Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:45:50 (530669): wrapper (7.7.26015): starting
07:45:50 (530669): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 07:45:50] Arguments: --nthreads 8
[2025-10-12 07:45:50] Threads: 8
[2025-10-12 07:45:50] Checking for CVMFS
[2025-10-12 07:45:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:45:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:45:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:45:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:45:51] 2.11.3.0 1869 30057 198344 151623 0 415 33166554 45568000 17216 130560 0 188299935 99.846 82300332 25017 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 07:45:51] CVMFS is ok
[2025-10-12 07:45:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:45:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:45:51] Further information can be found at the LHC@home message board.
[2025-10-12 07:45:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:45:51] Checking for apptainer binary...
[2025-10-12 07:45:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:45:52] Running /usr/bin/apptainer --version
[2025-10-12 07:45:52] apptainer version 1.4.1-1.el9
[2025-10-12 07:45:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:45:52] wns0011.triumf.lcg
[2025-10-12 07:45:52] apptainer works
[2025-10-12 07:45:52] Set ATHENA_PROC_NUMBER=8
[2025-10-12 07:45:52] Set ATHENA_CORE_NUMBER=8
[2025-10-12 07:45:52] Starting ATLAS job with PandaID=6839989719
[2025-10-12 07:45:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:52:45]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | WARNING  | wrong length of table data, x=[1760280496.0, 1760280557.0], y=[1051.0, 567681.0] (must be same and length>=4)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,641 | INFO     | ..............................
[2025-10-12 07:52:45] 2025-10-12 14:52:02,641 | INFO     | . Timing measurements:
[2025-10-12 07:52:45] 2025-10-12 14:52:02,641 | INFO     | . get job = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,642 | INFO     | . initial setup = 6 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,642 | INFO     | . payload setup = 32 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . stage-in = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . payload execution = 98 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . stage-out = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . log creation = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | ..............................
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839989719/pilotlog.txt
[2025-10-12 07:52:45] 2025-10-12 14:52:02,681 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 07:52:45] - Log from pilotlog.txt -
[2025-10-12 07:52:45] 2025-10-12 14:52:02,639 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839989719/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,639 | INFO     | extracted standard info from prmon json
[2025-10-12 07:52:45] 2025-10-12 14:52:02,639 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:52:45] 2025-10-12 14:52:02,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | WARNING  | wrong length of table data, x=[1760280496.0, 1760280557.0], y=[1051.0, 567681.0] (must be same and length>=4)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,641 | INFO     | ..............................
[2025-10-12 07:52:45] 2025-10-12 14:52:02,641 | INFO     | . Timing measurements:
[2025-10-12 07:52:45] 2025-10-12 14:52:02,641 | INFO     | . get job = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,642 | INFO     | . initial setup = 6 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,642 | INFO     | . payload setup = 32 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . stage-in = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . payload execution = 98 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . stage-out = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . log creation = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | ..............................
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839989719/pilotlog.txt
[2025-10-12 07:52:45] 2025-10-12 14:52:02,682 | WARNING  | 
[2025-10-12 07:52:45] [begin log extracts]
[2025-10-12 07:52:45] - Log from pilotlog.txt -
[2025-10-12 07:52:45] 2025-10-12 14:52:02,639 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839989719/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,639 | INFO     | extracted standard info from prmon json
[2025-10-12 07:52:45] 2025-10-12 14:52:02,639 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:52:45] 2025-10-12 14:52:02,639 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | WARNING  | wrong length of table data, x=[1760280496.0, 1760280557.0], y=[1051.0, 567681.0] (must be same and length>=4)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,640 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,641 | INFO     | ..............................
[2025-10-12 07:52:45] 2025-10-12 14:52:02,641 | INFO     | . Timing measurements:
[2025-10-12 07:52:45] 2025-10-12 14:52:02,641 | INFO     | . get job = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,642 | INFO     | . initial setup = 6 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,642 | INFO     | . payload setup = 32 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . stage-in = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . payload execution = 98 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . stage-out = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | . log creation = 0 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | ..............................
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 07:52:45] 2025-10-12 14:52:02,643 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839989719/pilotlog.txt
[2025-10-12 07:52:45] [end log extracts]
[2025-10-12 07:52:45] 2025-10-12 14:52:02,682 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,682 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 07:52:45] 2025-10-12 14:52:02,923 | INFO     | 
[2025-10-12 07:52:45] 2025-10-12 14:52:02,924 | INFO     | job summary report
[2025-10-12 07:52:45] 2025-10-12 14:52:02,924 | INFO     | --------------------------------------------------
[2025-10-12 07:52:45] 2025-10-12 14:52:02,924 | INFO     | PanDA job id: 6839989719
[2025-10-12 07:52:45] 2025-10-12 14:52:02,924 | INFO     | task id: 46676269
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 07:49:26,471 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | pilot state: failed 
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | transexitcode: 65
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | exeerrorcode: 65
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | exitcode: 65
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | cpuconsumptiontime: 20 s
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | nevents: 0
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | neventsw: 0
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | pid: 541272
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | pgrp: 541272
[2025-10-12 07:52:45] 2025-10-12 14:52:02,925 | INFO     | corecount: 8
[2025-10-12 07:52:45] 2025-10-12 14:52:02,926 | INFO     | event service: False
[2025-10-12 07:52:45] 2025-10-12 14:52:02,926 | INFO     | sizes: {0: 2348029, 1: 2348711, 2: 2348910, 13: 2348910, 23: 2349256, 134: 2372569, 135: 2372673, 136: 2376993, 137: 2377021, 279: 2377187}
[2025-10-12 07:52:45] 2025-10-12 14:52:02,926 | INFO     | --------------------------------------------------
[2025-10-12 07:52:45] 2025-10-12 14:52:02,926 | INFO     | 
[2025-10-12 07:52:45] 2025-10-12 14:52:02,926 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 07:52:45] 2025-10-12 14:52:03,065 | INFO     | time since job start (326s) is within the limit (172800.0s)
[2025-10-12 07:52:45] 2025-10-12 14:52:03,169 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,170 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,171 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:52:45] 2025-10-12 14:52:03,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,171 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:52:45] 2025-10-12 14:52:03,171 | INFO     | job 6839989719 has completed (purged errors)
[2025-10-12 07:52:45] 2025-10-12 14:52:03,171 | INFO     | overall cleanup function is called
[2025-10-12 07:52:45] 2025-10-12 14:52:04,178 | INFO     | --- collectZombieJob: --- 10, [541272]
[2025-10-12 07:52:45] 2025-10-12 14:52:04,178 | INFO     | zombie collector waiting for pid 541272
[2025-10-12 07:52:45] 2025-10-12 14:52:04,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:52:45] 2025-10-12 14:52:04,178 | INFO     | collected zombie processes
[2025-10-12 07:52:45] 2025-10-12 14:52:04,178 | INFO     | will attempt to kill all subprocesses of pid=541272
[2025-10-12 07:52:45] 2025-10-12 14:52:04,785 | INFO     | process IDs to be killed: [541272] (in reverse order)
[2025-10-12 07:52:45] 2025-10-12 14:52:05,296 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:52:45] 2025-10-12 14:52:05,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:52:45] 2025-10-12 14:52:05,307 | INFO     | did not find any defunct processes belonging to 541272
[2025-10-12 07:52:45] 2025-10-12 14:52:05,318 | INFO     | did not find any defunct processes belonging to 541272
[2025-10-12 07:52:45] 2025-10-12 14:52:05,318 | INFO     | ready for new job
[2025-10-12 07:52:45] 2025-10-12 14:52:05,318 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:52:45] 2025-10-12 14:52:05,320 | INFO     | ***************************************
[2025-10-12 07:52:45] 2025-10-12 14:52:05,320 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:52:45] 2025-10-12 14:52:05,320 | INFO     | ***************************************
[2025-10-12 07:52:45] 2025-10-12 14:52:05,320 | INFO     | 
[2025-10-12 07:52:45] 2025-10-12 14:52:05,322 | INFO     | architecture information:
[2025-10-12 07:52:45] 2025-10-12 14:52:05,342 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:52:45] 2025-10-12 14:52:05,411 | INFO     | cat /etc/os-release:
[2025-10-12 07:52:45] NAME="CentOS Linux"
[2025-10-12 07:52:45] VERSION="7 (Core)"
[2025-10-12 07:52:45] ID="centos"
[2025-10-12 07:52:45] ID_LIKE="rhel fedora"
[2025-10-12 07:52:45] VERSION_ID="7"
[2025-10-12 07:52:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:52:45] ANSI_COLOR="0;31"
[2025-10-12 07:52:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:52:45] HOME_URL="https://www.centos.org/"
[2025-10-12 07:52:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:52:45] 
[2025-10-12 07:52:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:52:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:52:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:52:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:52:45] 
[2025-10-12 07:52:45] 2025-10-12 14:52:05,411 | INFO     | ***************************************
[2025-10-12 07:52:45] 2025-10-12 14:52:05,915 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 07:52:45] 2025-10-12 14:52:05,934 | INFO     | sufficient remaining disk space (1219378544640 B)
[2025-10-12 07:52:45] 2025-10-12 14:52:05,935 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:52:45] 2025-10-12 14:52:05,935 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:52:45] 2025-10-12 14:52:05,935 | INFO     | update_server=False
[2025-10-12 07:52:45] 2025-10-12 14:52:05,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:52:45] 2025-10-12 14:52:05,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:52:45] 2025-10-12 14:52:05,935 | INFO     | aborting loop
[2025-10-12 07:52:45] 2025-10-12 14:52:06,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:52:45] 2025-10-12 14:52:06,794 | INFO     | all payload control threads have been joined
[2025-10-12 07:52:45] 2025-10-12 14:52:06,941 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:06,941 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:07,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:52:45] 2025-10-12 14:52:07,051 | INFO     | all data control threads have been joined
[2025-10-12 07:52:45] 2025-10-12 14:52:07,364 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:07,368 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:07,378 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:07,511 | INFO     | all job control threads have been joined
[2025-10-12 07:52:45] 2025-10-12 14:52:07,537 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:07,582 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:07,675 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:07,799 | INFO     | [payload] control thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:07,943 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:52:45] 2025-10-12 14:52:08,095 | INFO     | [data] control thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:08,274 | INFO     | [job] validate thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:08,348 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:08,494 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:08,517 | INFO     | [job] control thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:08,949 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:11,014 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:52:45] 2025-10-12 14:52:36,729 | INFO     | PID=534472 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 07:52:45] 2025-10-12 14:52:36,730 | INFO     | .. there are 33 such processes running
[2025-10-12 07:52:45] 2025-10-12 14:52:36,730 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:52:45] 2025-10-12 14:52:36,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:52:45] 2025-10-12 14:52:36,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:52:45] 2025-10-12 14:52:37,201 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:52:45] 2025-10-12 14:52:39,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280746092352)>', '<ExcThread(monitor, started 140280426632960)>']
[2025-10-12 07:52:45] 2025-10-12 14:52:39,774 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:52:45] 2025-10-12 14:52:39,774 | INFO     | [monitor] control thread has ended
[2025-10-12 07:52:45] 2025-10-12 14:52:44,089 | INFO     | all workflow threads have been joined
[2025-10-12 07:52:45] 2025-10-12 14:52:44,089 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:52:45] 2025-10-12 14:52:44,089 | INFO     | traces error code: 0
[2025-10-12 07:52:45] 2025-10-12 14:52:44,090 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:52:45] 2025-10-12 14:52:44,548 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:52:45] 2025-10-12 14:52:44,558 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:52:45] 2025-10-12 14:52:44,564 [wrapper] pilotpid: 534472
[2025-10-12 07:52:45] 2025-10-12 14:52:44,566 [wrapper] Pilot exit status: 0
[2025-10-12 07:52:45] 2025-10-12 14:52:44,582 [wrapper] pandaids: 6839989719
[2025-10-12 07:52:45] 2025-10-12 14:52:44,664 [wrapper] cleanup supervisor_pilot  534478 534473
[2025-10-12 07:52:45] 2025-10-12 14:52:44,676 [wrapper] Test setup, not cleaning
[2025-10-12 07:52:45] 2025-10-12 14:52:44,690 [wrapper] apfmon messages muted
[2025-10-12 07:52:45] 2025-10-12 14:52:44,711 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:52:45] 2025-10-12 14:52:44,715 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:52:45]  *** Error codes and diagnostics ***
[2025-10-12 07:52:45]     "exeErrorCode": 65,
[2025-10-12 07:52:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 07:52:45]     "pilotErrorCode": 1305,
[2025-10-12 07:52:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 07:52:45]  *** Listing of results directory ***
[2025-10-12 07:52:45] total 221144
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc    557409 Oct 12 05:35 pilot3.tar.gz
[2025-10-12 07:52:45] -rwx------. 1 boinc boinc     36292 Oct 12 06:03 runpilot2-wrapper.sh
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc      5112 Oct 12 06:03 queuedata.json
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc       100 Oct 12 07:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:52:45] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 07:45 run_atlas
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc       105 Oct 12 07:45 job.xml
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc      6444 Oct 12 07:45 init_data.xml
[2025-10-12 07:52:45] -rw-r--r--. 2 boinc boinc 222300296 Oct 12 07:45 EVNT.46676267._003849.pool.root.1
[2025-10-12 07:52:45] -rw-r--r--. 2 boinc boinc     15120 Oct 12 07:45 start_atlas.sh
[2025-10-12 07:52:45] drwxrwx--x. 2 boinc boinc      4096 Oct 12 07:45 shared
[2025-10-12 07:52:45] -rw-r--r--. 2 boinc boinc    569674 Oct 12 07:45 input.tar.gz
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc         0 Oct 12 07:45 boinc_lockfile
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc      2550 Oct 12 07:45 pandaJob.out
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc    975528 Oct 12 07:46 agis_schedconf.cvmfs.json
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc   1560580 Oct 12 07:46 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:52:45] drwx------. 5 boinc boinc      4096 Oct 12 07:46 pilot3
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc       524 Oct 12 07:49 boinc_task_state.xml
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc       985 Oct 12 07:49 memory_monitor_summary.json
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc     22727 Oct 12 07:49 log.46676269._079051.job.log.tgz.1
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc        95 Oct 12 07:51 pilot_heartbeat.json
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc      8391 Oct 12 07:52 heartbeat.json
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc        23 Oct 12 07:52 wrapper_checkpoint.txt
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc      8192 Oct 12 07:52 boinc_mmap_file
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc      4822 Oct 12 07:52 pilotlog.txt
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc    101497 Oct 12 07:52 log.46676269._079051.job.log.1
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc       188 Oct 12 07:52 output.list
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc       620 Oct 12 07:52 runtime_log
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc    143360 Oct 12 07:52 result.tar.gz
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc      8526 Oct 12 07:52 runtime_log.err
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc       644 Oct 12 07:52 jRFKDmwuAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmcwjNDm0KRzQm.diag
[2025-10-12 07:52:45] -rw-r--r--. 1 boinc boinc     21892 Oct 12 07:52 stderr.txt
[2025-10-12 07:52:45] No HITS result produced
[2025-10-12 07:52:45]  *** Contents of shared directory: ***
[2025-10-12 07:52:45] total 217812
[2025-10-12 07:52:45] -rw-r--r--. 2 boinc boinc 222300296 Oct 12 07:45 ATLAS.root_0
[2025-10-12 07:52:45] -rw-r--r--. 2 boinc boinc     15120 Oct 12 07:45 start_atlas.sh
[2025-10-12 07:52:45] -rw-r--r--. 2 boinc boinc    569674 Oct 12 07:45 input.tar.gz
[2025-10-12 07:52:45] -rw-------. 1 boinc boinc    143360 Oct 12 07:52 result.tar.gz
07:52:47 (530669): run_atlas exited; CPU time 33.387573
07:52:47 (530669): called boinc_finish(0)

</stderr_txt>
]]>

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