Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:31:54 (7160): wrapper (7.7.26015): starting
10:31:54 (7160): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 10:31:54] Arguments: --nthreads 12
[2025-10-12 10:31:54] Threads: 12
[2025-10-12 10:31:54] Checking for CVMFS
[2025-10-12 10:31:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:31:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:31:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:31:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:31:55] 2.11.2.0 30551 52946 87664 151623 3 59 14255004 20275200 1 130560 0 30574547 99.957 2400275 39798 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:31:55] CVMFS is ok
[2025-10-12 10:31:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:31:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:31:55] Further information can be found at the LHC@home message board.
[2025-10-12 10:31:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:31:55] Checking for apptainer binary...
[2025-10-12 10:31:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:31:55] Running /usr/bin/apptainer --version
[2025-10-12 10:31:55] apptainer version 1.3.2-1.el7
[2025-10-12 10:31:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:31:56] c-205-16.aglt2.org
[2025-10-12 10:31:56] apptainer works
[2025-10-12 10:31:56] Set ATHENA_PROC_NUMBER=12
[2025-10-12 10:31:56] Set ATHENA_CORE_NUMBER=12
[2025-10-12 10:31:56] Starting ATLAS job with PandaID=6829167773
[2025-10-12 10:31:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:35:42]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:35:42]  replicas=None
[2025-10-12 11:35:42]  scope=mc23_13p6TeV
[2025-10-12 11:35:42]  status=None
[2025-10-12 11:35:42]  status_code=0
[2025-10-12 11:35:42]  storage_token=
[2025-10-12 11:35:42]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6829167773/log.46376905._051471.job.log.tgz.1
[2025-10-12 11:35:42]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/15/log.46376905._051471.job.log.tgz.1
[2025-10-12 11:35:42]  workdir=None
[2025-10-12 11:35:42] ]
[2025-10-12 11:35:42] 2025-10-12 15:35:04,528 | INFO     | time since job start (3773s) is within the limit (172800.0s)
[2025-10-12 11:35:42] 2025-10-12 15:35:04,529 | INFO     | 3775s have passed since pilot start - server update state is 'RUNNING'
[2025-10-12 11:35:42] 2025-10-12 15:35:04,548 | INFO     | transferring file log.46376905._051471.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6829167773/log.46376905._051471.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 11:35:42] 2025-10-12 15:35:04,548 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6829167773/log.46376905._051471.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._051471.job
[2025-10-12 11:35:42] 2025-10-12 15:35:04,571 | INFO     | adding to output.list: log.46376905._051471.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/15/log.46376905._051471.job.log.tg
[2025-10-12 11:35:42] 2025-10-12 15:35:04,572 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 11:35:42] 2025-10-12 15:35:04,572 | INFO     | summary of transferred files:
[2025-10-12 11:35:42] 2025-10-12 15:35:04,572 | INFO     |  -- lfn=log.46376905._051471.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 11:35:42] 2025-10-12 15:35:04,573 | INFO     | stage-out finished correctly
[2025-10-12 11:35:42] 2025-10-12 15:35:04,656 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:35:42] 2025-10-12 15:35:04,736 | INFO     | job 6829167773 has state=finished
[2025-10-12 11:35:42] 2025-10-12 15:35:04,736 | INFO     | preparing for final server update for job 6829167773 in state='finished'
[2025-10-12 11:35:42] 2025-10-12 15:35:04,737 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:35:42] 2025-10-12 15:35:04,737 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:35:42] 2025-10-12 15:35:04,737 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:35:42] 2025-10-12 15:35:04,737 | INFO     | job 6829167773 has finished - writing final server update
[2025-10-12 11:35:42] 2025-10-12 15:35:04,738 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:35:42] 2025-10-12 15:35:04,738 | INFO     | executing command: lscpu
[2025-10-12 11:35:42] 2025-10-12 15:35:04,766 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:35:42] 2025-10-12 15:35:05,984 | WARNING  | process 17395 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 11:35:42] 2025-10-12 15:35:05,984 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6829167773/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:35:42] 2025-10-12 15:35:06,079 | INFO     | number of running child processes to parent process 17395: 1
[2025-10-12 11:35:42] 2025-10-12 15:35:06,079 | INFO     | maximum number of monitored processes: 6
[2025-10-12 11:35:42] 2025-10-12 15:35:06,535 | INFO     | time since job start (3775s) is within the limit (172800.0s)
[2025-10-12 11:35:42] 2025-10-12 15:35:08,540 | INFO     | time since job start (3777s) is within the limit (172800.0s)
[2025-10-12 11:35:42] 2025-10-12 15:35:08,582 | INFO     | monitor loop #284: job 0:6829167773 is in state 'finished'
[2025-10-12 11:35:42] 2025-10-12 15:35:08,582 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:35:42] 2025-10-12 15:35:09,535 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 11:35:42] 2025-10-12 15:35:09,538 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-10-12 11:35:42] 2025-10-12 15:35:09,541 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6829167773/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:35:42] 2025-10-12 15:35:09,542 | INFO     | extracted standard info from prmon json
[2025-10-12 11:35:42] 2025-10-12 15:35:09,542 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:35:42] 2025-10-12 15:35:09,542 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:35:42] 2025-10-12 15:35:09,543 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:35:42] 2025-10-12 15:35:09,543 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:35:42] 2025-10-12 15:35:09,544 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:35:42] 2025-10-12 15:35:09,544 | INFO     | sum of square deviations: 51573060.0
[2025-10-12 11:35:42] 2025-10-12 15:35:09,545 | INFO     | sum of deviations: -4884224128.0
[2025-10-12 11:35:42] 2025-10-12 15:35:09,545 | INFO     | mean x: 1760281512.0
[2025-10-12 11:35:42] 2025-10-12 15:35:09,545 | INFO     | mean y: 2864253.036363636
[2025-10-12 11:35:42] 2025-10-12 15:35:09,545 | INFO     | -- intersect: 166710238858.74567
[2025-10-12 11:35:42] 2025-10-12 15:35:09,545 | INFO     | intersect: 166710238858.74567
[2025-10-12 11:35:42] 2025-10-12 15:35:09,546 | INFO     | chi2: 0.05516377830528191
[2025-10-12 11:35:42] 2025-10-12 15:35:09,546 | INFO     | -- intersect: 166710238858.74567
[2025-10-12 11:35:42] 2025-10-12 15:35:09,546 | INFO     | current memory leak: -94.70 B/s (using 55 data points, chi2=0.06)
[2025-10-12 11:35:42] 2025-10-12 15:35:09,546 | INFO     | could have reported an average CPU frequency of 1987 MHz (6 samples)
[2025-10-12 11:35:42] 2025-10-12 15:35:09,546 | INFO     | ..............................
[2025-10-12 11:35:42] 2025-10-12 15:35:09,547 | INFO     | . Timing measurements:
[2025-10-12 11:35:42] 2025-10-12 15:35:09,547 | INFO     | . get job = 0 s
[2025-10-12 11:35:42] 2025-10-12 15:35:09,547 | INFO     | . initial setup = 2 s
[2025-10-12 11:35:42] 2025-10-12 15:35:09,547 | INFO     | . payload setup = 7 s
[2025-10-12 11:35:42] 2025-10-12 15:35:09,547 | INFO     | . stage-in = 0 s
[2025-10-12 11:35:42] 2025-10-12 15:35:09,547 | INFO     | . payload execution = 3743 s
[2025-10-12 11:35:42] 2025-10-12 15:35:09,547 | INFO     | . stage-out = 1 s
[2025-10-12 11:35:42] 2025-10-12 15:35:09,547 | INFO     | . log creation = 0 s
[2025-10-12 11:35:42] 2025-10-12 15:35:09,547 | INFO     | ..............................
[2025-10-12 11:35:42] 2025-10-12 15:35:09,629 | INFO     | 
[2025-10-12 11:35:42] 2025-10-12 15:35:09,629 | INFO     | job summary report
[2025-10-12 11:35:42] 2025-10-12 15:35:09,629 | INFO     | --------------------------------------------------
[2025-10-12 11:35:42] 2025-10-12 15:35:09,629 | INFO     | PanDA job id: 6829167773
[2025-10-12 11:35:42] 2025-10-12 15:35:09,629 | INFO     | task id: 46376905
[2025-10-12 11:35:42] 2025-10-12 15:35:09,629 | INFO     | errors: (none)
[2025-10-12 11:35:42] 2025-10-12 15:35:09,629 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:35:42] 2025-10-12 15:35:09,630 | INFO     | pilot state: finished 
[2025-10-12 11:35:42] 2025-10-12 15:35:09,630 | INFO     | transexitcode: 0
[2025-10-12 11:35:42] 2025-10-12 15:35:09,630 | INFO     | exeerrorcode: 0
[2025-10-12 11:35:42] 2025-10-12 15:35:09,630 | INFO     | exeerrordiag: 
[2025-10-12 11:35:42] 2025-10-12 15:35:09,630 | INFO     | exitcode: 0
[2025-10-12 11:35:42] 2025-10-12 15:35:09,630 | INFO     | exitmsg: OK
[2025-10-12 11:35:42] 2025-10-12 15:35:09,630 | INFO     | cpuconsumptiontime: 40357 s
[2025-10-12 11:35:42] 2025-10-12 15:35:09,630 | INFO     | nevents: 400
[2025-10-12 11:35:42] 2025-10-12 15:35:09,630 | INFO     | neventsw: 0
[2025-10-12 11:35:42] 2025-10-12 15:35:09,631 | INFO     | pid: 17395
[2025-10-12 11:35:42] 2025-10-12 15:35:09,631 | INFO     | pgrp: 17395
[2025-10-12 11:35:42] 2025-10-12 15:35:09,631 | INFO     | corecount: 12
[2025-10-12 11:35:42] 2025-10-12 15:35:09,631 | INFO     | event service: False
[2025-10-12 11:35:42] 2025-10-12 15:35:09,631 | INFO     | sizes: {0: 2348816, 1: 2348816, 5: 2349106, 11: 2349162, 3754: 2374886, 3757: 2384068, 3762: 2384206}
[2025-10-12 11:35:42] 2025-10-12 15:35:09,631 | INFO     | --------------------------------------------------
[2025-10-12 11:35:42] 2025-10-12 15:35:09,631 | INFO     | 
[2025-10-12 11:35:42] 2025-10-12 15:35:09,631 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 11:35:42] 2025-10-12 15:35:09,655 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,655 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,655 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,655 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,656 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,656 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,656 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,656 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,656 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,657 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,657 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,657 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,657 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,657 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,658 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,658 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,658 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:35:42] 2025-10-12 15:35:09,658 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,658 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:35:42] 2025-10-12 15:35:09,658 | INFO     | job 6829167773 has completed (purged errors)
[2025-10-12 11:35:42] 2025-10-12 15:35:09,659 | INFO     | overall cleanup function is called
[2025-10-12 11:35:42] 2025-10-12 15:35:10,667 | INFO     | --- collectZombieJob: --- 10, [17395]
[2025-10-12 11:35:42] 2025-10-12 15:35:10,667 | INFO     | zombie collector waiting for pid 17395
[2025-10-12 11:35:42] 2025-10-12 15:35:10,667 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:35:42] 2025-10-12 15:35:10,668 | INFO     | collected zombie processes
[2025-10-12 11:35:42] 2025-10-12 15:35:10,668 | INFO     | will attempt to kill all subprocesses of pid=17395
[2025-10-12 11:35:42] 2025-10-12 15:35:10,761 | INFO     | process IDs to be killed: [17395] (in reverse order)
[2025-10-12 11:35:42] 2025-10-12 15:35:10,814 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:35:42] 2025-10-12 15:35:10,815 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:35:42] 2025-10-12 15:35:10,819 | INFO     | did not find any defunct processes belonging to 17395
[2025-10-12 11:35:42] 2025-10-12 15:35:10,822 | INFO     | did not find any defunct processes belonging to 17395
[2025-10-12 11:35:42] 2025-10-12 15:35:10,823 | INFO     | ready for new job
[2025-10-12 11:35:42] 2025-10-12 15:35:10,823 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:35:42] 2025-10-12 15:35:10,824 | INFO     | ***************************************
[2025-10-12 11:35:42] 2025-10-12 15:35:10,824 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-12 11:35:42] 2025-10-12 15:35:10,824 | INFO     | ***************************************
[2025-10-12 11:35:42] 2025-10-12 15:35:10,824 | INFO     | 
[2025-10-12 11:35:42] 2025-10-12 15:35:10,825 | INFO     | architecture information:
[2025-10-12 11:35:42] 2025-10-12 15:35:10,825 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:35:42] 2025-10-12 15:35:10,838 | INFO     | cat /etc/os-release:
[2025-10-12 11:35:42] NAME="CentOS Linux"
[2025-10-12 11:35:42] VERSION="7 (Core)"
[2025-10-12 11:35:42] ID="centos"
[2025-10-12 11:35:42] ID_LIKE="rhel fedora"
[2025-10-12 11:35:42] VERSION_ID="7"
[2025-10-12 11:35:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:35:42] ANSI_COLOR="0;31"
[2025-10-12 11:35:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:35:42] HOME_URL="https://www.centos.org/"
[2025-10-12 11:35:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:35:42] 
[2025-10-12 11:35:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:35:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:35:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:35:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:35:42] 
[2025-10-12 11:35:42] 2025-10-12 15:35:10,838 | INFO     | ***************************************
[2025-10-12 11:35:42] 2025-10-12 15:35:11,341 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:35:42] 2025-10-12 15:35:11,359 | INFO     | sufficient remaining disk space (29526851584 B)
[2025-10-12 11:35:42] 2025-10-12 15:35:11,359 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:35:42] 2025-10-12 15:35:11,359 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:35:42] 2025-10-12 15:35:11,359 | INFO     | update_server=False
[2025-10-12 11:35:42] 2025-10-12 15:35:11,360 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:35:42] 2025-10-12 15:35:11,360 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:35:42] 2025-10-12 15:35:11,360 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:35:42] 2025-10-12 15:35:11,678 | INFO     | all data control threads have been joined
[2025-10-12 11:35:42] 2025-10-12 15:35:12,084 | INFO     | all job control threads have been joined
[2025-10-12 11:35:42] 2025-10-12 15:35:12,101 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:35:42] 2025-10-12 15:35:12,101 | INFO     | aborting loop
[2025-10-12 11:35:42] 2025-10-12 15:35:12,361 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:12,362 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:12,496 | INFO     | all payload control threads have been joined
[2025-10-12 11:35:42] 2025-10-12 15:35:12,586 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:12,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:35:42] 2025-10-12 15:35:12,683 | INFO     | [data] control thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:12,730 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:12,776 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:12,816 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:13,063 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:13,089 | INFO     | [job] control thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:13,107 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:13,405 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:13,477 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:13,502 | INFO     | [payload] control thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:13,742 | INFO     | [job] validate thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:14,672 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:15,367 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:35:42] 2025-10-12 15:35:17,150 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:35:42] 2025-10-12 15:35:19,025 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140507829020480)>', '<ExcThread(monitor, started 140506499643136)>']
[2025-10-12 11:35:42] 2025-10-12 15:35:24,030 | INFO     | all workflow threads have been joined
[2025-10-12 11:35:42] 2025-10-12 15:35:24,030 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:35:42] 2025-10-12 15:35:24,030 | INFO     | traces error code: 0
[2025-10-12 11:35:42] 2025-10-12 15:35:24,030 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:35:42] 2025-10-12 15:35:41,741 | INFO     | PID=11024 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 11:35:42] 2025-10-12 15:35:41,741 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:35:42] 2025-10-12 15:35:41,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:35:42] 2025-10-12 15:35:41,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:35:42] 2025-10-12 15:35:41,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:35:42] 2025-10-12 15:35:41,741 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 11:35:42] 2025-10-12 15:35:41,741 | INFO     | [monitor] control thread has ended
[2025-10-12 11:35:42] 2025-10-12 15:35:41,823 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:35:42] 2025-10-12 15:35:41,827 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:35:42] 2025-10-12 15:35:41,830 [wrapper] pilotpid: 11024
[2025-10-12 11:35:42] 2025-10-12 15:35:41,834 [wrapper] Pilot exit status: 0
[2025-10-12 11:35:42] 2025-10-12 15:35:41,849 [wrapper] pandaids: 6829167773
[2025-10-12 11:35:42] 2025-10-12 15:35:41,889 [wrapper] cleanup supervisor_pilot  3032 11025
[2025-10-12 11:35:42] 2025-10-12 15:35:41,893 [wrapper] Test setup, not cleaning
[2025-10-12 11:35:42] 2025-10-12 15:35:41,897 [wrapper] apfmon messages muted
[2025-10-12 11:35:42] 2025-10-12 15:35:41,901 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:35:42] 2025-10-12 15:35:41,905 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:35:42]  *** Error codes and diagnostics ***
[2025-10-12 11:35:42]     "exeErrorCode": 0,
[2025-10-12 11:35:42]     "exeErrorDiag": "",
[2025-10-12 11:35:42]     "pilotErrorCode": 0,
[2025-10-12 11:35:42]     "pilotErrorDiag": "",
[2025-10-12 11:35:42]  *** Listing of results directory ***
[2025-10-12 11:35:42] total 390584
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas    552446 Oct  3 22:46 pilot3.tar.gz
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas      5112 Oct  3 23:12 queuedata.json
[2025-10-12 11:35:42] -rwx------ 1 boincer umatlas     36292 Oct  3 23:14 runpilot2-wrapper.sh
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:35:42] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:31 run_atlas
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:31 job.xml
[2025-10-12 11:35:42] -rw-r--r-- 2 boincer umatlas 216456218 Oct 12 10:31 EVNT.46376901._001823.pool.root.1
[2025-10-12 11:35:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:31 start_atlas.sh
[2025-10-12 11:35:42] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:31 shared
[2025-10-12 11:35:42] -rw-r--r-- 2 boincer umatlas    565604 Oct 12 10:31 input.tar.gz
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:31 boinc_lockfile
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas      2519 Oct 12 10:31 pandaJob.out
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas    975528 Oct 12 10:32 agis_schedconf.cvmfs.json
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas   1560580 Oct 12 10:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:35:42] drwx------ 4 boincer umatlas      4096 Oct 12 10:32 pilot3
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 11:31 init_data.xml
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas 177774229 Oct 12 11:34 HITS.46376905._051471.pool.root.1
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas       529 Oct 12 11:34 boinc_task_state.xml
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas      1050 Oct 12 11:34 memory_monitor_summary.json
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas        95 Oct 12 11:35 pilot_heartbeat.json
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas    364609 Oct 12 11:35 log.46376905._051471.job.log.tgz.1
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas      7857 Oct 12 11:35 heartbeat.json
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas        27 Oct 12 11:35 wrapper_checkpoint.txt
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 11:35 boinc_mmap_file
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas       815 Oct 12 11:35 pilotlog.txt
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas    556265 Oct 12 11:35 log.46376905._051471.job.log.1
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas       357 Oct 12 11:35 output.list
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas       620 Oct 12 11:35 runtime_log
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas    942080 Oct 12 11:35 result.tar.gz
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 11:35 runtime_log.err
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas       659 Oct 12 11:35 hGSMDm4t7O8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmayJNDmFpu7An.diag
[2025-10-12 11:35:42] -rw-r--r-- 1 boincer umatlas     21807 Oct 12 11:35 stderr.txt
[2025-10-12 11:35:42] HITS file was successfully produced:
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas 177774229 Oct 12 11:34 shared/HITS.pool.root.1
[2025-10-12 11:35:42]  *** Contents of shared directory: ***
[2025-10-12 11:35:42] total 386488
[2025-10-12 11:35:42] -rw-r--r-- 2 boincer umatlas 216456218 Oct 12 10:31 ATLAS.root_0
[2025-10-12 11:35:42] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:31 start_atlas.sh
[2025-10-12 11:35:42] -rw-r--r-- 2 boincer umatlas    565604 Oct 12 10:31 input.tar.gz
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas 177774229 Oct 12 11:34 HITS.pool.root.1
[2025-10-12 11:35:42] -rw------- 1 boincer umatlas    942080 Oct 12 11:35 result.tar.gz
11:35:43 (7160): run_atlas exited; CPU time 40336.783471
11:35:43 (7160): called boinc_finish(0)

</stderr_txt>
]]>

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