Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:29:40 (14248): wrapper (7.7.26015): starting
10:29:40 (14248): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 10:29:40] Arguments: --nthreads 12
[2025-10-12 10:29:40] Threads: 12
[2025-10-12 10:29:40] Checking for CVMFS
[2025-10-12 10:29:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:29:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:29:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:29:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:29:41] 2.11.2.0 2914 223003 97968 151623 3 59 15719797 20275201 1 130560 1 108587437 99.983 13259549 12350 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:29:41] CVMFS is ok
[2025-10-12 10:29:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:29:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:29:41] Further information can be found at the LHC@home message board.
[2025-10-12 10:29:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:29:41] Checking for apptainer binary...
[2025-10-12 10:29:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:29:41] Running /usr/bin/apptainer --version
[2025-10-12 10:29:41] apptainer version 1.3.2-1.el7
[2025-10-12 10:29:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:29:42] c-205-5.aglt2.org
[2025-10-12 10:29:42] apptainer works
[2025-10-12 10:29:42] Set ATHENA_PROC_NUMBER=12
[2025-10-12 10:29:42] Set ATHENA_CORE_NUMBER=12
[2025-10-12 10:29:42] Starting ATLAS job with PandaID=6839989627
[2025-10-12 10:29:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:41:21]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:41:21]  replicas=None
[2025-10-12 11:41:21]  scope=mc23_13p6TeV
[2025-10-12 11:41:21]  status=None
[2025-10-12 11:41:21]  status_code=0
[2025-10-12 11:41:21]  storage_token=
[2025-10-12 11:41:21]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839989627/log.46676269._078959.job.log.tgz.1
[2025-10-12 11:41:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/34/log.46676269._078959.job.log.tgz.1
[2025-10-12 11:41:21]  workdir=None
[2025-10-12 11:41:21] ]
[2025-10-12 11:41:21] 2025-10-12 15:40:40,935 | INFO     | transferring file log.46676269._078959.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839989627/log.46676269._078959.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 11:41:21] 2025-10-12 15:40:40,935 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839989627/log.46676269._078959.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._078959.job
[2025-10-12 11:41:21] 2025-10-12 15:40:40,958 | INFO     | adding to output.list: log.46676269._078959.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/34/log.46676269._078959.job.log.tg
[2025-10-12 11:41:21] 2025-10-12 15:40:40,959 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 11:41:21] 2025-10-12 15:40:40,959 | INFO     | summary of transferred files:
[2025-10-12 11:41:21] 2025-10-12 15:40:40,960 | INFO     |  -- lfn=log.46676269._078959.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 11:41:21] 2025-10-12 15:40:40,960 | INFO     | stage-out finished correctly
[2025-10-12 11:41:21] 2025-10-12 15:40:42,186 | INFO     | time since job start (4245s) is within the limit (172800.0s)
[2025-10-12 11:41:21] 2025-10-12 15:40:42,585 | INFO     | monitor loop #316: job 0:6839989627 is in state 'finished'
[2025-10-12 11:41:21] 2025-10-12 15:40:42,585 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:41:21] 2025-10-12 15:40:43,585 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:41:21] 2025-10-12 15:40:43,791 | INFO     | job 6839989627 has state=finished
[2025-10-12 11:41:21] 2025-10-12 15:40:43,791 | INFO     | preparing for final server update for job 6839989627 in state='finished'
[2025-10-12 11:41:21] 2025-10-12 15:40:43,792 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:41:21] 2025-10-12 15:40:43,792 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:41:21] 2025-10-12 15:40:43,792 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:41:21] 2025-10-12 15:40:43,792 | INFO     | job 6839989627 has finished - writing final server update
[2025-10-12 11:41:21] 2025-10-12 15:40:43,793 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:41:21] 2025-10-12 15:40:43,794 | INFO     | executing command: lscpu
[2025-10-12 11:41:21] 2025-10-12 15:40:43,821 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:41:21] 2025-10-12 15:40:44,192 | INFO     | time since job start (4247s) is within the limit (172800.0s)
[2025-10-12 11:41:21] 2025-10-12 15:40:45,093 | INFO     | monitor loop #317: job 0:6839989627 is in state 'finished'
[2025-10-12 11:41:21] 2025-10-12 15:40:45,094 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:41:21] 2025-10-12 15:40:46,197 | INFO     | time since job start (4249s) is within the limit (172800.0s)
[2025-10-12 11:41:21] 2025-10-12 15:40:47,596 | INFO     | monitor loop #318: job 0:6839989627 is in state 'finished'
[2025-10-12 11:41:21] 2025-10-12 15:40:47,596 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:41:21] 2025-10-12 15:40:48,202 | INFO     | time since job start (4251s) is within the limit (172800.0s)
[2025-10-12 11:41:21] 2025-10-12 15:40:48,597 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 11:41:21] 2025-10-12 15:40:48,601 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.6666666666667
[2025-10-12 11:41:21] 2025-10-12 15:40:48,603 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839989627/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:41:21] 2025-10-12 15:40:48,604 | INFO     | extracted standard info from prmon json
[2025-10-12 11:41:21] 2025-10-12 15:40:48,604 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:41:21] 2025-10-12 15:40:48,605 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:41:21] 2025-10-12 15:40:48,605 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:41:21] 2025-10-12 15:40:48,605 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:41:21] 2025-10-12 15:40:48,607 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:41:21] 2025-10-12 15:40:48,608 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 11:41:21] 2025-10-12 15:40:48,608 | INFO     | sum of deviations: -7097869231.999999
[2025-10-12 11:41:21] 2025-10-12 15:40:48,608 | INFO     | mean x: 1760281622.0
[2025-10-12 11:41:21] 2025-10-12 15:40:48,608 | INFO     | mean y: 2841626.619047619
[2025-10-12 11:41:21] 2025-10-12 15:40:48,608 | INFO     | -- intersect: 161185944416.83023
[2025-10-12 11:41:21] 2025-10-12 15:40:48,609 | INFO     | intersect: 161185944416.83023
[2025-10-12 11:41:21] 2025-10-12 15:40:48,609 | INFO     | chi2: 0.06850921718602435
[2025-10-12 11:41:21] 2025-10-12 15:40:48,609 | INFO     | -- intersect: 161185944416.83023
[2025-10-12 11:41:21] 2025-10-12 15:40:48,609 | INFO     | current memory leak: -91.57 B/s (using 63 data points, chi2=0.07)
[2025-10-12 11:41:21] 2025-10-12 15:40:48,609 | INFO     | could have reported an average CPU frequency of 2037 MHz (6 samples)
[2025-10-12 11:41:21] 2025-10-12 15:40:48,609 | INFO     | ..............................
[2025-10-12 11:41:21] 2025-10-12 15:40:48,610 | INFO     | . Timing measurements:
[2025-10-12 11:41:21] 2025-10-12 15:40:48,610 | INFO     | . get job = 0 s
[2025-10-12 11:41:21] 2025-10-12 15:40:48,610 | INFO     | . initial setup = 2 s
[2025-10-12 11:41:21] 2025-10-12 15:40:48,610 | INFO     | . payload setup = 7 s
[2025-10-12 11:41:21] 2025-10-12 15:40:48,610 | INFO     | . stage-in = 0 s
[2025-10-12 11:41:21] 2025-10-12 15:40:48,610 | INFO     | . payload execution = 4215 s
[2025-10-12 11:41:21] 2025-10-12 15:40:48,610 | INFO     | . stage-out = 0 s
[2025-10-12 11:41:21] 2025-10-12 15:40:48,610 | INFO     | . log creation = 0 s
[2025-10-12 11:41:21] 2025-10-12 15:40:48,610 | INFO     | ..............................
[2025-10-12 11:41:21] 2025-10-12 15:40:48,691 | INFO     | 
[2025-10-12 11:41:21] 2025-10-12 15:40:48,691 | INFO     | job summary report
[2025-10-12 11:41:21] 2025-10-12 15:40:48,691 | INFO     | --------------------------------------------------
[2025-10-12 11:41:21] 2025-10-12 15:40:48,691 | INFO     | PanDA job id: 6839989627
[2025-10-12 11:41:21] 2025-10-12 15:40:48,691 | INFO     | task id: 46676269
[2025-10-12 11:41:21] 2025-10-12 15:40:48,692 | INFO     | errors: (none)
[2025-10-12 11:41:21] 2025-10-12 15:40:48,692 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:41:21] 2025-10-12 15:40:48,692 | INFO     | pilot state: finished 
[2025-10-12 11:41:21] 2025-10-12 15:40:48,692 | INFO     | transexitcode: 0
[2025-10-12 11:41:21] 2025-10-12 15:40:48,692 | INFO     | exeerrorcode: 0
[2025-10-12 11:41:21] 2025-10-12 15:40:48,692 | INFO     | exeerrordiag: 
[2025-10-12 11:41:21] 2025-10-12 15:40:48,693 | INFO     | exitcode: 0
[2025-10-12 11:41:21] 2025-10-12 15:40:48,693 | INFO     | exitmsg: OK
[2025-10-12 11:41:21] 2025-10-12 15:40:48,693 | INFO     | cpuconsumptiontime: 45724 s
[2025-10-12 11:41:21] 2025-10-12 15:40:48,693 | INFO     | nevents: 400
[2025-10-12 11:41:21] 2025-10-12 15:40:48,693 | INFO     | neventsw: 0
[2025-10-12 11:41:21] 2025-10-12 15:40:48,693 | INFO     | pid: 25381
[2025-10-12 11:41:21] 2025-10-12 15:40:48,694 | INFO     | pgrp: 25381
[2025-10-12 11:41:21] 2025-10-12 15:40:48,694 | INFO     | corecount: 12
[2025-10-12 11:41:21] 2025-10-12 15:40:48,694 | INFO     | event service: False
[2025-10-12 11:41:21] 2025-10-12 15:40:48,694 | INFO     | sizes: {0: 2348856, 5: 2349118, 11: 2349174, 4225: 2375071, 4226: 2375070, 4227: 2384124, 4230: 2384308, 4235: 2384502}
[2025-10-12 11:41:21] 2025-10-12 15:40:48,694 | INFO     | --------------------------------------------------
[2025-10-12 11:41:21] 2025-10-12 15:40:48,694 | INFO     | 
[2025-10-12 11:41:21] 2025-10-12 15:40:48,694 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 11:41:21] 2025-10-12 15:40:48,718 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,719 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,720 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,720 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,720 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,720 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,720 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,721 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,721 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,721 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,721 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,721 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:41:21] 2025-10-12 15:40:48,722 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,722 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:41:21] 2025-10-12 15:40:48,722 | INFO     | job 6839989627 has completed (purged errors)
[2025-10-12 11:41:21] 2025-10-12 15:40:48,722 | INFO     | overall cleanup function is called
[2025-10-12 11:41:21] 2025-10-12 15:40:49,730 | INFO     | --- collectZombieJob: --- 10, [25381]
[2025-10-12 11:41:21] 2025-10-12 15:40:49,731 | INFO     | zombie collector waiting for pid 25381
[2025-10-12 11:41:21] 2025-10-12 15:40:49,731 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:41:21] 2025-10-12 15:40:49,731 | INFO     | collected zombie processes
[2025-10-12 11:41:21] 2025-10-12 15:40:49,731 | INFO     | will attempt to kill all subprocesses of pid=25381
[2025-10-12 11:41:21] 2025-10-12 15:40:49,823 | INFO     | process IDs to be killed: [25381] (in reverse order)
[2025-10-12 11:41:21] 2025-10-12 15:40:49,873 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:41:21] 2025-10-12 15:40:49,874 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:41:21] 2025-10-12 15:40:49,877 | INFO     | did not find any defunct processes belonging to 25381
[2025-10-12 11:41:21] 2025-10-12 15:40:49,880 | INFO     | did not find any defunct processes belonging to 25381
[2025-10-12 11:41:21] 2025-10-12 15:40:49,880 | INFO     | ready for new job
[2025-10-12 11:41:21] 2025-10-12 15:40:49,880 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:41:21] 2025-10-12 15:40:49,881 | INFO     | ***************************************
[2025-10-12 11:41:21] 2025-10-12 15:40:49,882 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:41:21] 2025-10-12 15:40:49,882 | INFO     | ***************************************
[2025-10-12 11:41:21] 2025-10-12 15:40:49,882 | INFO     | 
[2025-10-12 11:41:21] 2025-10-12 15:40:49,882 | INFO     | architecture information:
[2025-10-12 11:41:21] 2025-10-12 15:40:49,883 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:41:21] 2025-10-12 15:40:49,899 | INFO     | cat /etc/os-release:
[2025-10-12 11:41:21] NAME="CentOS Linux"
[2025-10-12 11:41:21] VERSION="7 (Core)"
[2025-10-12 11:41:21] ID="centos"
[2025-10-12 11:41:21] ID_LIKE="rhel fedora"
[2025-10-12 11:41:21] VERSION_ID="7"
[2025-10-12 11:41:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:41:21] ANSI_COLOR="0;31"
[2025-10-12 11:41:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:41:21] HOME_URL="https://www.centos.org/"
[2025-10-12 11:41:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:41:21] 
[2025-10-12 11:41:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:41:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:41:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:41:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:41:21] 
[2025-10-12 11:41:21] 2025-10-12 15:40:49,899 | INFO     | ***************************************
[2025-10-12 11:41:21] 2025-10-12 15:40:50,402 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:41:21] 2025-10-12 15:40:50,419 | INFO     | sufficient remaining disk space (29365370880 B)
[2025-10-12 11:41:21] 2025-10-12 15:40:50,419 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:41:21] 2025-10-12 15:40:50,419 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:41:21] 2025-10-12 15:40:50,419 | INFO     | update_server=False
[2025-10-12 11:41:21] 2025-10-12 15:40:50,420 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:41:21] 2025-10-12 15:40:50,420 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:41:21] 2025-10-12 15:40:50,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:41:21] 2025-10-12 15:40:50,541 | INFO     | all data control threads have been joined
[2025-10-12 11:41:21] 2025-10-12 15:40:50,737 | INFO     | all job control threads have been joined
[2025-10-12 11:41:21] 2025-10-12 15:40:50,983 | INFO     | all payload control threads have been joined
[2025-10-12 11:41:21] 2025-10-12 15:40:51,105 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:41:21] 2025-10-12 15:40:51,105 | INFO     | aborting loop
[2025-10-12 11:41:21] 2025-10-12 15:40:51,425 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:51,426 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:51,448 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:51,546 | INFO     | [data] control thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:51,555 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:41:21] 2025-10-12 15:40:51,604 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:51,743 | INFO     | [job] control thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:51,988 | INFO     | [payload] control thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:52,008 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:52,111 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:52,165 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:52,458 | INFO     | [job] validate thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:52,537 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:52,538 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:53,561 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:40:54,426 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:41:00,530 | INFO     | job.realtimelogging is not enabled
[2025-10-12 11:41:21] 2025-10-12 15:41:01,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:41:21] 2025-10-12 15:41:03,794 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:41:21] 2025-10-12 15:41:03,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140363113654080)>', '<ExcThread(monitor, started 140362542737152)>']
[2025-10-12 11:41:21] 2025-10-12 15:41:08,825 | INFO     | all workflow threads have been joined
[2025-10-12 11:41:21] 2025-10-12 15:41:08,825 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:41:21] 2025-10-12 15:41:08,826 | INFO     | traces error code: 0
[2025-10-12 11:41:21] 2025-10-12 15:41:08,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:41:21] 2025-10-12 15:41:21,407 | INFO     | PID=17932 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 11:41:21] 2025-10-12 15:41:21,408 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:41:21] 2025-10-12 15:41:21,408 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:41:21] 2025-10-12 15:41:21,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:41:21] 2025-10-12 15:41:21,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:41:21] 2025-10-12 15:41:21,408 | INFO     | [monitor] control thread has ended
[2025-10-12 11:41:21] 2025-10-12 15:41:21,494 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:41:21] 2025-10-12 15:41:21,498 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:41:21] 2025-10-12 15:41:21,502 [wrapper] pilotpid: 17932
[2025-10-12 11:41:21] 2025-10-12 15:41:21,505 [wrapper] Pilot exit status: 0
[2025-10-12 11:41:21] 2025-10-12 15:41:21,520 [wrapper] pandaids: 6839989627
[2025-10-12 11:41:21] 2025-10-12 15:41:21,564 [wrapper] cleanup supervisor_pilot  6363 17933
[2025-10-12 11:41:21] 2025-10-12 15:41:21,568 [wrapper] Test setup, not cleaning
[2025-10-12 11:41:21] 2025-10-12 15:41:21,571 [wrapper] apfmon messages muted
[2025-10-12 11:41:21] 2025-10-12 15:41:21,575 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:41:21] 2025-10-12 15:41:21,579 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:41:21]  *** Error codes and diagnostics ***
[2025-10-12 11:41:21]     "exeErrorCode": 0,
[2025-10-12 11:41:21]     "exeErrorDiag": "",
[2025-10-12 11:41:21]     "pilotErrorCode": 0,
[2025-10-12 11:41:21]     "pilotErrorDiag": "",
[2025-10-12 11:41:21]  *** Listing of results directory ***
[2025-10-12 11:41:21] total 408480
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 11:41:21] -rwx------ 1 boincer umatlas     36292 Oct 12 08:58 runpilot2-wrapper.sh
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:58 queuedata.json
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:41:21] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:29 run_atlas
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:29 job.xml
[2025-10-12 11:41:21] -rw-r--r-- 2 boincer umatlas 219984459 Oct 12 10:29 EVNT.46676267._003843.pool.root.1
[2025-10-12 11:41:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:29 start_atlas.sh
[2025-10-12 11:41:21] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:29 shared
[2025-10-12 11:41:21] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 10:29 input.tar.gz
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:29 boinc_lockfile
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 10:29 pandaJob.out
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas    975528 Oct 12 10:29 agis_schedconf.cvmfs.json
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas   1560580 Oct 12 10:29 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:41:21] drwx------ 5 boincer umatlas      4096 Oct 12 10:29 pilot3
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 11:37 init_data.xml
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas 192424852 Oct 12 11:40 HITS.46676269._078959.pool.root.1
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas       529 Oct 12 11:40 boinc_task_state.xml
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas      1050 Oct 12 11:40 memory_monitor_summary.json
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas    368998 Oct 12 11:40 log.46676269._078959.job.log.tgz.1
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas      7854 Oct 12 11:40 heartbeat.json
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas        27 Oct 12 11:41 wrapper_checkpoint.txt
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 11:41 boinc_mmap_file
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas        95 Oct 12 11:41 pilot_heartbeat.json
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas       745 Oct 12 11:41 pilotlog.txt
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas    619269 Oct 12 11:41 log.46676269._078959.job.log.1
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas       357 Oct 12 11:41 output.list
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas       620 Oct 12 11:41 runtime_log
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas   1003520 Oct 12 11:41 result.tar.gz
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 11:41 runtime_log.err
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas       658 Oct 12 11:41 gHgLDmFqAS8n9Rq4apOajLDm4fhM0noT9bVof3QYDm0wTMDmquzXzn.diag
[2025-10-12 11:41:21] -rw-r--r-- 1 boincer umatlas     21835 Oct 12 11:41 stderr.txt
[2025-10-12 11:41:21] HITS file was successfully produced:
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas 192424852 Oct 12 11:40 shared/HITS.pool.root.1
[2025-10-12 11:41:21]  *** Contents of shared directory: ***
[2025-10-12 11:41:21] total 404308
[2025-10-12 11:41:21] -rw-r--r-- 2 boincer umatlas 219984459 Oct 12 10:29 ATLAS.root_0
[2025-10-12 11:41:21] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:29 start_atlas.sh
[2025-10-12 11:41:21] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 10:29 input.tar.gz
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas 192424852 Oct 12 11:40 HITS.pool.root.1
[2025-10-12 11:41:21] -rw------- 1 boincer umatlas   1003520 Oct 12 11:41 result.tar.gz
11:41:23 (14248): run_atlas exited; CPU time 45702.050581
11:41:23 (14248): called boinc_finish(0)

</stderr_txt>
]]>

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