Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:38:21 (23073): wrapper (7.7.26015): starting
10:38:21 (23073): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:38:21] Arguments: --nthreads 8
[2025-10-12 10:38:21] Threads: 8
[2025-10-12 10:38:21] Checking for CVMFS
[2025-10-12 10:38:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:38:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:38:22] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:38:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:38:22] 2.11.2.0 14221 52997 121892 151623 1 188 16440072 18432001 1833 130560 0 49221258 99.976 2264832 37565 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:38:22] CVMFS is ok
[2025-10-12 10:38:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:38:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:38:22] Further information can be found at the LHC@home message board.
[2025-10-12 10:38:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:38:22] Checking for apptainer binary...
[2025-10-12 10:38:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:38:22] Running /usr/bin/apptainer --version
[2025-10-12 10:38:22] apptainer version 1.3.2-1.el7
[2025-10-12 10:38:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:38:22] c-206-9.aglt2.org
[2025-10-12 10:38:22] apptainer works
[2025-10-12 10:38:23] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:38:23] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:38:23] Starting ATLAS job with PandaID=6839867668
[2025-10-12 10:38:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:40:56]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:40:56] 2025-10-12 17:39:59,188 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:40:56] 2025-10-12 17:39:59,193 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:40:56] 2025-10-12 17:39:59,193 | INFO     | sum of square deviations: 1748737904.5
[2025-10-12 13:40:56] 2025-10-12 17:39:59,195 | INFO     | sum of deviations: 18563643250.5
[2025-10-12 13:40:56] 2025-10-12 17:39:59,195 | INFO     | mean x: 1760285335.5
[2025-10-12 13:40:56] 2025-10-12 17:39:59,195 | INFO     | mean y: 2476101.511235955
[2025-10-12 13:40:56] 2025-10-12 17:39:59,195 | INFO     | -- intersect: -18683748348.25948
[2025-10-12 13:40:56] 2025-10-12 17:39:59,196 | INFO     | intersect: -18683748348.25948
[2025-10-12 13:40:56] 2025-10-12 17:39:59,196 | INFO     | chi2: 1.467763530033095
[2025-10-12 13:40:56] 2025-10-12 17:39:59,197 | INFO     | sum of square deviations: 1605470102.0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,198 | INFO     | sum of deviations: 17939121864.999992
[2025-10-12 13:40:56] 2025-10-12 17:39:59,198 | INFO     | mean x: 1760285183.0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,198 | INFO     | mean y: 2475436.572254335
[2025-10-12 13:40:56] 2025-10-12 17:39:59,199 | INFO     | -- intersect: -19666511469.912544
[2025-10-12 13:40:56] 2025-10-12 17:39:59,199 | INFO     | intersect: -19666511469.912544
[2025-10-12 13:40:56] 2025-10-12 17:39:59,199 | INFO     | chi2: 1.468975214350237
[2025-10-12 13:40:56] 2025-10-12 17:39:59,199 | INFO     | current chi2=1.468975214350237 (change=-0.08255310152820158 %)
[2025-10-12 13:40:56] 2025-10-12 17:39:59,199 | INFO     | right removable region: 172
[2025-10-12 13:40:56] 2025-10-12 17:39:59,200 | INFO     | sum of square deviations: 1605470102.0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,201 | INFO     | sum of deviations: -8986927785.000002
[2025-10-12 13:40:56] 2025-10-12 17:39:59,201 | INFO     | mean x: 1760285488.0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,202 | INFO     | mean y: 2505087.289017341
[2025-10-12 13:40:56] 2025-10-12 17:39:59,202 | INFO     | -- intersect: 9856041781.577133
[2025-10-12 13:40:56] 2025-10-12 17:39:59,202 | INFO     | intersect: 9856041781.577133
[2025-10-12 13:40:56] 2025-10-12 17:39:59,202 | INFO     | chi2: 0.04031859870845666
[2025-10-12 13:40:56] 2025-10-12 17:39:59,203 | INFO     | current chi2=0.04031859870845666 (change=97.25305896464484 %)
[2025-10-12 13:40:56] 2025-10-12 17:39:59,203 | INFO     | sum of square deviations: 1470248962.0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,204 | INFO     | sum of deviations: -9897751999.499998
[2025-10-12 13:40:56] 2025-10-12 17:39:59,204 | INFO     | mean x: 1760285640.5
[2025-10-12 13:40:56] 2025-10-12 17:39:59,205 | INFO     | mean y: 2506066.648809524
[2025-10-12 13:40:56] 2025-10-12 17:39:59,205 | INFO     | -- intersect: 11852792085.044931
[2025-10-12 13:40:56] 2025-10-12 17:39:59,205 | INFO     | intersect: 11852792085.044931
[2025-10-12 13:40:56] 2025-10-12 17:39:59,205 | INFO     | chi2: 0.026922438864800436
[2025-10-12 13:40:56] 2025-10-12 17:39:59,206 | INFO     | current chi2=0.026922438864800436 (change=33.22575752328027 %)
[2025-10-12 13:40:56] 2025-10-12 17:39:59,206 | INFO     | sum of square deviations: 1342841922.0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,207 | INFO     | sum of deviations: -8023874791.0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,207 | INFO     | mean x: 1760285793.0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,208 | INFO     | mean y: 2503819.509202454
[2025-10-12 13:40:56] 2025-10-12 17:39:59,208 | INFO     | -- intersect: 10520728316.381996
[2025-10-12 13:40:56] 2025-10-12 17:39:59,208 | INFO     | intersect: 10520728316.381996
[2025-10-12 13:40:56] 2025-10-12 17:39:59,208 | INFO     | chi2: 0.02552489456135955
[2025-10-12 13:40:56] 2025-10-12 17:39:59,209 | INFO     | current chi2=0.02552489456135955 (change=5.191001864500834 %)
[2025-10-12 13:40:56] 2025-10-12 17:39:59,209 | INFO     | left removable region: 30
[2025-10-12 13:40:56] 2025-10-12 17:39:59,209 | INFO     | sum of square deviations: 887813855.5
[2025-10-12 13:40:56] 2025-10-12 17:39:59,210 | INFO     | sum of deviations: -945753058.4999999
[2025-10-12 13:40:56] 2025-10-12 17:39:59,210 | INFO     | mean x: 1760286067.5
[2025-10-12 13:40:56] 2025-10-12 17:39:59,211 | INFO     | mean y: 2493848.767605634
[2025-10-12 13:40:56] 2025-10-12 17:39:59,211 | INFO     | -- intersect: 1877657118.4774263
[2025-10-12 13:40:56] 2025-10-12 17:39:59,211 | INFO     | intersect: 1877657118.4774263
[2025-10-12 13:40:56] 2025-10-12 17:39:59,211 | INFO     | chi2: 0.008305049045496742
[2025-10-12 13:40:56] 2025-10-12 17:39:59,212 | INFO     | -- intersect: 1877657118.4774263
[2025-10-12 13:40:56] 2025-10-12 17:39:59,212 | INFO     | current memory leak: -1.07 B/s (using 142 data points, chi2=0.01)
[2025-10-12 13:40:56] 2025-10-12 17:39:59,212 | INFO     | could have reported an average CPU frequency of 2538 MHz (9 samples)
[2025-10-12 13:40:56] 2025-10-12 17:39:59,213 | INFO     | ..............................
[2025-10-12 13:40:56] 2025-10-12 17:39:59,213 | INFO     | . Timing measurements:
[2025-10-12 13:40:56] 2025-10-12 17:39:59,213 | INFO     | . get job = 0 s
[2025-10-12 13:40:56] 2025-10-12 17:39:59,213 | INFO     | . initial setup = 2 s
[2025-10-12 13:40:56] 2025-10-12 17:39:59,213 | INFO     | . payload setup = 4 s
[2025-10-12 13:40:56] 2025-10-12 17:39:59,213 | INFO     | . stage-in = 0 s
[2025-10-12 13:40:56] 2025-10-12 17:39:59,214 | INFO     | . payload execution = 10851 s
[2025-10-12 13:40:56] 2025-10-12 17:39:59,214 | INFO     | . stage-out = 2 s
[2025-10-12 13:40:56] 2025-10-12 17:39:59,214 | INFO     | . log creation = 0 s
[2025-10-12 13:40:56] 2025-10-12 17:39:59,214 | INFO     | ..............................
[2025-10-12 13:40:56] 2025-10-12 17:39:59,376 | INFO     | 
[2025-10-12 13:40:56] 2025-10-12 17:39:59,376 | INFO     | job summary report
[2025-10-12 13:40:56] 2025-10-12 17:39:59,376 | INFO     | --------------------------------------------------
[2025-10-12 13:40:56] 2025-10-12 17:39:59,376 | INFO     | PanDA job id: 6839867668
[2025-10-12 13:40:56] 2025-10-12 17:39:59,376 | INFO     | task id: 46676269
[2025-10-12 13:40:56] 2025-10-12 17:39:59,377 | INFO     | errors: (none)
[2025-10-12 13:40:56] 2025-10-12 17:39:59,377 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:40:56] 2025-10-12 17:39:59,377 | INFO     | pilot state: finished 
[2025-10-12 13:40:56] 2025-10-12 17:39:59,377 | INFO     | transexitcode: 0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,377 | INFO     | exeerrorcode: 0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,378 | INFO     | exeerrordiag: 
[2025-10-12 13:40:56] 2025-10-12 17:39:59,378 | INFO     | exitcode: 0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,378 | INFO     | exitmsg: OK
[2025-10-12 13:40:56] 2025-10-12 17:39:59,378 | INFO     | cpuconsumptiontime: 82513 s
[2025-10-12 13:40:56] 2025-10-12 17:39:59,378 | INFO     | nevents: 400
[2025-10-12 13:40:56] 2025-10-12 17:39:59,378 | INFO     | neventsw: 0
[2025-10-12 13:40:56] 2025-10-12 17:39:59,379 | INFO     | pid: 704
[2025-10-12 13:40:56] 2025-10-12 17:39:59,379 | INFO     | pgrp: 704
[2025-10-12 13:40:56] 2025-10-12 17:39:59,379 | INFO     | corecount: 8
[2025-10-12 13:40:56] 2025-10-12 17:39:59,379 | INFO     | event service: False
[2025-10-12 13:40:56] 2025-10-12 17:39:59,379 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 10860: 2378246, 10864: 2387272, 10865: 2387328, 10871: 2387714}
[2025-10-12 13:40:56] 2025-10-12 17:39:59,379 | INFO     | --------------------------------------------------
[2025-10-12 13:40:56] 2025-10-12 17:39:59,380 | INFO     | 
[2025-10-12 13:40:56] 2025-10-12 17:39:59,380 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 13:40:56] 2025-10-12 17:39:59,399 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,400 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,400 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,400 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,400 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,400 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,400 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,401 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,401 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,401 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,401 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,401 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,401 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,402 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,402 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,402 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,402 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,402 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:40:56] 2025-10-12 17:39:59,402 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,402 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:40:56] 2025-10-12 17:39:59,403 | INFO     | job 6839867668 has completed (purged errors)
[2025-10-12 13:40:56] 2025-10-12 17:39:59,403 | INFO     | overall cleanup function is called
[2025-10-12 13:40:56] 2025-10-12 17:40:00,411 | INFO     | --- collectZombieJob: --- 10, [704]
[2025-10-12 13:40:56] 2025-10-12 17:40:00,411 | INFO     | zombie collector waiting for pid 704
[2025-10-12 13:40:56] 2025-10-12 17:40:00,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:40:56] 2025-10-12 17:40:00,411 | INFO     | collected zombie processes
[2025-10-12 13:40:56] 2025-10-12 17:40:00,411 | INFO     | will attempt to kill all subprocesses of pid=704
[2025-10-12 13:40:56] 2025-10-12 17:40:00,564 | INFO     | process IDs to be killed: [704] (in reverse order)
[2025-10-12 13:40:56] 2025-10-12 17:40:00,622 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:40:56] 2025-10-12 17:40:00,622 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:40:56] 2025-10-12 17:40:00,628 | INFO     | did not find any defunct processes belonging to 704
[2025-10-12 13:40:56] 2025-10-12 17:40:00,633 | INFO     | did not find any defunct processes belonging to 704
[2025-10-12 13:40:56] 2025-10-12 17:40:00,633 | INFO     | ready for new job
[2025-10-12 13:40:56] 2025-10-12 17:40:00,633 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:40:56] 2025-10-12 17:40:00,635 | INFO     | ***************************************
[2025-10-12 13:40:56] 2025-10-12 17:40:00,635 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:40:56] 2025-10-12 17:40:00,635 | INFO     | ***************************************
[2025-10-12 13:40:56] 2025-10-12 17:40:00,635 | INFO     | 
[2025-10-12 13:40:56] 2025-10-12 17:40:00,637 | INFO     | architecture information:
[2025-10-12 13:40:56] 2025-10-12 17:40:00,637 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:40:56] 2025-10-12 17:40:00,649 | INFO     | cat /etc/os-release:
[2025-10-12 13:40:56] NAME="CentOS Linux"
[2025-10-12 13:40:56] VERSION="7 (Core)"
[2025-10-12 13:40:56] ID="centos"
[2025-10-12 13:40:56] ID_LIKE="rhel fedora"
[2025-10-12 13:40:56] VERSION_ID="7"
[2025-10-12 13:40:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:40:56] ANSI_COLOR="0;31"
[2025-10-12 13:40:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:40:56] HOME_URL="https://www.centos.org/"
[2025-10-12 13:40:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:40:56] 
[2025-10-12 13:40:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:40:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:40:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:40:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:40:56] 
[2025-10-12 13:40:56] 2025-10-12 17:40:00,650 | INFO     | ***************************************
[2025-10-12 13:40:56] 2025-10-12 17:40:01,154 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 13:40:56] 2025-10-12 17:40:01,168 | INFO     | sufficient remaining disk space (28377612288 B)
[2025-10-12 13:40:56] 2025-10-12 17:40:01,216 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:40:56] 2025-10-12 17:40:01,216 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:40:56] 2025-10-12 17:40:01,217 | INFO     | update_server=False
[2025-10-12 13:40:56] 2025-10-12 17:40:01,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:40:56] 2025-10-12 17:40:01,217 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:40:56] 2025-10-12 17:40:01,527 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 13:40:56] 2025-10-12 17:40:01,527 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 13:40:56] 2025-10-12 17:40:01,527 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:40:56] 2025-10-12 17:40:01,527 | INFO     | will abort loop
[2025-10-12 13:40:56] 2025-10-12 17:40:01,825 | INFO     | all data control threads have been joined
[2025-10-12 13:40:56] 2025-10-12 17:40:01,886 | INFO     | all payload control threads have been joined
[2025-10-12 13:40:56] 2025-10-12 17:40:02,223 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:02,223 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:02,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:40:56] 2025-10-12 17:40:02,322 | INFO     | all job control threads have been joined
[2025-10-12 13:40:56] 2025-10-12 17:40:02,397 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:02,461 | INFO     | [job] validate thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:02,469 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:02,534 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:02,830 | INFO     | [data] control thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:02,891 | INFO     | [payload] control thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:03,074 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:03,085 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:03,238 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:03,327 | INFO     | [job] control thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:03,591 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:40:56] 2025-10-12 17:40:03,619 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:03,693 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:04,237 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:07,597 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:40:56] 2025-10-12 17:40:30,983 | INFO     | PID=26755 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:40:56] 2025-10-12 17:40:30,984 | INFO     | .. there are 3 such processes running
[2025-10-12 13:40:56] 2025-10-12 17:40:30,984 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:40:56] 2025-10-12 17:40:30,985 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:40:56] 2025-10-12 17:40:30,985 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:40:56] 2025-10-12 17:40:50,662 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:40:56] 2025-10-12 17:40:51,097 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140712944052032)>', '<ExcThread(monitor, started 140712498677504)>']
[2025-10-12 13:40:56] 2025-10-12 17:40:52,087 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:40:56] 2025-10-12 17:40:52,087 | INFO     | [monitor] control thread has ended
[2025-10-12 13:40:56] 2025-10-12 17:40:56,122 | INFO     | all workflow threads have been joined
[2025-10-12 13:40:56] 2025-10-12 17:40:56,122 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:40:56] 2025-10-12 17:40:56,122 | INFO     | traces error code: 0
[2025-10-12 13:40:56] 2025-10-12 17:40:56,123 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:40:56] 2025-10-12 17:40:56,250 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:40:56] 2025-10-12 17:40:56,253 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:40:56] 2025-10-12 17:40:56,255 [wrapper] pilotpid: 26755
[2025-10-12 13:40:56] 2025-10-12 17:40:56,258 [wrapper] Pilot exit status: 0
[2025-10-12 13:40:56] 2025-10-12 17:40:56,273 [wrapper] pandaids: 6839867668
[2025-10-12 13:40:56] 2025-10-12 17:40:56,302 [wrapper] cleanup supervisor_pilot  4768 26756
[2025-10-12 13:40:56] 2025-10-12 17:40:56,304 [wrapper] Test setup, not cleaning
[2025-10-12 13:40:56] 2025-10-12 17:40:56,307 [wrapper] apfmon messages muted
[2025-10-12 13:40:56] 2025-10-12 17:40:56,310 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:40:56] 2025-10-12 17:40:56,312 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:40:56]  *** Error codes and diagnostics ***
[2025-10-12 13:40:56]     "exeErrorCode": 0,
[2025-10-12 13:40:56]     "exeErrorDiag": "",
[2025-10-12 13:40:56]     "pilotErrorCode": 0,
[2025-10-12 13:40:56]     "pilotErrorDiag": "",
[2025-10-12 13:40:56]  *** Listing of results directory ***
[2025-10-12 13:40:56] total 412108
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 06:57 pilot3.tar.gz
[2025-10-12 13:40:56] -rwx------ 1 boincer umatlas     36292 Oct 12 06:59 runpilot2-wrapper.sh
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 06:59 queuedata.json
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:40:56] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:38 run_atlas
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:38 job.xml
[2025-10-12 13:40:56] -rw-r--r-- 2 boincer umatlas 219544968 Oct 12 10:38 EVNT.46676267._003650.pool.root.1
[2025-10-12 13:40:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:38 start_atlas.sh
[2025-10-12 13:40:56] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:38 shared
[2025-10-12 13:40:56] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 10:38 input.tar.gz
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:38 boinc_lockfile
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 10:38 pandaJob.out
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas    975528 Oct 12 10:38 agis_schedconf.cvmfs.json
[2025-10-12 13:40:56] drwx------ 5 boincer umatlas      4096 Oct 12 10:38 pilot3
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas 194674835 Oct 12 13:39 HITS.46676269._076547.pool.root.1
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas      1051 Oct 12 13:39 memory_monitor_summary.json
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas       531 Oct 12 13:39 boinc_task_state.xml
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas   1560580 Oct 12 13:39 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas    408446 Oct 12 13:39 log.46676269._076547.job.log.tgz.1
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas      7849 Oct 12 13:39 heartbeat.json
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas      5951 Oct 12 13:40 init_data.xml
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas        95 Oct 12 13:40 pilot_heartbeat.json
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:40 boinc_mmap_file
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas        28 Oct 12 13:40 wrapper_checkpoint.txt
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas      5007 Oct 12 13:40 pilotlog.txt
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas   1529235 Oct 12 13:40 log.46676269._076547.job.log.1
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas       357 Oct 12 13:40 output.list
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:40 runtime_log
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas   1955840 Oct 12 13:40 result.tar.gz
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas      8699 Oct 12 13:40 runtime_log.err
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas       660 Oct 12 13:40 QzjLDmmy8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFXjNDmS8wPSn.diag
[2025-10-12 13:40:56] -rw-r--r-- 1 boincer umatlas     20883 Oct 12 13:40 stderr.txt
[2025-10-12 13:40:56] HITS file was successfully produced:
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas 194674835 Oct 12 13:39 shared/HITS.pool.root.1
[2025-10-12 13:40:56]  *** Contents of shared directory: ***
[2025-10-12 13:40:56] total 407008
[2025-10-12 13:40:56] -rw-r--r-- 2 boincer umatlas 219544968 Oct 12 10:38 ATLAS.root_0
[2025-10-12 13:40:56] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:38 start_atlas.sh
[2025-10-12 13:40:56] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 10:38 input.tar.gz
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas 194674835 Oct 12 13:39 HITS.pool.root.1
[2025-10-12 13:40:56] -rw------- 1 boincer umatlas   1955840 Oct 12 13:40 result.tar.gz
13:40:57 (23073): run_atlas exited; CPU time 82648.671431
13:40:57 (23073): called boinc_finish(0)

</stderr_txt>
]]>

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