Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:27:58 (2994955): wrapper (7.7.26015): starting
01:27:58 (2994955): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 01:27:58] Arguments: --nthreads 3
[2025-10-13 01:27:58] Threads: 3
[2025-10-13 01:27:58] Checking for CVMFS
[2025-10-13 01:27:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:27:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:27:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:27:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:27:58] 2.9.2.0 1545274 4981 86348 151641 3 57 31356289 36864000 0 130560 0 3810374 99.991 171976 975 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 01:27:58] CVMFS is ok
[2025-10-13 01:27:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:27:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:27:58] Further information can be found at the LHC@home message board.
[2025-10-13 01:27:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:27:58] Checking for apptainer binary...
[2025-10-13 01:27:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:27:58] Running /usr/bin/apptainer --version
[2025-10-13 01:27:58] apptainer version 1.4.1-1.1
[2025-10-13 01:27:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:27:58] atlasA223
[2025-10-13 01:27:58] apptainer works
[2025-10-13 01:27:58] Set ATHENA_PROC_NUMBER=3
[2025-10-13 01:27:58] Set ATHENA_CORE_NUMBER=3
[2025-10-13 01:27:58] Starting ATLAS job with PandaID=6839659787
[2025-10-13 01:27:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:56:26]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:56:26] 2025-10-13 00:55:55,078 | INFO     | overall cleanup function is called
[2025-10-13 02:56:26] 2025-10-13 00:55:56,084 | INFO     | --- collectZombieJob: --- 10, [3005113]
[2025-10-13 02:56:26] 2025-10-13 00:55:56,085 | INFO     | zombie collector waiting for pid 3005113
[2025-10-13 02:56:26] 2025-10-13 00:55:56,085 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:56:26] 2025-10-13 00:55:56,085 | INFO     | collected zombie processes
[2025-10-13 02:56:26] 2025-10-13 00:55:56,085 | INFO     | will attempt to kill all subprocesses of pid=3005113
[2025-10-13 02:56:26] 2025-10-13 00:55:56,126 | INFO     | process IDs to be killed: [3005113] (in reverse order)
[2025-10-13 02:56:26] 2025-10-13 00:55:56,152 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:56:26] 2025-10-13 00:55:56,152 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:56:26] 2025-10-13 00:55:56,153 | INFO     | did not find any defunct processes belonging to 3005113
[2025-10-13 02:56:26] 2025-10-13 00:55:56,154 | INFO     | did not find any defunct processes belonging to 3005113
[2025-10-13 02:56:26] 2025-10-13 00:55:56,154 | INFO     | ready for new job
[2025-10-13 02:56:26] 2025-10-13 00:55:56,154 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:56:26] 2025-10-13 00:55:56,155 | INFO     | ***************************************
[2025-10-13 02:56:26] 2025-10-13 00:55:56,155 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:56:26] 2025-10-13 00:55:56,155 | INFO     | ***************************************
[2025-10-13 02:56:26] 2025-10-13 00:55:56,155 | INFO     | 
[2025-10-13 02:56:26] 2025-10-13 00:55:56,156 | INFO     | architecture information:
[2025-10-13 02:56:26] 2025-10-13 00:55:56,156 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:56:26] 2025-10-13 00:55:56,165 | INFO     | cat /etc/os-release:
[2025-10-13 02:56:26] NAME="CentOS Linux"
[2025-10-13 02:56:26] VERSION="7 (Core)"
[2025-10-13 02:56:26] ID="centos"
[2025-10-13 02:56:26] ID_LIKE="rhel fedora"
[2025-10-13 02:56:26] VERSION_ID="7"
[2025-10-13 02:56:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:56:26] ANSI_COLOR="0;31"
[2025-10-13 02:56:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:56:26] HOME_URL="https://www.centos.org/"
[2025-10-13 02:56:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:56:26] 
[2025-10-13 02:56:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:56:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:56:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:56:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:56:26] 
[2025-10-13 02:56:26] 2025-10-13 00:55:56,165 | INFO     | ***************************************
[2025-10-13 02:56:26] 2025-10-13 00:55:56,668 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 02:56:26] 2025-10-13 00:55:56,682 | INFO     | sufficient remaining disk space (373491236864 B)
[2025-10-13 02:56:26] 2025-10-13 00:55:56,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:56:26] 2025-10-13 00:55:56,682 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:56:26] 2025-10-13 00:55:56,682 | INFO     | update_server=False
[2025-10-13 02:56:26] 2025-10-13 00:55:56,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:56:26] 2025-10-13 00:55:56,682 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:56:26] 2025-10-13 00:55:56,865 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:56:26] 2025-10-13 00:55:57,084 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 02:56:26] 2025-10-13 00:55:57,084 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 02:56:26] 2025-10-13 00:55:57,084 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:56:26] 2025-10-13 00:55:57,085 | INFO     | will abort loop
[2025-10-13 02:56:26] 2025-10-13 00:55:57,090 | INFO     | all job control threads have been joined
[2025-10-13 02:56:26] 2025-10-13 00:55:57,176 | INFO     | all data control threads have been joined
[2025-10-13 02:56:26] 2025-10-13 00:55:57,395 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:56:26] 2025-10-13 00:55:57,688 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:57,688 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:57,779 | INFO     | all payload control threads have been joined
[2025-10-13 02:56:26] 2025-10-13 00:55:58,090 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,090 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,096 | INFO     | [job] control thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,181 | INFO     | [data] control thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,243 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,315 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,598 | INFO     | [job] validate thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,670 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,733 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,765 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:58,785 | INFO     | [payload] control thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:59,075 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:55:59,398 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:56:00,872 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:56:26] 2025-10-13 00:56:10,822 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:56:26] 2025-10-13 00:56:11,065 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139697841362752)>', '<ExcThread(monitor, started 139697351284480)>']
[2025-10-13 02:56:26] 2025-10-13 00:56:16,086 | INFO     | all workflow threads have been joined
[2025-10-13 02:56:26] 2025-10-13 00:56:16,086 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:56:26] 2025-10-13 00:56:16,087 | INFO     | traces error code: 0
[2025-10-13 02:56:26] 2025-10-13 00:56:16,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:56:26] 2025-10-13 00:56:26,860 | INFO     | PID=2998673 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 02:56:26] 2025-10-13 00:56:26,860 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:56:26] 2025-10-13 00:56:26,860 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:56:26] 2025-10-13 00:56:26,860 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:56:26] 2025-10-13 00:56:26,860 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:56:26] 2025-10-13 00:56:26,860 | INFO     | [monitor] control thread has ended
[2025-10-13 02:56:26] 2025-10-13 00:56:26,908 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:56:26] 2025-10-13 00:56:26,910 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:56:26] 2025-10-13 00:56:26,913 [wrapper] pilotpid: 2998673
[2025-10-13 02:56:26] 2025-10-13 00:56:26,916 [wrapper] Pilot exit status: 0
[2025-10-13 02:56:26] 2025-10-13 00:56:26,923 [wrapper] pandaids: 6839659787
[2025-10-13 02:56:26] 2025-10-13 00:56:26,941 [wrapper] cleanup supervisor_pilot 3016974 2998674
[2025-10-13 02:56:26] 2025-10-13 00:56:26,943 [wrapper] Test setup, not cleaning
[2025-10-13 02:56:26] 2025-10-13 00:56:26,946 [wrapper] apfmon messages muted
[2025-10-13 02:56:26] 2025-10-13 00:56:26,948 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:56:26] 2025-10-13 00:56:26,951 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:56:26]  *** Error codes and diagnostics ***
[2025-10-13 02:56:26]     "exeErrorCode": 0,
[2025-10-13 02:56:26]     "exeErrorDiag": "",
[2025-10-13 02:56:26]     "pilotErrorCode": 0,
[2025-10-13 02:56:26]     "pilotErrorDiag": "",
[2025-10-13 02:56:26]  *** Listing of results directory ***
[2025-10-13 02:56:26] total 417476
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:54 pilot3.tar.gz
[2025-10-13 02:56:26] -rwx------ 1 boinc boinc     36292 Oct 12 09:46 runpilot2-wrapper.sh
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc      5112 Oct 12 09:46 queuedata.json
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc       100 Oct 13 01:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:56:26] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 01:27 run_atlas
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc       105 Oct 13 01:27 job.xml
[2025-10-13 02:56:26] -rw-r--r-- 2 boinc boinc 223396460 Oct 13 01:27 EVNT.46676267._003512.pool.root.1
[2025-10-13 02:56:26] -rw-r--r-- 2 boinc boinc    569679 Oct 13 01:27 input.tar.gz
[2025-10-13 02:56:26] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:27 start_atlas.sh
[2025-10-13 02:56:26] drwxrwx--x 2 boinc boinc      4096 Oct 13 01:27 shared
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:27 boinc_setup_complete
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc      6448 Oct 13 01:27 init_data.xml
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:27 boinc_lockfile
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc      2549 Oct 13 01:27 pandaJob.out
[2025-10-13 02:56:26] -rw------- 1 boinc boinc    975603 Oct 13 01:28 agis_schedconf.cvmfs.json
[2025-10-13 02:56:26] -rw------- 1 boinc boinc   1560580 Oct 13 01:28 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:56:26] drwx------ 5 boinc boinc      4096 Oct 13 01:28 pilot3
[2025-10-13 02:56:26] -rw------- 1 boinc boinc 198176419 Oct 13 02:55 HITS.46676269._073766.pool.root.1
[2025-10-13 02:56:26] -rw------- 1 boinc boinc        95 Oct 13 02:55 pilot_heartbeat.json
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc       529 Oct 13 02:55 boinc_task_state.xml
[2025-10-13 02:56:26] -rw------- 1 boinc boinc      1017 Oct 13 02:55 memory_monitor_summary.json
[2025-10-13 02:56:26] -rw------- 1 boinc boinc    245787 Oct 13 02:55 log.46676269._073766.job.log.tgz.1
[2025-10-13 02:56:26] -rw------- 1 boinc boinc      7760 Oct 13 02:55 heartbeat.json
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc      8192 Oct 13 02:56 boinc_mmap_file
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc        27 Oct 13 02:56 wrapper_checkpoint.txt
[2025-10-13 02:56:26] -rw------- 1 boinc boinc       747 Oct 13 02:56 pilotlog.txt
[2025-10-13 02:56:26] -rw------- 1 boinc boinc    769936 Oct 13 02:56 log.46676269._073766.job.log.1
[2025-10-13 02:56:26] -rw------- 1 boinc boinc       357 Oct 13 02:56 output.list
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc       620 Oct 13 02:56 runtime_log
[2025-10-13 02:56:26] -rw------- 1 boinc boinc   1034240 Oct 13 02:56 result.tar.gz
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc      8792 Oct 13 02:56 runtime_log.err
[2025-10-13 02:56:26] -rw------- 1 boinc boinc       661 Oct 13 02:56 UQNNDmJy5R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmv2iNDm2QlBym.diag
[2025-10-13 02:56:26] -rw-r--r-- 1 boinc boinc     10940 Oct 13 02:56 stderr.txt
[2025-10-13 02:56:27] HITS file was successfully produced:
[2025-10-13 02:56:27] -rw------- 1 boinc boinc 198176419 Oct 13 02:55 shared/HITS.pool.root.1
[2025-10-13 02:56:27]  *** Contents of shared directory: ***
[2025-10-13 02:56:27] total 413292
[2025-10-13 02:56:27] -rw-r--r-- 2 boinc boinc 223396460 Oct 13 01:27 ATLAS.root_0
[2025-10-13 02:56:27] -rw-r--r-- 2 boinc boinc    569679 Oct 13 01:27 input.tar.gz
[2025-10-13 02:56:27] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:27 start_atlas.sh
[2025-10-13 02:56:27] -rw------- 1 boinc boinc 198176419 Oct 13 02:55 HITS.pool.root.1
[2025-10-13 02:56:27] -rw------- 1 boinc boinc   1034240 Oct 13 02:56 result.tar.gz
02:56:28 (2994955): run_atlas exited; CPU time 15171.797194
02:56:28 (2994955): called boinc_finish(0)

</stderr_txt>
]]>

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