Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:09:05 (1180706): wrapper (7.7.26015): starting
02:09:05 (1180706): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 02:09:05] Arguments: --nthreads 4
[2025-10-13 02:09:05] Threads: 4
[2025-10-13 02:09:05] Checking for CVMFS
[2025-10-13 02:09:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:09:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:09:05] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:09:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:09:05] 2.9.2.0 3100 3386 97048 151641 3 57 31128854 36864001 0 130560 0 3077391 99.992 118849 698 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 02:09:05] CVMFS is ok
[2025-10-13 02:09:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:09:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:09:05] Further information can be found at the LHC@home message board.
[2025-10-13 02:09:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:09:05] Checking for apptainer binary...
[2025-10-13 02:09:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:09:05] Running /usr/bin/apptainer --version
[2025-10-13 02:09:05] apptainer version 1.4.1-1.1
[2025-10-13 02:09:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:09:05] thA338
[2025-10-13 02:09:05] apptainer works
[2025-10-13 02:09:05] Set ATHENA_PROC_NUMBER=4
[2025-10-13 02:09:05] Set ATHENA_CORE_NUMBER=4
[2025-10-13 02:09:05] Starting ATLAS job with PandaID=6839590732
[2025-10-13 02:09:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:21:23]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:21:23] 2025-10-13 01:20:46,518 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:21:23] 2025-10-13 01:20:46,518 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:21:23] 2025-10-13 01:20:46,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:21:23] 2025-10-13 01:20:46,518 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:21:23] 2025-10-13 01:20:46,518 | INFO     | job 6839590732 has completed (purged errors)
[2025-10-13 03:21:23] 2025-10-13 01:20:46,518 | INFO     | overall cleanup function is called
[2025-10-13 03:21:23] 2025-10-13 01:20:47,525 | INFO     | --- collectZombieJob: --- 10, [1191066]
[2025-10-13 03:21:23] 2025-10-13 01:20:47,525 | INFO     | zombie collector waiting for pid 1191066
[2025-10-13 03:21:23] 2025-10-13 01:20:47,525 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:21:23] 2025-10-13 01:20:47,525 | INFO     | collected zombie processes
[2025-10-13 03:21:23] 2025-10-13 01:20:47,525 | INFO     | will attempt to kill all subprocesses of pid=1191066
[2025-10-13 03:21:23] 2025-10-13 01:20:47,570 | INFO     | process IDs to be killed: [1191066] (in reverse order)
[2025-10-13 03:21:23] 2025-10-13 01:20:47,601 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:21:23] 2025-10-13 01:20:47,601 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:21:23] 2025-10-13 01:20:47,603 | INFO     | did not find any defunct processes belonging to 1191066
[2025-10-13 03:21:23] 2025-10-13 01:20:47,604 | INFO     | did not find any defunct processes belonging to 1191066
[2025-10-13 03:21:23] 2025-10-13 01:20:47,604 | INFO     | ready for new job
[2025-10-13 03:21:23] 2025-10-13 01:20:47,604 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:21:23] 2025-10-13 01:20:47,605 | INFO     | ***************************************
[2025-10-13 03:21:23] 2025-10-13 01:20:47,605 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:21:23] 2025-10-13 01:20:47,605 | INFO     | ***************************************
[2025-10-13 03:21:23] 2025-10-13 01:20:47,605 | INFO     | 
[2025-10-13 03:21:23] 2025-10-13 01:20:47,606 | INFO     | architecture information:
[2025-10-13 03:21:23] 2025-10-13 01:20:47,606 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:21:23] 2025-10-13 01:20:47,619 | INFO     | cat /etc/os-release:
[2025-10-13 03:21:23] NAME="CentOS Linux"
[2025-10-13 03:21:23] VERSION="7 (Core)"
[2025-10-13 03:21:23] ID="centos"
[2025-10-13 03:21:23] ID_LIKE="rhel fedora"
[2025-10-13 03:21:23] VERSION_ID="7"
[2025-10-13 03:21:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:21:23] ANSI_COLOR="0;31"
[2025-10-13 03:21:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:21:23] HOME_URL="https://www.centos.org/"
[2025-10-13 03:21:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:21:23] 
[2025-10-13 03:21:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:21:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:21:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:21:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:21:23] 
[2025-10-13 03:21:23] 2025-10-13 01:20:47,619 | INFO     | ***************************************
[2025-10-13 03:21:23] 2025-10-13 01:20:48,122 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 03:21:23] 2025-10-13 01:20:48,138 | INFO     | sufficient remaining disk space (228109320192 B)
[2025-10-13 03:21:23] 2025-10-13 01:20:48,138 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:21:23] 2025-10-13 01:20:48,139 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:21:23] 2025-10-13 01:20:48,139 | INFO     | update_server=False
[2025-10-13 03:21:23] 2025-10-13 01:20:48,139 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:21:23] 2025-10-13 01:20:48,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:21:23] 2025-10-13 01:20:48,139 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:21:23] 2025-10-13 01:20:48,139 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:21:23] 2025-10-13 01:20:48,139 | INFO     | aborting loop
[2025-10-13 03:21:23] 2025-10-13 01:20:48,905 | INFO     | all payload control threads have been joined
[2025-10-13 03:21:23] 2025-10-13 01:20:49,033 | INFO     | all data control threads have been joined
[2025-10-13 03:21:23] 2025-10-13 01:20:49,140 | INFO     | all job control threads have been joined
[2025-10-13 03:21:23] 2025-10-13 01:20:49,144 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:49,145 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:49,145 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:49,207 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:49,501 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:21:23] 2025-10-13 01:20:49,834 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:49,909 | INFO     | [payload] control thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:50,005 | INFO     | [job] validate thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:50,038 | INFO     | [data] control thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:50,049 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:50,071 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:50,118 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:50,138 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:50,145 | INFO     | [job] control thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:50,480 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:51,507 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:20:52,146 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:21:23] 2025-10-13 01:21:17,677 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:21:23] 2025-10-13 01:21:18,280 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140113485252416)>', '<ExcThread(monitor, started 140112620934912)>']
[2025-10-13 03:21:23] 2025-10-13 01:21:18,832 | INFO     | PID=1184494 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:21:23] 2025-10-13 01:21:18,832 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:21:23] 2025-10-13 01:21:18,832 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:21:23] 2025-10-13 01:21:18,832 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:21:23] 2025-10-13 01:21:18,832 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:21:23] 2025-10-13 01:21:18,832 | INFO     | [monitor] control thread has ended
[2025-10-13 03:21:23] 2025-10-13 01:21:23,306 | INFO     | all workflow threads have been joined
[2025-10-13 03:21:23] 2025-10-13 01:21:23,306 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:21:23] 2025-10-13 01:21:23,307 | INFO     | traces error code: 0
[2025-10-13 03:21:23] 2025-10-13 01:21:23,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:21:23] 2025-10-13 01:21:23,386 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:21:23] 2025-10-13 01:21:23,391 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:21:23] 2025-10-13 01:21:23,394 [wrapper] pilotpid: 1184494
[2025-10-13 03:21:23] 2025-10-13 01:21:23,398 [wrapper] Pilot exit status: 0
[2025-10-13 03:21:23] 2025-10-13 01:21:23,409 [wrapper] pandaids: 6839590732
[2025-10-13 03:21:23] 2025-10-13 01:21:23,430 [wrapper] cleanup supervisor_pilot 1201133 1184495
[2025-10-13 03:21:23] 2025-10-13 01:21:23,433 [wrapper] Test setup, not cleaning
[2025-10-13 03:21:23] 2025-10-13 01:21:23,437 [wrapper] apfmon messages muted
[2025-10-13 03:21:23] 2025-10-13 01:21:23,441 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:21:23] 2025-10-13 01:21:23,444 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:21:23]  *** Error codes and diagnostics ***
[2025-10-13 03:21:23]     "exeErrorCode": 0,
[2025-10-13 03:21:23]     "exeErrorDiag": "",
[2025-10-13 03:21:23]     "pilotErrorCode": 0,
[2025-10-13 03:21:23]     "pilotErrorDiag": "",
[2025-10-13 03:21:23]  *** Listing of results directory ***
[2025-10-13 03:21:23] total 411180
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:12 queuedata.json
[2025-10-13 03:21:23] -rwx------ 1 boinc boinc     36292 Oct 12 08:14 runpilot2-wrapper.sh
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:21:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:09 run_atlas
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:09 job.xml
[2025-10-13 03:21:23] -rw-r--r-- 2 boinc boinc 221756353 Oct 13 02:09 EVNT.46676267._004337.pool.root.1
[2025-10-13 03:21:23] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:09 shared
[2025-10-13 03:21:23] -rw-r--r-- 2 boinc boinc    569673 Oct 13 02:09 input.tar.gz
[2025-10-13 03:21:23] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:09 start_atlas.sh
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:09 boinc_setup_complete
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc      6375 Oct 13 02:09 init_data.xml
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:09 boinc_lockfile
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc      2550 Oct 13 02:09 pandaJob.out
[2025-10-13 03:21:23] -rw------- 1 boinc boinc    975603 Oct 13 02:09 agis_schedconf.cvmfs.json
[2025-10-13 03:21:23] -rw------- 1 boinc boinc   1560580 Oct 13 02:09 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:21:23] drwx------ 5 boinc boinc      4096 Oct 13 02:09 pilot3
[2025-10-13 03:21:23] -rw------- 1 boinc boinc 193613292 Oct 13 03:20 HITS.46676269._072301.pool.root.1
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc       529 Oct 13 03:20 boinc_task_state.xml
[2025-10-13 03:21:23] -rw------- 1 boinc boinc        95 Oct 13 03:20 pilot_heartbeat.json
[2025-10-13 03:21:23] -rw------- 1 boinc boinc      1023 Oct 13 03:20 memory_monitor_summary.json
[2025-10-13 03:21:23] -rw------- 1 boinc boinc    256021 Oct 13 03:20 log.46676269._072301.job.log.tgz.1
[2025-10-13 03:21:23] -rw------- 1 boinc boinc      7760 Oct 13 03:20 heartbeat.json
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc      8192 Oct 13 03:21 boinc_mmap_file
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc        27 Oct 13 03:21 wrapper_checkpoint.txt
[2025-10-13 03:21:23] -rw------- 1 boinc boinc      4752 Oct 13 03:21 pilotlog.txt
[2025-10-13 03:21:23] -rw------- 1 boinc boinc    638564 Oct 13 03:21 log.46676269._072301.job.log.1
[2025-10-13 03:21:23] -rw------- 1 boinc boinc       357 Oct 13 03:21 output.list
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc       620 Oct 13 03:21 runtime_log
[2025-10-13 03:21:23] -rw------- 1 boinc boinc    911360 Oct 13 03:21 result.tar.gz
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc      8777 Oct 13 03:21 runtime_log.err
[2025-10-13 03:21:23] -rw------- 1 boinc boinc       658 Oct 13 03:21 FymLDm8W4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQniNDmhGSxTo.diag
[2025-10-13 03:21:23] -rw-r--r-- 1 boinc boinc     11210 Oct 13 03:21 stderr.txt
[2025-10-13 03:21:23] HITS file was successfully produced:
[2025-10-13 03:21:23] -rw------- 1 boinc boinc 193613292 Oct 13 03:20 shared/HITS.pool.root.1
[2025-10-13 03:21:23]  *** Contents of shared directory: ***
[2025-10-13 03:21:23] total 407112
[2025-10-13 03:21:23] -rw-r--r-- 2 boinc boinc 221756353 Oct 13 02:09 ATLAS.root_0
[2025-10-13 03:21:23] -rw-r--r-- 2 boinc boinc    569673 Oct 13 02:09 input.tar.gz
[2025-10-13 03:21:23] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:09 start_atlas.sh
[2025-10-13 03:21:23] -rw------- 1 boinc boinc 193613292 Oct 13 03:20 HITS.pool.root.1
[2025-10-13 03:21:23] -rw------- 1 boinc boinc    911360 Oct 13 03:21 result.tar.gz
03:21:45 (1180706): run_atlas exited; CPU time 16067.309000
03:21:45 (1180706): called boinc_finish(0)

</stderr_txt>
]]>

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