Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
20:15:16 (4049493): wrapper (7.7.26015): starting
20:15:16 (4049493): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 20:15:16] Arguments: --nthreads 12
[2025-10-12 20:15:16] Threads: 12
[2025-10-12 20:15:16] Checking for CVMFS
[2025-10-12 20:15:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 20:15:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 20:15:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 20:15:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 20:15:38] 2.13.2.0 4049703 0 24488 151636 3 1 2405628 4096001 0 130560 0 0 0.000 1291 951 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 20:15:38] CVMFS is ok
[2025-10-12 20:15:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 20:15:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 20:15:38] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 20:15:38] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 20:15:38] Further information can be found at the LHC@home message board.
[2025-10-12 20:15:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 20:15:38] Checking for apptainer binary...
[2025-10-12 20:15:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 20:15:38] Running /usr/bin/apptainer --version
[2025-10-12 20:15:38] apptainer version 1.4.3
[2025-10-12 20:15:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 20:15:38] test-run
[2025-10-12 20:15:38] apptainer works
[2025-10-12 20:15:38] Set ATHENA_PROC_NUMBER=12
[2025-10-12 20:15:38] Set ATHENA_CORE_NUMBER=12
[2025-10-12 20:15:38] Starting ATLAS job with PandaID=6839164526
[2025-10-12 20:15:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 20:44:12]  *** The last 200 lines of the pilot log: ***
[2025-10-12 20:44:12]  mtime=0
[2025-10-12 20:44:12]  protocol_id=None
[2025-10-12 20:44:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 20:44:12]  replicas=None
[2025-10-12 20:44:12]  scope=mc23_13p6TeV
[2025-10-12 20:44:12]  status=None
[2025-10-12 20:44:12]  status_code=0
[2025-10-12 20:44:12]  storage_token=
[2025-10-12 20:44:12]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6839164526/log.46676269._068017.job.log.tgz.1
[2025-10-12 20:44:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/28/log.46676269._068017.job.log.tgz.1
[2025-10-12 20:44:12]  workdir=None
[2025-10-12 20:44:12] ]
[2025-10-12 20:44:12] 2025-10-12 20:43:37,681 | INFO     | transferring file log.46676269._068017.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6839164526/log.46676269._068017.job.log.tgz.1 to /var/lib/boinc
[2025-10-12 20:44:12] 2025-10-12 20:43:37,681 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6839164526/log.46676269._068017.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.466762
[2025-10-12 20:44:12] 2025-10-12 20:43:37,686 | INFO     | adding to output.list: log.46676269._068017.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/28/log.46676269._068017.job.log.tg
[2025-10-12 20:44:12] 2025-10-12 20:43:37,687 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 20:44:12] 2025-10-12 20:43:37,687 | INFO     | summary of transferred files:
[2025-10-12 20:44:12] 2025-10-12 20:43:37,687 | INFO     |  -- lfn=log.46676269._068017.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 20:44:12] 2025-10-12 20:43:37,687 | INFO     | stage-out finished correctly
[2025-10-12 20:44:12] 2025-10-12 20:43:37,702 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 20:44:12] 2025-10-12 20:43:37,738 | INFO     | job 6839164526 has state=finished
[2025-10-12 20:44:12] 2025-10-12 20:43:37,738 | INFO     | preparing for final server update for job 6839164526 in state='finished'
[2025-10-12 20:44:12] 2025-10-12 20:43:37,738 | INFO     | this job has now completed (state=finished)
[2025-10-12 20:44:12] 2025-10-12 20:43:37,738 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 20:44:12] 2025-10-12 20:43:37,738 | INFO     | log transfer has been attempted: DONE
[2025-10-12 20:44:12] 2025-10-12 20:43:37,738 | INFO     | job 6839164526 has finished - writing final server update
[2025-10-12 20:44:12] 2025-10-12 20:43:37,738 | INFO     | total number of processed events: 400 (read)
[2025-10-12 20:44:12] 2025-10-12 20:43:37,739 | INFO     | executing command: lscpu
[2025-10-12 20:44:12] 2025-10-12 20:43:37,744 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 20:44:12] 2025-10-12 20:43:39,318 | INFO     | time since job start (1670s) is within the limit (172800.0s)
[2025-10-12 20:44:12] 2025-10-12 20:43:40,014 | INFO     | monitor loop #133: job 0:6839164526 is in state 'finished'
[2025-10-12 20:44:12] 2025-10-12 20:43:40,014 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 20:44:12] 2025-10-12 20:43:40,609 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 20:44:12] 2025-10-12 20:43:40,610 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.979999999998
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6839164526/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | extracted standard info from prmon json
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | fitting pss+swap vs Time
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | sum of square deviations: 2865170.0
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | sum of deviations: 423904921.0
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | mean x: 1760301078.0
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | mean y: 2861442.0476190476
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | -- intersect: -260435538166.28445
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | intersect: -260435538166.28445
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | chi2: 0.027799609183486906
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | -- intersect: -260435538166.28445
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | current memory leak: 147.95 B/s (using 21 data points, chi2=0.03)
[2025-10-12 20:44:12] 2025-10-12 20:43:40,611 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | ..............................
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | . Timing measurements:
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | . get job = 0 s
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | . initial setup = 2 s
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | . payload setup = 1 s
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | . stage-in = 0 s
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | . payload execution = 1652 s
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | . stage-out = 0 s
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | . log creation = 0 s
[2025-10-12 20:44:12] 2025-10-12 20:43:40,612 | INFO     | ..............................
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | 
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | job summary report
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | --------------------------------------------------
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | PanDA job id: 6839164526
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | task id: 46676269
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | errors: (none)
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | pilot state: finished 
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | transexitcode: 0
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | exeerrorcode: 0
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | exeerrordiag: 
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | exitcode: 0
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | exitmsg: OK
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | cpuconsumptiontime: 15187 s
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | nevents: 400
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | neventsw: 0
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | pid: 4060561
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | pgrp: 4060561
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | corecount: 12
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | event service: False
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | sizes: {0: 2348864, 1: 2349126, 11: 2349154, 1656: 2383020, 1659: 2383158}
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | --------------------------------------------------
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | 
[2025-10-12 20:44:12] 2025-10-12 20:43:40,630 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-12 20:44:12] 2025-10-12 20:43:40,635 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | job 6839164526 has completed (purged errors)
[2025-10-12 20:44:12] 2025-10-12 20:43:40,636 | INFO     | overall cleanup function is called
[2025-10-12 20:44:12] 2025-10-12 20:43:41,642 | INFO     | --- collectZombieJob: --- 10, [4060561]
[2025-10-12 20:44:12] 2025-10-12 20:43:41,642 | INFO     | zombie collector waiting for pid 4060561
[2025-10-12 20:44:12] 2025-10-12 20:43:41,642 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 20:44:12] 2025-10-12 20:43:41,642 | INFO     | collected zombie processes
[2025-10-12 20:44:12] 2025-10-12 20:43:41,642 | INFO     | will attempt to kill all subprocesses of pid=4060561
[2025-10-12 20:44:12] 2025-10-12 20:43:41,656 | INFO     | process IDs to be killed: [4060561] (in reverse order)
[2025-10-12 20:44:12] 2025-10-12 20:43:41,667 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 20:44:12] 2025-10-12 20:43:41,667 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 20:44:12] 2025-10-12 20:43:41,667 | INFO     | did not find any defunct processes belonging to 4060561
[2025-10-12 20:44:12] 2025-10-12 20:43:41,668 | INFO     | did not find any defunct processes belonging to 4060561
[2025-10-12 20:44:12] 2025-10-12 20:43:41,668 | INFO     | ready for new job
[2025-10-12 20:44:12] 2025-10-12 20:43:41,668 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 20:44:12] 2025-10-12 20:43:41,668 | INFO     | ***************************************
[2025-10-12 20:44:12] 2025-10-12 20:43:41,668 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 20:44:12] 2025-10-12 20:43:41,668 | INFO     | ***************************************
[2025-10-12 20:44:12] 2025-10-12 20:43:41,668 | INFO     | 
[2025-10-12 20:44:12] 2025-10-12 20:43:41,669 | INFO     | pilot is running in a VM
[2025-10-12 20:44:12] 2025-10-12 20:43:41,669 | INFO     | architecture information:
[2025-10-12 20:44:12] 2025-10-12 20:43:41,669 | INFO     | executing command: cat /etc/os-release
[2025-10-12 20:44:12] 2025-10-12 20:43:41,672 | INFO     | cat /etc/os-release:
[2025-10-12 20:44:12] NAME="CentOS Linux"
[2025-10-12 20:44:12] VERSION="7 (Core)"
[2025-10-12 20:44:12] ID="centos"
[2025-10-12 20:44:12] ID_LIKE="rhel fedora"
[2025-10-12 20:44:12] VERSION_ID="7"
[2025-10-12 20:44:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 20:44:12] ANSI_COLOR="0;31"
[2025-10-12 20:44:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 20:44:12] HOME_URL="https://www.centos.org/"
[2025-10-12 20:44:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 20:44:12] 
[2025-10-12 20:44:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 20:44:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 20:44:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 20:44:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 20:44:12] 
[2025-10-12 20:44:12] 2025-10-12 20:43:41,673 | INFO     | ***************************************
[2025-10-12 20:44:12] 2025-10-12 20:43:42,175 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-12 20:44:12] 2025-10-12 20:43:42,180 | INFO     | sufficient remaining disk space (25882001408 B)
[2025-10-12 20:44:12] 2025-10-12 20:43:42,180 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 20:44:12] 2025-10-12 20:43:42,180 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 20:44:12] 2025-10-12 20:43:42,180 | INFO     | update_server=False
[2025-10-12 20:44:12] 2025-10-12 20:43:42,180 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 20:44:12] 2025-10-12 20:43:42,180 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:44:12] 2025-10-12 20:43:42,262 | INFO     | all data control threads have been joined
[2025-10-12 20:44:12] 2025-10-12 20:43:42,517 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 20:44:12] 2025-10-12 20:43:42,517 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 20:44:12] 2025-10-12 20:43:42,517 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 20:44:12] 2025-10-12 20:43:42,517 | INFO     | will abort loop
[2025-10-12 20:44:12] 2025-10-12 20:43:43,185 | INFO     | [job] retrieve thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:43,185 | INFO     | [job] queue monitor thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:43,210 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 20:44:12] 2025-10-12 20:43:43,268 | INFO     | [data] control thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:43,339 | INFO     | all job control threads have been joined
[2025-10-12 20:44:12] 2025-10-12 20:43:43,339 | INFO     | [payload] validate_post thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:43,503 | INFO     | all payload control threads have been joined
[2025-10-12 20:44:12] 2025-10-12 20:43:43,522 | INFO     | [job] job monitor thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:43,617 | INFO     | [data] copytool_in thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:43,663 | INFO     | [payload] failed_post thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:43,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 20:44:12] 2025-10-12 20:43:44,106 | INFO     | [job] validate thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:44,156 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:44,247 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:44,344 | INFO     | [job] control thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:44,509 | INFO     | [payload] control thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:44,522 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:45,215 | INFO     | [data] copytool_out thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:47,727 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:51,668 | INFO     | [monitor] cgroup control has ended
[2025-10-12 20:44:12] 2025-10-12 20:43:52,583 | INFO     | job.realtimelogging is not enabled
[2025-10-12 20:44:12] 2025-10-12 20:43:53,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 20:44:12] 2025-10-12 20:43:55,525 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130837648516928)>', '<ExcThread(monitor, started 130837144119040)>']
[2025-10-12 20:44:12] 2025-10-12 20:44:00,529 | INFO     | all workflow threads have been joined
[2025-10-12 20:44:12] 2025-10-12 20:44:00,529 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 20:44:12] 2025-10-12 20:44:00,530 | INFO     | traces error code: 0
[2025-10-12 20:44:12] 2025-10-12 20:44:00,530 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 20:44:12] 2025-10-12 20:44:12,411 | INFO     | PID=4053915 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 20:44:12] 2025-10-12 20:44:12,411 | INFO     | .. there are 2 such processes running
[2025-10-12 20:44:12] 2025-10-12 20:44:12,411 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 20:44:12] 2025-10-12 20:44:12,411 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 20:44:12] 2025-10-12 20:44:12,411 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 20:44:12] 2025-10-12 20:44:12,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 20:44:12] 2025-10-12 20:44:12,411 | INFO     | [monitor] control thread has ended
[2025-10-12 20:44:12] 2025-10-12 20:44:12,439 [wrapper] ==== pilot stdout END ====
[2025-10-12 20:44:12] 2025-10-12 20:44:12,440 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 20:44:12] 2025-10-12 20:44:12,441 [wrapper] pilotpid: 4053915
[2025-10-12 20:44:12] 2025-10-12 20:44:12,442 [wrapper] Pilot exit status: 0
[2025-10-12 20:44:12] 2025-10-12 20:44:12,446 [wrapper] pandaids: 6839164526
[2025-10-12 20:44:12] 2025-10-12 20:44:12,455 [wrapper] cleanup supervisor_pilot 4084759 4053916
[2025-10-12 20:44:12] 2025-10-12 20:44:12,457 [wrapper] Test setup, not cleaning
[2025-10-12 20:44:12] 2025-10-12 20:44:12,458 [wrapper] apfmon messages muted
[2025-10-12 20:44:12] 2025-10-12 20:44:12,459 [wrapper] ==== wrapper stdout END ====
[2025-10-12 20:44:12] 2025-10-12 20:44:12,459 [wrapper] ==== wrapper stderr END ====
[2025-10-12 20:44:12]  *** Error codes and diagnostics ***
[2025-10-12 20:44:12]     "exeErrorCode": 0,
[2025-10-12 20:44:12]     "exeErrorDiag": "",
[2025-10-12 20:44:12]     "pilotErrorCode": 0,
[2025-10-12 20:44:12]     "pilotErrorDiag": "",
[2025-10-12 20:44:12]  *** Listing of results directory ***
[2025-10-12 20:44:12] total 414000
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc    557409 Oct 12 00:05 pilot3.tar.gz
[2025-10-12 20:44:12] -rwx------ 1 boinc boinc     36292 Oct 12 00:43 runpilot2-wrapper.sh
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc      5112 Oct 12 00:43 queuedata.json
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc       100 Oct 12 20:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 20:44:12] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 20:15 run_atlas
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc       105 Oct 12 20:15 job.xml
[2025-10-12 20:44:12] -rw-r--r-- 2 boinc boinc    569675 Oct 12 20:15 input.tar.gz
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc      6938 Oct 12 20:15 init_data.xml
[2025-10-12 20:44:12] -rw-r--r-- 2 boinc boinc 224538319 Oct 12 20:15 EVNT.46676267._003109.pool.root.1
[2025-10-12 20:44:12] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:15 start_atlas.sh
[2025-10-12 20:44:12] drwxrwx--x 2 boinc boinc      4096 Oct 12 20:15 shared
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc         0 Oct 12 20:15 boinc_lockfile
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc      2550 Oct 12 20:15 pandaJob.out
[2025-10-12 20:44:12] -rw------- 1 boinc boinc    975536 Oct 12 20:15 agis_schedconf.cvmfs.json
[2025-10-12 20:44:12] -rw------- 1 boinc boinc   1560580 Oct 12 20:15 agis_ddmendpoints.agis.ALL.json
[2025-10-12 20:44:12] drwx------ 5 boinc boinc      4096 Oct 12 20:15 pilot3
[2025-10-12 20:44:12] -rw------- 1 boinc boinc 194207158 Oct 12 20:43 HITS.46676269._068017.pool.root.1
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc       529 Oct 12 20:43 boinc_task_state.xml
[2025-10-12 20:44:12] -rw------- 1 boinc boinc      1017 Oct 12 20:43 memory_monitor_summary.json
[2025-10-12 20:44:12] -rw------- 1 boinc boinc    349184 Oct 12 20:43 log.46676269._068017.job.log.tgz.1
[2025-10-12 20:44:12] -rw------- 1 boinc boinc      7733 Oct 12 20:43 heartbeat.json
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc      8192 Oct 12 20:44 boinc_mmap_file
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc        27 Oct 12 20:44 wrapper_checkpoint.txt
[2025-10-12 20:44:12] -rw------- 1 boinc boinc       822 Oct 12 20:44 pilotlog.txt
[2025-10-12 20:44:12] -rw------- 1 boinc boinc        95 Oct 12 20:44 pilot_heartbeat.json
[2025-10-12 20:44:12] -rw------- 1 boinc boinc    295545 Oct 12 20:44 log.46676269._068017.job.log.1
[2025-10-12 20:44:12] -rw------- 1 boinc boinc       357 Oct 12 20:44 output.list
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc       620 Oct 12 20:44 runtime_log
[2025-10-12 20:44:12] -rw------- 1 boinc boinc    665600 Oct 12 20:44 result.tar.gz
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc      8762 Oct 12 20:44 runtime_log.err
[2025-10-12 20:44:12] -rw------- 1 boinc boinc       641 Oct 12 20:44 CbGMDm5LzR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmc7hNDmMCY9Wo.diag
[2025-10-12 20:44:12] -rw-r--r-- 1 boinc boinc     21763 Oct 12 20:44 stderr.txt
[2025-10-12 20:44:12] HITS file was successfully produced:
[2025-10-12 20:44:12] -rw------- 1 boinc boinc 194207158 Oct 12 20:43 shared/HITS.pool.root.1
[2025-10-12 20:44:12]  *** Contents of shared directory: ***
[2025-10-12 20:44:12] total 410164
[2025-10-12 20:44:12] -rw-r--r-- 2 boinc boinc    569675 Oct 12 20:15 input.tar.gz
[2025-10-12 20:44:12] -rw-r--r-- 2 boinc boinc 224538319 Oct 12 20:15 ATLAS.root_0
[2025-10-12 20:44:12] -rw-r--r-- 2 boinc boinc     15120 Oct 12 20:15 start_atlas.sh
[2025-10-12 20:44:12] -rw------- 1 boinc boinc 194207158 Oct 12 20:43 HITS.pool.root.1
[2025-10-12 20:44:12] -rw------- 1 boinc boinc    665600 Oct 12 20:44 result.tar.gz
20:44:13 (4049493): run_atlas exited; CPU time 15193.448677
20:44:13 (4049493): called boinc_finish(0)

</stderr_txt>
]]>

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