Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:56:57 (3042622): wrapper (7.7.26015): starting
02:56:57 (3042622): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 02:56:57] Arguments: --nthreads 3
[2025-10-13 02:56:57] Threads: 3
[2025-10-13 02:56:57] Checking for CVMFS
[2025-10-13 02:56:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:56:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:56:57] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:56:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:56:57] 2.9.2.0 1568863 4955 86820 151642 1 57 28557432 36864001 0 130560 0 3874715 99.991 173132 839 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-13 02:56:57] CVMFS is ok
[2025-10-13 02:56:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:56:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:56:57] Further information can be found at the LHC@home message board.
[2025-10-13 02:56:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:56:57] Checking for apptainer binary...
[2025-10-13 02:56:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:56:57] Running /usr/bin/apptainer --version
[2025-10-13 02:56:57] apptainer version 1.4.1-1.1
[2025-10-13 02:56:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:56:57] madmaxA273
[2025-10-13 02:56:57] apptainer works
[2025-10-13 02:56:57] Set ATHENA_PROC_NUMBER=3
[2025-10-13 02:56:57] Set ATHENA_CORE_NUMBER=3
[2025-10-13 02:56:57] Starting ATLAS job with PandaID=6839990044
[2025-10-13 02:56:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 04:19:13]  *** The last 200 lines of the pilot log: ***
[2025-10-13 04:19:14] 2025-10-13 02:18:40,282 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 04:19:14] 2025-10-13 02:18:40,282 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 04:19:14] 2025-10-13 02:18:40,282 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 04:19:14] 2025-10-13 02:18:40,282 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 04:19:14] 2025-10-13 02:18:40,282 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 04:19:14] 2025-10-13 02:18:40,282 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 04:19:14] 2025-10-13 02:18:40,282 | INFO     | job 6839990044 has completed (purged errors)
[2025-10-13 04:19:14] 2025-10-13 02:18:40,283 | INFO     | overall cleanup function is called
[2025-10-13 04:19:14] 2025-10-13 02:18:41,289 | INFO     | --- collectZombieJob: --- 10, [3052761]
[2025-10-13 04:19:14] 2025-10-13 02:18:41,289 | INFO     | zombie collector waiting for pid 3052761
[2025-10-13 04:19:14] 2025-10-13 02:18:41,289 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 04:19:14] 2025-10-13 02:18:41,289 | INFO     | collected zombie processes
[2025-10-13 04:19:14] 2025-10-13 02:18:41,290 | INFO     | will attempt to kill all subprocesses of pid=3052761
[2025-10-13 04:19:14] 2025-10-13 02:18:41,332 | INFO     | process IDs to be killed: [3052761] (in reverse order)
[2025-10-13 04:19:14] 2025-10-13 02:18:41,354 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 04:19:14] 2025-10-13 02:18:41,355 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 04:19:14] 2025-10-13 02:18:41,356 | INFO     | did not find any defunct processes belonging to 3052761
[2025-10-13 04:19:14] 2025-10-13 02:18:41,357 | INFO     | did not find any defunct processes belonging to 3052761
[2025-10-13 04:19:14] 2025-10-13 02:18:41,357 | INFO     | ready for new job
[2025-10-13 04:19:14] 2025-10-13 02:18:41,357 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 04:19:14] 2025-10-13 02:18:41,358 | INFO     | ***************************************
[2025-10-13 04:19:14] 2025-10-13 02:18:41,358 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 04:19:14] 2025-10-13 02:18:41,358 | INFO     | ***************************************
[2025-10-13 04:19:14] 2025-10-13 02:18:41,358 | INFO     | 
[2025-10-13 04:19:14] 2025-10-13 02:18:41,358 | INFO     | architecture information:
[2025-10-13 04:19:14] 2025-10-13 02:18:41,358 | INFO     | executing command: cat /etc/os-release
[2025-10-13 04:19:14] 2025-10-13 02:18:41,367 | INFO     | cat /etc/os-release:
[2025-10-13 04:19:14] NAME="CentOS Linux"
[2025-10-13 04:19:14] VERSION="7 (Core)"
[2025-10-13 04:19:14] ID="centos"
[2025-10-13 04:19:14] ID_LIKE="rhel fedora"
[2025-10-13 04:19:14] VERSION_ID="7"
[2025-10-13 04:19:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 04:19:14] ANSI_COLOR="0;31"
[2025-10-13 04:19:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 04:19:14] HOME_URL="https://www.centos.org/"
[2025-10-13 04:19:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 04:19:14] 
[2025-10-13 04:19:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 04:19:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 04:19:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 04:19:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 04:19:14] 
[2025-10-13 04:19:14] 2025-10-13 02:18:41,367 | INFO     | ***************************************
[2025-10-13 04:19:14] 2025-10-13 02:18:41,870 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 04:19:14] 2025-10-13 02:18:41,882 | INFO     | sufficient remaining disk space (331286052864 B)
[2025-10-13 04:19:14] 2025-10-13 02:18:41,882 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 04:19:14] 2025-10-13 02:18:41,882 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 04:19:14] 2025-10-13 02:18:41,882 | INFO     | update_server=False
[2025-10-13 04:19:14] 2025-10-13 02:18:41,882 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 04:19:14] 2025-10-13 02:18:41,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:19:14] 2025-10-13 02:18:41,882 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 04:19:14] 2025-10-13 02:18:41,882 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 04:19:14] 2025-10-13 02:18:41,883 | INFO     | aborting loop
[2025-10-13 04:19:14] 2025-10-13 02:18:42,303 | INFO     | all payload control threads have been joined
[2025-10-13 04:19:14] 2025-10-13 02:18:42,888 | INFO     | [job] retrieve thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:42,888 | INFO     | [job] queue monitor thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:42,888 | INFO     | [job] job monitor thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:42,899 | INFO     | all data control threads have been joined
[2025-10-13 04:19:14] 2025-10-13 02:18:42,906 | INFO     | all job control threads have been joined
[2025-10-13 04:19:14] 2025-10-13 02:18:42,930 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 04:19:14] 2025-10-13 02:18:43,010 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:43,309 | INFO     | [payload] control thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:43,624 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:43,737 | INFO     | [data] copytool_in thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:43,905 | INFO     | [data] control thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:43,911 | INFO     | [job] control thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:44,255 | INFO     | [payload] validate_post thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:44,329 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:44,371 | INFO     | [job] validate thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:44,473 | INFO     | [payload] failed_post thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:44,936 | INFO     | [data] copytool_out thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:45,889 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:18:52,275 | INFO     | job.realtimelogging is not enabled
[2025-10-13 04:19:14] 2025-10-13 02:18:53,280 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 04:19:14] 2025-10-13 02:19:08,135 | INFO     | [monitor] cgroup control has ended
[2025-10-13 04:19:14] 2025-10-13 02:19:08,850 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139987416692544)>', '<ExcThread(monitor, started 139986934425344)>']
[2025-10-13 04:19:14] 2025-10-13 02:19:12,702 | INFO     | PID=3046335 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 04:19:14] 2025-10-13 02:19:12,702 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 04:19:14] 2025-10-13 02:19:12,702 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 04:19:14] 2025-10-13 02:19:12,702 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 04:19:14] 2025-10-13 02:19:12,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 04:19:14] 2025-10-13 02:19:12,702 | INFO     | [monitor] control thread has ended
[2025-10-13 04:19:14] 2025-10-13 02:19:13,876 | INFO     | all workflow threads have been joined
[2025-10-13 04:19:14] 2025-10-13 02:19:13,876 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 04:19:14] 2025-10-13 02:19:13,876 | INFO     | traces error code: 0
[2025-10-13 04:19:14] 2025-10-13 02:19:13,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 04:19:14] 2025-10-13 02:19:13,925 [wrapper] ==== pilot stdout END ====
[2025-10-13 04:19:14] 2025-10-13 02:19:13,927 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 04:19:14] 2025-10-13 02:19:13,930 [wrapper] pilotpid: 3046335
[2025-10-13 04:19:14] 2025-10-13 02:19:13,932 [wrapper] Pilot exit status: 0
[2025-10-13 04:19:14] 2025-10-13 02:19:13,939 [wrapper] pandaids: 6839990044
[2025-10-13 04:19:14] 2025-10-13 02:19:13,955 [wrapper] cleanup supervisor_pilot 3064751 3046336
[2025-10-13 04:19:14] 2025-10-13 02:19:13,957 [wrapper] Test setup, not cleaning
[2025-10-13 04:19:14] 2025-10-13 02:19:13,960 [wrapper] apfmon messages muted
[2025-10-13 04:19:14] 2025-10-13 02:19:13,962 [wrapper] ==== wrapper stdout END ====
[2025-10-13 04:19:14] 2025-10-13 02:19:13,964 [wrapper] ==== wrapper stderr END ====
[2025-10-13 04:19:14]  *** Error codes and diagnostics ***
[2025-10-13 04:19:14]     "exeErrorCode": 0,
[2025-10-13 04:19:14]     "exeErrorDiag": "",
[2025-10-13 04:19:14]     "pilotErrorCode": 0,
[2025-10-13 04:19:14]     "pilotErrorDiag": "",
[2025-10-13 04:19:14]  *** Listing of results directory ***
[2025-10-13 04:19:14] total 409168
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc    557409 Oct 12 15:05 pilot3.tar.gz
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc      5112 Oct 12 15:08 queuedata.json
[2025-10-13 04:19:14] -rwx------ 1 boinc boinc     36292 Oct 12 15:08 runpilot2-wrapper.sh
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 04:19:14] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:56 run_atlas
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:56 job.xml
[2025-10-13 04:19:14] -rw-r--r-- 2 boinc boinc 220224643 Oct 13 02:56 EVNT.46676267._003855.pool.root.1
[2025-10-13 04:19:14] -rw-r--r-- 2 boinc boinc    569681 Oct 13 02:56 input.tar.gz
[2025-10-13 04:19:14] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:56 start_atlas.sh
[2025-10-13 04:19:14] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:56 shared
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:56 boinc_setup_complete
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc      6443 Oct 13 02:56 init_data.xml
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:56 boinc_lockfile
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc      2550 Oct 13 02:56 pandaJob.out
[2025-10-13 04:19:14] -rw------- 1 boinc boinc    975603 Oct 13 02:57 agis_schedconf.cvmfs.json
[2025-10-13 04:19:14] -rw------- 1 boinc boinc   1560580 Oct 13 02:57 agis_ddmendpoints.agis.ALL.json
[2025-10-13 04:19:14] drwx------ 5 boinc boinc      4096 Oct 13 02:57 pilot3
[2025-10-13 04:19:14] -rw------- 1 boinc boinc 192905102 Oct 13 04:18 HITS.46676269._079202.pool.root.1
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc       529 Oct 13 04:18 boinc_task_state.xml
[2025-10-13 04:19:14] -rw------- 1 boinc boinc        95 Oct 13 04:18 pilot_heartbeat.json
[2025-10-13 04:19:14] -rw------- 1 boinc boinc      1022 Oct 13 04:18 memory_monitor_summary.json
[2025-10-13 04:19:14] -rw------- 1 boinc boinc    263567 Oct 13 04:18 log.46676269._079202.job.log.tgz.1
[2025-10-13 04:19:14] -rw------- 1 boinc boinc      7785 Oct 13 04:18 heartbeat.json
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc      8192 Oct 13 04:18 boinc_mmap_file
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc        27 Oct 13 04:18 wrapper_checkpoint.txt
[2025-10-13 04:19:14] -rw------- 1 boinc boinc      4824 Oct 13 04:19 pilotlog.txt
[2025-10-13 04:19:14] -rw------- 1 boinc boinc    720195 Oct 13 04:19 log.46676269._079202.job.log.1
[2025-10-13 04:19:14] -rw------- 1 boinc boinc       357 Oct 13 04:19 output.list
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc       620 Oct 13 04:19 runtime_log
[2025-10-13 04:19:14] -rw------- 1 boinc boinc   1003520 Oct 13 04:19 result.tar.gz
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc      8797 Oct 13 04:19 runtime_log.err
[2025-10-13 04:19:14] -rw------- 1 boinc boinc       662 Oct 13 04:19 CVaLDmzzAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm6xjNDmVXTRem.diag
[2025-10-13 04:19:14] -rw-r--r-- 1 boinc boinc     11517 Oct 13 04:19 stderr.txt
[2025-10-13 04:19:14] HITS file was successfully produced:
[2025-10-13 04:19:14] -rw------- 1 boinc boinc 192905102 Oct 13 04:18 shared/HITS.pool.root.1
[2025-10-13 04:19:14]  *** Contents of shared directory: ***
[2025-10-13 04:19:14] total 405012
[2025-10-13 04:19:14] -rw-r--r-- 2 boinc boinc 220224643 Oct 13 02:56 ATLAS.root_0
[2025-10-13 04:19:14] -rw-r--r-- 2 boinc boinc    569681 Oct 13 02:56 input.tar.gz
[2025-10-13 04:19:14] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:56 start_atlas.sh
[2025-10-13 04:19:14] -rw------- 1 boinc boinc 192905102 Oct 13 04:18 HITS.pool.root.1
[2025-10-13 04:19:14] -rw------- 1 boinc boinc   1003520 Oct 13 04:19 result.tar.gz
04:19:15 (3042622): run_atlas exited; CPU time 14064.042891
04:19:15 (3042622): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN