Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-12 16:56:22 (6576): vboxwrapper version 26210
2025-10-12 16:56:22 (6576): BOINC client version: 8.2.4
2025-10-12 16:56:22 (6576): Detected: VirtualBox VboxManage Interface (Version: 7.1.10)
2025-10-12 16:56:23 (6576): Successfully copied 'init_data.xml' to the shared directory.
2025-10-12 16:56:23 (6576): Create VM. (boinc_220b4348d9084f59, slot#3)
2025-10-12 16:56:23 (6576): Setting Memory Size for VM. (4800MB)
2025-10-12 16:56:24 (6576): Setting CPU Count for VM. (8)
2025-10-12 16:56:24 (6576): Setting Chipset Options for VM.
2025-10-12 16:56:25 (6576): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-12 16:56:25 (6576): Setting Boot Options for VM.
2025-10-12 16:56:26 (6576): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-12 16:56:26 (6576): Enabling VM Network Access.
2025-10-12 16:56:27 (6576): Disabling USB Support for VM.
2025-10-12 16:56:27 (6576): Disabling COM Port Support for VM.
2025-10-12 16:56:27 (6576): Disabling LPT Port Support for VM.
2025-10-12 16:56:27 (6576): Disabling Audio Support for VM.
2025-10-12 16:56:28 (6576): Disabling Clipboard Support for VM.
2025-10-12 16:56:28 (6576): Disabling Drag and Drop Support for VM.
2025-10-12 16:56:28 (6576): Adding storage controller(s) to VM.
2025-10-12 16:56:28 (6576): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-12 16:56:29 (6576): Adding VirtualBox Guest Additions to VM.
2025-10-12 16:56:29 (6576): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-12 16:56:29 (6576): forwarding host port 60803 to guest port 80
2025-10-12 16:56:30 (6576): Enabling remote desktop for VM.
2025-10-12 16:56:30 (6576): Required extension pack not installed, remote desktop not enabled.
2025-10-12 16:56:30 (6576): Enabling shared directory for VM.
2025-10-12 16:56:30 (6576): Starting VM using VBoxManage interface. (boinc_220b4348d9084f59, slot#3)
2025-10-12 16:56:37 (6576): Successfully started VM. (PID = '8892')
2025-10-12 16:56:37 (6576): Reporting VM Process ID to BOINC.
2025-10-12 16:56:37 (6576): Guest Log: BIOS: VirtualBox 7.1.10
2025-10-12 16:56:37 (6576): Guest Log: CPUID EDX: 0x178bfbff
2025-10-12 16:56:37 (6576): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-12 16:56:37 (6576): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-12 16:56:37 (6576): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-12 16:56:37 (6576): Detected: Web Application Enabled (http://localhost:60803)
2025-10-12 16:56:37 (6576): Preference change detected
2025-10-12 16:56:37 (6576): Setting CPU throttle for VM. (100%)
2025-10-12 16:56:37 (6576): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-12 16:56:39 (6576): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-12 16:56:39 (6576): Guest Log: BIOS: Booting from Hard Disk...
2025-10-12 16:56:42 (6576): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-12 16:56:42 (6576): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-12 16:56:42 (6576): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-12 16:56:48 (6576): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-12 16:56:48 (6576): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-12 16:56:55 (6576): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-12 16:56:55 (6576): Guest Log: 00:00:00.000210 main     Log opened 2025-10-12T16:56:54.267129000Z
2025-10-12 16:56:55 (6576): Guest Log: 00:00:00.000364 main     OS Product: Linux
2025-10-12 16:56:55 (6576): Guest Log: 00:00:00.000415 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-12 16:56:55 (6576): Guest Log: 00:00:00.000454 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-12 16:56:55 (6576): Guest Log: 00:00:00.000501 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-12 16:56:55 (6576): Guest Log: 00:00:00.000503 main     Process ID: 1379
2025-10-12 16:56:55 (6576): Guest Log: 00:00:00.000503 main     Package type: LINUX_64BITS_GENERIC
2025-10-12 16:56:55 (6576): Guest Log: 00:00:00.001602 main     5.2.32 r132073 started. Verbose level = 0
2025-10-12 16:56:56 (6576): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-12 16:56:56 (6576): Guest Log: [INFO] Mounting shared directory
2025-10-12 16:56:56 (6576): Guest Log: [INFO] Checking for init_data.xml
2025-10-12 16:57:02 (6576): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-12 16:57:02 (6576): Guest Log: [INFO] Detected branch: prod
2025-10-12 16:57:02 (6576): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-12 16:57:02 (6576): Guest Log: Copying input files
2025-10-12 16:57:04 (6576): Guest Log: Copied input files into RunAtlas.
2025-10-12 16:57:04 (6576): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-12 16:57:04 (6576): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-12 16:57:04 (6576): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-12 16:57:04 (6576): Guest Log: Further information can be found at the LHC@home message board.
2025-10-12 16:57:05 (6576): Guest Log: 00:00:10.007318 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 757 871 000ns (GuestNow=1 760 281 025 512 633 000 ns GuestLast=1 760 288 214 270 504 000 ns fSetTimeLastLoop=true )
2025-10-12 16:57:15 (6576): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-12 16:57:16 (6576): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-12 16:57:16 (6576): Guest Log: 2.6.3.0 1659 0 30172 151623 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-12 16:57:16 (6576): Guest Log: copied the webapp to /var/www
2025-10-12 16:57:16 (6576): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-12 16:57:16 (6576): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-12 16:57:17 (6576): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-12 16:57:17 (6576): Guest Log:  *** Starting ATLAS job. (PandaID=6839866165 taskID=46676269) ***
2025-10-12 18:36:45 (6576): Status Report: Elapsed Time: '6000.000000'
2025-10-12 18:36:45 (6576): Status Report: CPU Time: '44081.406250'
2025-10-12 19:38:39 (6576): Guest Log:  *** Job finished ***
2025-10-12 19:38:39 (6576): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:07,890 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:07,890 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:28,896 | INFO     | [monitor] cgroup control has ended
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:30,962 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140232319678272)>', '<ExcThread(monitor, started 140231143581440)>']
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:31,135 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:31,135 | INFO     | [monitor] control thread has ended
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:35,965 | INFO     | all workflow threads have been joined
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:35,965 | INFO     | end of generic workflow (traces error code: 0)
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:35,966 | INFO     | traces error code: 0
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:35,966 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,083 [wrapper] ==== pilot stdout END ====
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,092 [wrapper] ==== wrapper stdout RESUME ====
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,100 [wrapper] pilotpid: 6082
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,107 [wrapper] Pilot exit status: 0
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,250 [wrapper] pandaids: 6839866165
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,298 [wrapper] cleanup supervisor_pilot  6747 6083
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,307 [wrapper] Test setup, not cleaning
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,314 [wrapper] apfmon messages muted
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,319 [wrapper] ==== wrapper stdout END ====
2025-10-12 19:38:39 (6576): Guest Log: 2025-10-12 17:38:36,325 [wrapper] ==== wrapper stderr END ====
2025-10-12 19:38:39 (6576): Guest Log:  *** Error codes and diagnostics ***
2025-10-12 19:38:39 (6576): Guest Log:     "exeErrorCode": 0,
2025-10-12 19:38:39 (6576): Guest Log:     "exeErrorDiag": "",
2025-10-12 19:38:39 (6576): Guest Log:     "pilotErrorCode": 0,
2025-10-12 19:38:39 (6576): Guest Log:     "pilotErrorDiag": "",
2025-10-12 19:38:39 (6576): Guest Log:  *** Listing of results directory ***
2025-10-12 19:38:39 (6576): Guest Log: total 201512
2025-10-12 19:38:39 (6576): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 12 09:51 pilot3.tar.gz
2025-10-12 19:38:39 (6576): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 12 10:10 queuedata.json
2025-10-12 19:38:39 (6576): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 12 10:11 runpilot2-wrapper.sh
2025-10-12 19:38:39 (6576): Guest Log: -rwxr-xr-x. 1 atlas atlas      8499 Oct 12 14:57 init_data.xml
2025-10-12 19:38:39 (6576): Guest Log: -rwxr-xr-x. 1 atlas atlas    569684 Oct 12 14:57 input.tar.gz
2025-10-12 19:38:39 (6576): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 12 14:57 start_atlas.sh
2025-10-12 19:38:39 (6576): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 12 14:57 EVNT.46676267._003611.pool.root.1 -> /data/./ATLAS.root_0
2025-10-12 19:38:39 (6576): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 12 14:57 pandaJob.out
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas    975528 Oct 12 14:58 agis_schedconf.cvmfs.json
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 12 14:58 agis_ddmendpoints.agis.ALL.json
2025-10-12 19:38:39 (6576): Guest Log: drwx------. 5 atlas atlas      4096 Oct 12 14:58 pilot3
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas 199200252 Oct 12 17:36 HITS.46676269._075883.pool.root.1
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas        95 Oct 12 17:37 pilot_heartbeat.json
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 12 17:37 memory_monitor_summary.json
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas    395960 Oct 12 17:37 log.46676269._075883.job.log.tgz.1
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas      7789 Oct 12 17:37 heartbeat.json
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas      4991 Oct 12 17:38 pilotlog.txt
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas   1260645 Oct 12 17:38 log.46676269._075883.job.log.1
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas       357 Oct 12 17:38 output.list
2025-10-12 19:38:39 (6576): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 12 17:38 runtime_log
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas   1679360 Oct 12 17:38 result.tar.gz
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas       653 Oct 12 17:38 T8yNDm9D8R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6cTMDmhAv16n.diag
2025-10-12 19:38:39 (6576): Guest Log: -rw-r--r--. 1 atlas atlas      8669 Oct 12 17:38 runtime_log.err
2025-10-12 19:38:39 (6576): Guest Log: Looking for outputfile HITS.46676269._075883.pool.root.1
2025-10-12 19:38:39 (6576): Guest Log: HITS file was successfully produced
2025-10-12 19:38:39 (6576): Guest Log: -rw-------. 1 atlas atlas 199200252 Oct 12 17:36 /home/atlas/RunAtlas/HITS.46676269._075883.pool.root.1
2025-10-12 19:38:40 (6576): Guest Log: Successfully finished the ATLAS job!
2025-10-12 19:38:40 (6576): Guest Log: Copying the results back to the shared directory!
2025-10-12 19:38:40 (6576): Guest Log:  *** Contents of shared directory: ***
2025-10-12 19:38:40 (6576): Guest Log: total 411988
2025-10-12 19:38:40 (6576): Guest Log: -rwxrwxrwx. 1 root root 220393441 Oct 12 14:56 ATLAS.root_0
2025-10-12 19:38:40 (6576): Guest Log: -rwxrwxrwx. 1 root root 199200252 Oct 12 17:38 HITS.pool.root.1
2025-10-12 19:38:40 (6576): Guest Log: -rwxrwxrwx. 1 root root      8499 Oct 12 14:56 init_data.xml
2025-10-12 19:38:40 (6576): Guest Log: -rwxrwxrwx. 1 root root    569684 Oct 12 14:26 input.tar.gz
2025-10-12 19:38:40 (6576): Guest Log: -rwxrwxrwx. 1 root root   1679360 Oct 12 17:38 result.tar.gz
2025-10-12 19:38:40 (6576): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 14:26 start_atlas.sh
2025-10-12 19:38:40 (6576): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-12 19:38:40 (6576): VM Completion File Detected.
2025-10-12 19:38:40 (6576): Powering off VM.
2025-10-12 19:38:40 (6576): Successfully stopped VM.
2025-10-12 19:38:40 (6576): Deregistering VM. (boinc_220b4348d9084f59, slot#3)
2025-10-12 19:38:40 (6576): Removing network bandwidth throttle group from VM.
2025-10-12 19:38:41 (6576): Removing VM from VirtualBox.
2025-10-12 19:38:46 (6576): called boinc_finish(0)

</stderr_txt>
]]>

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