,466 | INFO     | all workflow threads have been joined
[2025-10-13 05:20:47] 2025-10-13 03:20:41,466 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:20:47] 2025-10-13 03:20:41,467 | INFO     | traces error code: 0
[2025-10-13 05:20:47] 2025-10-13 03:20:41,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:20:47] 2025-10-13 03:20:41,832 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:20:47] 2025-10-13 03:20:41,950 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:20:47] 2025-10-13 03:20:42,042 [wrapper] pilotpid: 32488
[2025-10-13 05:20:47] 2025-10-13 03:20:42,165 [wrapper] Pilot exit status: 0
[2025-10-13 05:20:47] 2025-10-13 03:20:42,648 [wrapper] pandaids: 6839868813
[2025-10-13 05:20:47] 2025-10-13 03:20:43,651 [wrapper] cleanup supervisor_pilot 15805 32489
[2025-10-13 05:20:47] 2025-10-13 03:20:43,733 [wrapper] Test setup, not cleaning
[2025-10-13 05:20:47] 2025-10-13 03:20:43,798 [wrapper] apfmon messages muted
[2025-10-13 05:20:47] 2025-10-13 03:20:43,862 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:20:47] 2025-10-13 03:20:43,962 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:20:47]  *** Error codes and diagnostics ***
[2025-10-13 05:20:47]     "exeErrorCode": 0,
[2025-10-13 05:20:47]     "exeErrorDiag": "",
[2025-10-13 05:20:47]     "pilotErrorCode": 0,
[2025-10-13 05:20:47]     "pilotErrorDiag": "",
[2025-10-13 05:20:47]  *** Listing of results directory ***
[2025-10-13 05:20:47] total 414716
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc    557409 Oct 12 12:57 pilot3.tar.gz
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc      5112 Oct 12 13:05 queuedata.json
[2025-10-13 05:20:47] -rwx------. 1 boinc boinc     36292 Oct 12 13:06 runpilot2-wrapper.sh
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc       100 Oct 13 01:16 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:20:47] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 01:16 run_atlas
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc       105 Oct 13 01:16 job.xml
[2025-10-13 05:20:47] -rw-r--r--. 2 boinc boinc 221595158 Oct 13 01:16 EVNT.46676267._003661.pool.root.1
[2025-10-13 05:20:47] -rw-r--r--. 2 boinc boinc     15120 Oct 13 01:16 start_atlas.sh
[2025-10-13 05:20:47] drwxrwx--x. 2 boinc boinc        68 Oct 13 01:16 shared
[2025-10-13 05:20:47] -rw-r--r--. 2 boinc boinc    569685 Oct 13 01:16 input.tar.gz
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc      6385 Oct 13 01:16 init_data.xml
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc         0 Oct 13 01:16 boinc_lockfile
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc      2550 Oct 13 01:16 pandaJob.out
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc    975603 Oct 13 01:17 agis_schedconf.cvmfs.json
[2025-10-13 05:20:47] drwx------. 5 boinc boinc      4096 Oct 13 01:17 pilot3
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc 194320898 Oct 13 05:17 HITS.46676269._076762.pool.root.1
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc       531 Oct 13 05:17 boinc_task_state.xml
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc      1020 Oct 13 05:18 memory_monitor_summary.json
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc   1560580 Oct 13 05:18 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc    471250 Oct 13 05:18 log.46676269._076762.job.log.tgz.1
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc      7786 Oct 13 05:20 heartbeat.json
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc        28 Oct 13 05:20 wrapper_checkpoint.txt
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc      8192 Oct 13 05:20 boinc_mmap_file
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc        95 Oct 13 05:20 pilot_heartbeat.json
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc      4885 Oct 13 05:20 pilotlog.txt
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc   1959266 Oct 13 05:20 log.46676269._076762.job.log.1
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc       357 Oct 13 05:20 output.list
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc       620 Oct 13 05:20 runtime_log
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc   2447360 Oct 13 05:20 result.tar.gz
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc       657 Oct 13 05:20 XUsKDm748R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLZjNDmLQEs9m.diag
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc      8717 Oct 13 05:20 runtime_log.err
[2025-10-13 05:20:47] -rw-r--r--. 1 boinc boinc     20577 Oct 13 05:20 stderr.txt
[2025-10-13 05:20:47] HITS file was successfully produced:
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc 194320898 Oct 13 05:17 shared/HITS.pool.root.1
[2025-10-13 05:20:47]  *** Contents of shared directory: ***
[2025-10-13 05:20:47] total 409140
[2025-10-13 05:20:47] -rw-r--r--. 2 boinc boinc 221595158 Oct 13 01:16 ATLAS.root_0
[2025-10-13 05:20:47] -rw-r--r--. 2 boinc boinc     15120 Oct 13 01:16 start_atlas.sh
[2025-10-13 05:20:47] -rw-r--r--. 2 boinc boinc    569685 Oct 13 01:16 input.tar.gz
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc 194320898 Oct 13 05:17 HITS.pool.root.1
[2025-10-13 05:20:47] -rw-------. 1 boinc boinc   2447360 Oct 13 05:20 result.tar.gz
05:20:48 (28606): run_atlas exited; CPU time 55750.844145
05:20:48 (28606): called boinc_finish(0)

</stderr_txt>
]]>

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