Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:28:06 (2491337): wrapper (7.7.26015): starting
11:28:06 (2491337): wrapper: running run_atlas (--nthreads 11)
[2025-10-12 11:28:06] Arguments: --nthreads 11
[2025-10-12 11:28:06] Threads: 11
[2025-10-12 11:28:06] Checking for CVMFS
[2025-10-12 11:28:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:28:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:28:06] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:28:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:28:07] 2.13.2.0 7513 77761 110184 151625 2 252 40397163 40960001 33067 16776704 0 466340201 99.756 291151242 46116 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:28:07] CVMFS is ok
[2025-10-12 11:28:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:28:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:28:07] Further information can be found at the LHC@home message board.
[2025-10-12 11:28:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:28:07] Checking for apptainer binary...
[2025-10-12 11:28:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:28:07] Running /usr/bin/apptainer --version
[2025-10-12 11:28:08] apptainer version 1.4.3-1.el9
[2025-10-12 11:28:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:28:08] c-208-40.aglt2.org
[2025-10-12 11:28:08] apptainer works
[2025-10-12 11:28:08] Set ATHENA_PROC_NUMBER=11
[2025-10-12 11:28:08] Set ATHENA_CORE_NUMBER=11
[2025-10-12 11:28:08] Starting ATLAS job with PandaID=6839989783
[2025-10-12 11:28:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:10:12]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:10:12] 2025-10-12 17:08:20,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:21,401 | INFO     | PID=2495659 has CPU usage=9.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:10:12] 2025-10-12 17:08:21,401 | INFO     | .. there are 35 such processes running
[2025-10-12 13:10:12] 2025-10-12 17:08:22,402 | INFO     | time since job start (5927s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:23,251 | INFO     | monitor loop #385: job 0:6839989783 is in state 'finished'
[2025-10-12 13:10:12] 2025-10-12 17:08:23,251 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:24,409 | INFO     | time since job start (5929s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:24,409 | INFO     | 5937s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 13:10:12] 2025-10-12 17:08:25,756 | INFO     | monitor loop #386: job 0:6839989783 is in state 'finished'
[2025-10-12 13:10:12] 2025-10-12 17:08:25,756 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:26,417 | INFO     | time since job start (5931s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:28,265 | INFO     | monitor loop #387: job 0:6839989783 is in state 'finished'
[2025-10-12 13:10:12] 2025-10-12 17:08:28,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:28,424 | INFO     | time since job start (5933s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:30,446 | INFO     | time since job start (5935s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:30,770 | INFO     | monitor loop #388: job 0:6839989783 is in state 'finished'
[2025-10-12 13:10:12] 2025-10-12 17:08:30,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:32,453 | INFO     | time since job start (5937s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:33,284 | INFO     | monitor loop #389: job 0:6839989783 is in state 'finished'
[2025-10-12 13:10:12] 2025-10-12 17:08:33,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:34,472 | INFO     | time since job start (5939s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:35,789 | INFO     | monitor loop #390: job 0:6839989783 is in state 'finished'
[2025-10-12 13:10:12] 2025-10-12 17:08:35,789 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:36,479 | INFO     | time since job start (5941s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:38,294 | INFO     | monitor loop #391: job 0:6839989783 is in state 'finished'
[2025-10-12 13:10:12] 2025-10-12 17:08:38,294 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:38,498 | INFO     | time since job start (5943s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:40,505 | INFO     | time since job start (5945s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:40,799 | INFO     | monitor loop #392: job 0:6839989783 is in state 'finished'
[2025-10-12 13:10:12] 2025-10-12 17:08:40,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:42,514 | INFO     | time since job start (5947s) is within the limit (172800.0s)
[2025-10-12 13:10:12] 2025-10-12 17:08:43,310 | INFO     | monitor loop #393: job 0:6839989783 is in state 'finished'
[2025-10-12 13:10:12] 2025-10-12 17:08:43,310 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 13:10:12] 2025-10-12 17:08:44,306 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 13:10:12] 2025-10-12 17:08:44,406 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3774.9863046875007
[2025-10-12 13:10:12] 2025-10-12 17:08:44,545 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6839989783/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 13:10:12] 2025-10-12 17:08:44,546 | INFO     | extracted standard info from prmon json
[2025-10-12 13:10:12] 2025-10-12 17:08:44,546 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 13:10:12] 2025-10-12 17:08:44,546 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 13:10:12] 2025-10-12 17:08:44,546 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:10:12] 2025-10-12 17:08:44,546 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:10:12] 2025-10-12 17:08:44,547 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:10:12] 2025-10-12 17:08:44,547 | INFO     | sum of square deviations: 204155293.81609204
[2025-10-12 13:10:12] 2025-10-12 17:08:44,548 | INFO     | sum of deviations: 2873677957.551721
[2025-10-12 13:10:12] 2025-10-12 17:08:44,548 | INFO     | mean x: 1760286081.045977
[2025-10-12 13:10:12] 2025-10-12 17:08:44,548 | INFO     | mean y: 2652733.8620689656
[2025-10-12 13:10:12] 2025-10-12 17:08:44,548 | INFO     | -- intersect: -24775031035.84581
[2025-10-12 13:10:12] 2025-10-12 17:08:44,548 | INFO     | intersect: -24775031035.84581
[2025-10-12 13:10:12] 2025-10-12 17:08:44,572 | INFO     | chi2: 0.29528002118464325
[2025-10-12 13:10:12] 2025-10-12 17:08:44,572 | INFO     | -- intersect: -24775031035.84581
[2025-10-12 13:10:12] 2025-10-12 17:08:44,572 | INFO     | current memory leak: 14.08 B/s (using 87 data points, chi2=0.30)
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | could have reported an average CPU frequency of 3785 MHz (7 samples)
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | ..............................
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | . Timing measurements:
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | . get job = 0 s
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | . initial setup = 7 s
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | . payload setup = 62 s
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | . stage-in = 0 s
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | . payload execution = 5765 s
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | . stage-out = 2 s
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | . log creation = 0 s
[2025-10-12 13:10:12] 2025-10-12 17:08:44,573 | INFO     | ..............................
[2025-10-12 13:10:12] 2025-10-12 17:08:44,945 | INFO     | 
[2025-10-12 13:10:12] 2025-10-12 17:08:44,945 | INFO     | job summary report
[2025-10-12 13:10:12] 2025-10-12 17:08:44,945 | INFO     | --------------------------------------------------
[2025-10-12 13:10:12] 2025-10-12 17:08:44,945 | INFO     | PanDA job id: 6839989783
[2025-10-12 13:10:12] 2025-10-12 17:08:44,945 | INFO     | task id: 46676269
[2025-10-12 13:10:12] 2025-10-12 17:08:44,945 | INFO     | errors: (none)
[2025-10-12 13:10:12] 2025-10-12 17:08:44,945 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:10:12] 2025-10-12 17:08:44,945 | INFO     | pilot state: finished 
[2025-10-12 13:10:12] 2025-10-12 17:08:44,945 | INFO     | transexitcode: 0
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | exeerrorcode: 0
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | exeerrordiag: 
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | exitcode: 0
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | exitmsg: OK
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | cpuconsumptiontime: 24437 s
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | nevents: 400
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | neventsw: 0
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | pid: 2509909
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | pgrp: 2509909
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | corecount: 11
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | event service: False
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 23: 2348913, 33: 2348941, 39: 2349259, 44: 2349415, 5832: 2376092, 5835: 2385146, 5870: 2385284}
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | --------------------------------------------------
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | 
[2025-10-12 13:10:12] 2025-10-12 17:08:44,946 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 13:10:12] 2025-10-12 17:08:45,216 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,216 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | job 6839989783 has completed (purged errors)
[2025-10-12 13:10:12] 2025-10-12 17:08:45,217 | INFO     | overall cleanup function is called
[2025-10-12 13:10:12] 2025-10-12 17:08:46,287 | INFO     | --- collectZombieJob: --- 10, [2509909]
[2025-10-12 13:10:12] 2025-10-12 17:08:46,287 | INFO     | zombie collector waiting for pid 2509909
[2025-10-12 13:10:12] 2025-10-12 17:08:46,287 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:10:12] 2025-10-12 17:08:46,287 | INFO     | collected zombie processes
[2025-10-12 13:10:12] 2025-10-12 17:08:46,287 | INFO     | will attempt to kill all subprocesses of pid=2509909
[2025-10-12 13:10:12] 2025-10-12 17:08:46,461 | INFO     | PID=2495659 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:10:12] 2025-10-12 17:08:46,461 | INFO     | .. there are 35 such processes running
[2025-10-12 13:10:12] 2025-10-12 17:08:47,791 | INFO     | process IDs to be killed: [2509909] (in reverse order)
[2025-10-12 13:10:12] 2025-10-12 17:08:48,329 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:10:12] 2025-10-12 17:08:48,329 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:10:12] 2025-10-12 17:08:48,422 | INFO     | did not find any defunct processes belonging to 2509909
[2025-10-12 13:10:12] 2025-10-12 17:08:48,532 | INFO     | did not find any defunct processes belonging to 2509909
[2025-10-12 13:10:12] 2025-10-12 17:08:48,532 | INFO     | ready for new job
[2025-10-12 13:10:12] 2025-10-12 17:08:48,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:10:12] 2025-10-12 17:08:48,533 | INFO     | ***************************************
[2025-10-12 13:10:12] 2025-10-12 17:08:48,534 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:10:12] 2025-10-12 17:08:48,534 | INFO     | ***************************************
[2025-10-12 13:10:12] 2025-10-12 17:08:48,534 | INFO     | 
[2025-10-12 13:10:12] 2025-10-12 17:08:48,570 | INFO     | architecture information:
[2025-10-12 13:10:12] 2025-10-12 17:08:48,574 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:10:12] 2025-10-12 17:08:48,645 | INFO     | cat /etc/os-release:
[2025-10-12 13:10:12] NAME="CentOS Linux"
[2025-10-12 13:10:12] VERSION="7 (Core)"
[2025-10-12 13:10:12] ID="centos"
[2025-10-12 13:10:12] ID_LIKE="rhel fedora"
[2025-10-12 13:10:12] VERSION_ID="7"
[2025-10-12 13:10:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:10:12] ANSI_COLOR="0;31"
[2025-10-12 13:10:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:10:12] HOME_URL="https://www.centos.org/"
[2025-10-12 13:10:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:10:12] 
[2025-10-12 13:10:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:10:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:10:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:10:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:10:12] 
[2025-10-12 13:10:12] 2025-10-12 17:08:48,645 | INFO     | ***************************************
[2025-10-12 13:10:12] 2025-10-12 17:08:49,149 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 13:10:12] 2025-10-12 17:08:49,231 | INFO     | sufficient remaining disk space (170064347136 B)
[2025-10-12 13:10:12] 2025-10-12 17:08:49,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:10:12] 2025-10-12 17:08:49,232 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:10:12] 2025-10-12 17:08:49,232 | INFO     | update_server=False
[2025-10-12 13:10:12] 2025-10-12 17:08:49,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:10:12] 2025-10-12 17:08:49,386 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:10:12] 2025-10-12 17:08:49,386 | INFO     | aborting loop
[2025-10-12 13:10:12] 2025-10-12 17:08:49,830 | INFO     | all data control threads have been joined
[2025-10-12 13:10:12] 2025-10-12 17:08:49,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:10:12] 2025-10-12 17:08:50,139 | INFO     | all payload control threads have been joined
[2025-10-12 13:10:12] 2025-10-12 17:08:50,238 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:50,248 | INFO     | all job control threads have been joined
[2025-10-12 13:10:12] 2025-10-12 17:08:50,338 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:50,392 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:50,524 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:10:12] 2025-10-12 17:08:50,642 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:50,836 | INFO     | [data] control thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:50,850 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:50,978 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:51,145 | INFO     | [payload] control thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:51,254 | INFO     | [job] control thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:51,405 | INFO     | [job] validate thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:51,447 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:51,560 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:51,786 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:52,220 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:10:12] 2025-10-12 17:08:52,531 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:08:56,229 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:09:00,112 | INFO     | job.realtimelogging is not enabled
[2025-10-12 13:10:12] 2025-10-12 17:09:01,118 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:10:12] 2025-10-12 17:09:20,503 | INFO     | PID=2495659 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 13:10:12] 2025-10-12 17:09:20,504 | INFO     | .. there are 35 such processes running
[2025-10-12 13:10:12] 2025-10-12 17:09:20,504 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:10:12] 2025-10-12 17:09:20,504 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:10:12] 2025-10-12 17:09:20,504 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:10:12] 2025-10-12 17:09:44,948 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:10:12] 2025-10-12 17:09:45,904 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139795317352256)>', '<ExcThread(monitor, started 139794575243008)>']
[2025-10-12 13:10:12] 2025-10-12 17:09:46,669 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:10:12] 2025-10-12 17:09:46,669 | INFO     | [monitor] control thread has ended
[2025-10-12 13:10:12] 2025-10-12 17:09:50,930 | INFO     | all workflow threads have been joined
[2025-10-12 13:10:12] 2025-10-12 17:09:50,930 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:10:12] 2025-10-12 17:09:50,930 | INFO     | traces error code: 0
[2025-10-12 13:10:12] 2025-10-12 17:09:50,930 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:10:12] 2025-10-12 17:09:51,063 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:10:12] 2025-10-12 17:09:51,098 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:10:12] 2025-10-12 17:09:51,137 [wrapper] pilotpid: 2495659
[2025-10-12 13:10:12] 2025-10-12 17:09:51,147 [wrapper] Pilot exit status: 0
[2025-10-12 13:10:12] 2025-10-12 17:09:51,347 [wrapper] pandaids: 6839989783
[2025-10-12 13:10:12] 2025-10-12 17:09:51,898 [wrapper] cleanup supervisor_pilot 2812730 2495660
[2025-10-12 13:10:12] 2025-10-12 17:09:51,915 [wrapper] Test setup, not cleaning
[2025-10-12 13:10:12] 2025-10-12 17:09:51,947 [wrapper] apfmon messages muted
[2025-10-12 13:10:12] 2025-10-12 17:09:51,980 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:10:12] 2025-10-12 17:09:52,022 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:10:12]  *** Error codes and diagnostics ***
[2025-10-12 13:10:12]     "exeErrorCode": 0,
[2025-10-12 13:10:12]     "exeErrorDiag": "",
[2025-10-12 13:10:12]     "pilotErrorCode": 0,
[2025-10-12 13:10:12]     "pilotErrorDiag": "",
[2025-10-12 13:10:12]  *** Listing of results directory ***
[2025-10-12 13:10:12] total 416648
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 09:05 pilot3.tar.gz
[2025-10-12 13:10:12] -rwx------. 1 boincer umatlas     36292 Oct 12 09:08 runpilot2-wrapper.sh
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 09:08 queuedata.json
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas       100 Oct 12 11:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:10:12] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 11:28 run_atlas
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas       105 Oct 12 11:28 job.xml
[2025-10-12 13:10:12] -rw-r--r--. 2 boincer umatlas 223470666 Oct 12 11:28 EVNT.46676267._003852.pool.root.1
[2025-10-12 13:10:12] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 11:28 shared
[2025-10-12 13:10:12] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 11:28 input.tar.gz
[2025-10-12 13:10:12] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:28 start_atlas.sh
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas         0 Oct 12 11:28 boinc_lockfile
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 11:28 pandaJob.out
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas    975528 Oct 12 11:29 agis_schedconf.cvmfs.json
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas   1560580 Oct 12 11:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:10:12] drwx------. 5 boincer umatlas      4096 Oct 12 11:29 pilot3
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas      7172 Oct 12 13:01 init_data.xml
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas 196980346 Oct 12 13:07 HITS.46676269._079115.pool.root.1
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas       529 Oct 12 13:07 boinc_task_state.xml
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas      1042 Oct 12 13:08 memory_monitor_summary.json
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas    380556 Oct 12 13:08 log.46676269._079115.job.log.tgz.1
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas        95 Oct 12 13:08 pilot_heartbeat.json
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas      7802 Oct 12 13:08 heartbeat.json
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas      4897 Oct 12 13:09 pilotlog.txt
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas    769236 Oct 12 13:09 log.46676269._079115.job.log.1
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas       357 Oct 12 13:09 output.list
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas       620 Oct 12 13:09 runtime_log
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas   1167360 Oct 12 13:09 result.tar.gz
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas      8705 Oct 12 13:09 runtime_log.err
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas       655 Oct 12 13:09 eg7KDmOzAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmHxjNDm0bPCmn.diag
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 13:10 boinc_mmap_file
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas        27 Oct 12 13:10 wrapper_checkpoint.txt
[2025-10-12 13:10:12] -rw-r--r--. 1 boincer umatlas     22425 Oct 12 13:10 stderr.txt
[2025-10-12 13:10:12] HITS file was successfully produced:
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas 196980346 Oct 12 13:07 shared/HITS.pool.root.1
[2025-10-12 13:10:12]  *** Contents of shared directory: ***
[2025-10-12 13:10:12] total 412320
[2025-10-12 13:10:12] -rw-r--r--. 2 boincer umatlas 223470666 Oct 12 11:28 ATLAS.root_0
[2025-10-12 13:10:12] -rw-r--r--. 2 boincer umatlas    569674 Oct 12 11:28 input.tar.gz
[2025-10-12 13:10:12] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:28 start_atlas.sh
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas 196980346 Oct 12 13:07 HITS.pool.root.1
[2025-10-12 13:10:12] -rw-------. 1 boincer umatlas   1167360 Oct 12 13:09 result.tar.gz
13:10:14 (2491337): run_atlas exited; CPU time 24593.075072
13:10:14 (2491337): called boinc_finish(0)

</stderr_txt>
]]>

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