Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:52:51 (16083): wrapper (7.7.26015): starting
19:52:51 (16083): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 19:52:51] Arguments: --nthreads 4
[2025-10-13 19:52:51] Threads: 4
[2025-10-13 19:52:51] Checking for CVMFS
[2025-10-13 19:52:51] No cvmfs_config command found, will try listing directly
[2025-10-13 19:52:51] CVMFS is ok
[2025-10-13 19:52:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 19:52:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 19:52:51] Further information can be found at the LHC@home message board.
[2025-10-13 19:52:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 19:52:51] Checking for apptainer binary...
[2025-10-13 19:52:51] which: no apptainer in ((null))
[2025-10-13 19:52:51] apptainer is not installed, using version from CVMFS
[2025-10-13 19:52:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 19:52:51] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut32.grid.cesnet.cz
[2025-10-13 19:52:51] apptainer works
[2025-10-13 19:52:51] Set ATHENA_PROC_NUMBER=4
[2025-10-13 19:52:51] Set ATHENA_CORE_NUMBER=4
[2025-10-13 19:52:51] Starting ATLAS job with PandaID=6839989526
[2025-10-13 19:52:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 23:31:35]  *** The last 200 lines of the pilot log: ***
[2025-10-13 23:31:35] 2025-10-13 21:30:54,309 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 23:31:35] 2025-10-13 21:30:54,309 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 23:31:35] 2025-10-13 21:30:54,314 | INFO     | fitting pss+swap vs Time
[2025-10-13 23:31:35] 2025-10-13 21:30:54,314 | INFO     | sum of square deviations: 3038856977.5
[2025-10-13 23:31:35] 2025-10-13 21:30:54,316 | INFO     | sum of deviations: -11820881888.999998
[2025-10-13 23:31:35] 2025-10-13 21:30:54,316 | INFO     | mean x: 1760384510.5
[2025-10-13 23:31:35] 2025-10-13 21:30:54,316 | INFO     | mean y: 2339769.6542056073
[2025-10-13 23:31:35] 2025-10-13 21:30:54,316 | INFO     | -- intersect: 6850078090.97689
[2025-10-13 23:31:35] 2025-10-13 21:30:54,317 | INFO     | intersect: 6850078090.97689
[2025-10-13 23:31:35] 2025-10-13 21:30:54,317 | INFO     | chi2: 2.275998116291168
[2025-10-13 23:31:35] 2025-10-13 21:30:54,317 | INFO     | sum of square deviations: 2830787960.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,319 | INFO     | sum of deviations: 2662725762.000001
[2025-10-13 23:31:35] 2025-10-13 21:30:54,319 | INFO     | mean x: 1760384358.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,319 | INFO     | mean y: 2350191.4066985645
[2025-10-13 23:31:35] 2025-10-13 21:30:54,319 | INFO     | -- intersect: -1653521193.98256
[2025-10-13 23:31:35] 2025-10-13 21:30:54,320 | INFO     | intersect: -1653521193.98256
[2025-10-13 23:31:35] 2025-10-13 21:30:54,320 | INFO     | chi2: 1.4127606116769456
[2025-10-13 23:31:35] 2025-10-13 21:30:54,320 | INFO     | current chi2=1.4127606116769456 (change=37.927865512512085 %)
[2025-10-13 23:31:35] 2025-10-13 21:30:54,321 | INFO     | sum of square deviations: 2632440055.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,322 | INFO     | sum of deviations: 2932584485.5
[2025-10-13 23:31:35] 2025-10-13 21:30:54,322 | INFO     | mean x: 1760384205.5
[2025-10-13 23:31:35] 2025-10-13 21:30:54,322 | INFO     | mean y: 2350398.8970588236
[2025-10-13 23:31:35] 2025-10-13 21:30:54,322 | INFO     | -- intersect: -1958748544.1778457
[2025-10-13 23:31:35] 2025-10-13 21:30:54,323 | INFO     | intersect: -1958748544.1778457
[2025-10-13 23:31:35] 2025-10-13 21:30:54,323 | INFO     | chi2: 1.413402827110792
[2025-10-13 23:31:35] 2025-10-13 21:30:54,323 | INFO     | current chi2=1.413402827110792 (change=-0.04545819217624139 %)
[2025-10-13 23:31:35] 2025-10-13 21:30:54,323 | INFO     | right removable region: 203
[2025-10-13 23:31:35] 2025-10-13 21:30:54,324 | INFO     | sum of square deviations: 2830787960.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,325 | INFO     | sum of deviations: -33418003259.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,325 | INFO     | mean x: 1760384663.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,326 | INFO     | mean y: 2355330.928229665
[2025-10-13 23:31:35] 2025-10-13 21:30:54,326 | INFO     | -- intersect: 20784039171.786316
[2025-10-13 23:31:35] 2025-10-13 21:30:54,326 | INFO     | intersect: 20784039171.786316
[2025-10-13 23:31:35] 2025-10-13 21:30:54,326 | INFO     | chi2: 1.0718154460190308
[2025-10-13 23:31:35] 2025-10-13 21:30:54,326 | INFO     | current chi2=1.0718154460190308 (change=52.90789397639758 %)
[2025-10-13 23:31:35] 2025-10-13 21:30:54,327 | INFO     | sum of square deviations: 2632440055.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,328 | INFO     | sum of deviations: -22102478310.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,329 | INFO     | mean x: 1760384815.5
[2025-10-13 23:31:35] 2025-10-13 21:30:54,329 | INFO     | mean y: 2346625.1274509802
[2025-10-13 23:31:35] 2025-10-13 21:30:54,329 | INFO     | -- intersect: 14782879662.50448
[2025-10-13 23:31:35] 2025-10-13 21:30:54,329 | INFO     | intersect: 14782879662.50448
[2025-10-13 23:31:35] 2025-10-13 21:30:54,329 | INFO     | chi2: 0.9889116188941218
[2025-10-13 23:31:35] 2025-10-13 21:30:54,330 | INFO     | current chi2=0.9889116188941218 (change=7.734897592009227 %)
[2025-10-13 23:31:35] 2025-10-13 21:30:54,330 | INFO     | left removable region: 20
[2025-10-13 23:31:35] 2025-10-13 21:30:54,330 | INFO     | sum of square deviations: 1900284932.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,331 | INFO     | sum of deviations: 547580713.0000001
[2025-10-13 23:31:35] 2025-10-13 21:30:54,332 | INFO     | mean x: 1760384785.0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,332 | INFO     | mean y: 2351053.612021858
[2025-10-13 23:31:35] 2025-10-13 21:30:54,332 | INFO     | -- intersect: -504916430.0648165
[2025-10-13 23:31:35] 2025-10-13 21:30:54,332 | INFO     | intersect: -504916430.0648165
[2025-10-13 23:31:35] 2025-10-13 21:30:54,332 | INFO     | chi2: 0.0026291628675987
[2025-10-13 23:31:35] 2025-10-13 21:30:54,333 | INFO     | -- intersect: -504916430.0648165
[2025-10-13 23:31:35] 2025-10-13 21:30:54,333 | INFO     | current memory leak: 0.29 B/s (using 183 data points, chi2=0.00)
[2025-10-13 23:31:35] 2025-10-13 21:30:54,333 | INFO     | could have reported an average CPU frequency of 2602 MHz (11 samples)
[2025-10-13 23:31:35] 2025-10-13 21:30:54,333 | INFO     | ..............................
[2025-10-13 23:31:35] 2025-10-13 21:30:54,334 | INFO     | . Timing measurements:
[2025-10-13 23:31:35] 2025-10-13 21:30:54,334 | INFO     | . get job = 0 s
[2025-10-13 23:31:35] 2025-10-13 21:30:54,334 | INFO     | . initial setup = 1 s
[2025-10-13 23:31:35] 2025-10-13 21:30:54,334 | INFO     | . payload setup = 6 s
[2025-10-13 23:31:35] 2025-10-13 21:30:54,334 | INFO     | . stage-in = 0 s
[2025-10-13 23:31:35] 2025-10-13 21:30:54,334 | INFO     | . payload execution = 13029 s
[2025-10-13 23:31:35] 2025-10-13 21:30:54,334 | INFO     | . stage-out = 1 s
[2025-10-13 23:31:35] 2025-10-13 21:30:54,334 | INFO     | . log creation = 0 s
[2025-10-13 23:31:35] 2025-10-13 21:30:54,334 | INFO     | ..............................
[2025-10-13 23:31:35] 2025-10-13 21:30:54,445 | INFO     | 
[2025-10-13 23:31:35] 2025-10-13 21:30:54,445 | INFO     | job summary report
[2025-10-13 23:31:35] 2025-10-13 21:30:54,445 | INFO     | --------------------------------------------------
[2025-10-13 23:31:35] 2025-10-13 21:30:54,446 | INFO     | PanDA job id: 6839989526
[2025-10-13 23:31:35] 2025-10-13 21:30:54,446 | INFO     | task id: 46676269
[2025-10-13 23:31:35] 2025-10-13 21:30:54,446 | INFO     | errors: (none)
[2025-10-13 23:31:35] 2025-10-13 21:30:54,446 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 23:31:35] 2025-10-13 21:30:54,446 | INFO     | pilot state: finished 
[2025-10-13 23:31:35] 2025-10-13 21:30:54,446 | INFO     | transexitcode: 0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,446 | INFO     | exeerrorcode: 0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,446 | INFO     | exeerrordiag: 
[2025-10-13 23:31:35] 2025-10-13 21:30:54,447 | INFO     | exitcode: 0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,447 | INFO     | exitmsg: OK
[2025-10-13 23:31:35] 2025-10-13 21:30:54,447 | INFO     | cpuconsumptiontime: 50507 s
[2025-10-13 23:31:35] 2025-10-13 21:30:54,447 | INFO     | nevents: 400
[2025-10-13 23:31:35] 2025-10-13 21:30:54,447 | INFO     | neventsw: 0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,447 | INFO     | pid: 26881
[2025-10-13 23:31:35] 2025-10-13 21:30:54,447 | INFO     | pgrp: 26881
[2025-10-13 23:31:35] 2025-10-13 21:30:54,447 | INFO     | corecount: 4
[2025-10-13 23:31:35] 2025-10-13 21:30:54,448 | INFO     | event service: False
[2025-10-13 23:31:35] 2025-10-13 21:30:54,448 | INFO     | sizes: {0: 2348868, 5: 2349130, 11: 2349186, 13039: 2379381, 13040: 2379380, 13041: 2388456, 13044: 2388640, 13051: 2388834}
[2025-10-13 23:31:35] 2025-10-13 21:30:54,448 | INFO     | --------------------------------------------------
[2025-10-13 23:31:35] 2025-10-13 21:30:54,448 | INFO     | 
[2025-10-13 23:31:35] 2025-10-13 21:30:54,448 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-10-13 23:31:35] 2025-10-13 21:30:54,467 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,467 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,467 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,467 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,468 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,468 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,468 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,468 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,468 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,469 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,469 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,469 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 23:31:35] 2025-10-13 21:30:54,469 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,469 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 23:31:35] 2025-10-13 21:30:54,470 | INFO     | job 6839989526 has completed (purged errors)
[2025-10-13 23:31:35] 2025-10-13 21:30:54,470 | INFO     | overall cleanup function is called
[2025-10-13 23:31:35] 2025-10-13 21:30:55,475 | INFO     | --- collectZombieJob: --- 10, [26881]
[2025-10-13 23:31:35] 2025-10-13 21:30:55,476 | INFO     | zombie collector waiting for pid 26881
[2025-10-13 23:31:35] 2025-10-13 21:30:55,476 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 23:31:35] 2025-10-13 21:30:55,476 | INFO     | collected zombie processes
[2025-10-13 23:31:35] 2025-10-13 21:30:55,476 | INFO     | will attempt to kill all subprocesses of pid=26881
[2025-10-13 23:31:35] 2025-10-13 21:30:55,818 | INFO     | process IDs to be killed: [26881] (in reverse order)
[2025-10-13 23:31:35] 2025-10-13 21:30:55,899 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 23:31:35] 2025-10-13 21:30:55,899 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 23:31:35] 2025-10-13 21:30:55,908 | INFO     | did not find any defunct processes belonging to 26881
[2025-10-13 23:31:35] 2025-10-13 21:30:55,917 | INFO     | did not find any defunct processes belonging to 26881
[2025-10-13 23:31:35] 2025-10-13 21:30:55,917 | INFO     | ready for new job
[2025-10-13 23:31:35] 2025-10-13 21:30:55,918 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 23:31:35] 2025-10-13 21:30:55,920 | INFO     | ***************************************
[2025-10-13 23:31:35] 2025-10-13 21:30:55,921 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 23:31:35] 2025-10-13 21:30:55,921 | INFO     | ***************************************
[2025-10-13 23:31:35] 2025-10-13 21:30:55,921 | INFO     | 
[2025-10-13 23:31:35] 2025-10-13 21:30:55,923 | INFO     | architecture information:
[2025-10-13 23:31:35] 2025-10-13 21:30:55,924 | INFO     | executing command: cat /etc/os-release
[2025-10-13 23:31:35] 2025-10-13 21:30:55,937 | INFO     | cat /etc/os-release:
[2025-10-13 23:31:35] NAME="CentOS Linux"
[2025-10-13 23:31:35] VERSION="7 (Core)"
[2025-10-13 23:31:35] ID="centos"
[2025-10-13 23:31:35] ID_LIKE="rhel fedora"
[2025-10-13 23:31:35] VERSION_ID="7"
[2025-10-13 23:31:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 23:31:35] ANSI_COLOR="0;31"
[2025-10-13 23:31:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 23:31:35] HOME_URL="https://www.centos.org/"
[2025-10-13 23:31:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 23:31:35] 
[2025-10-13 23:31:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 23:31:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 23:31:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 23:31:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 23:31:35] 
[2025-10-13 23:31:35] 2025-10-13 21:30:55,937 | INFO     | ***************************************
[2025-10-13 23:31:35] 2025-10-13 21:30:56,440 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-10-13 23:31:35] 2025-10-13 21:30:56,454 | INFO     | sufficient remaining disk space (1676416122880 B)
[2025-10-13 23:31:35] 2025-10-13 21:30:56,454 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 23:31:35] 2025-10-13 21:30:56,455 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 23:31:35] 2025-10-13 21:30:56,455 | INFO     | update_server=False
[2025-10-13 23:31:35] 2025-10-13 21:30:56,455 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 23:31:35] 2025-10-13 21:30:56,455 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:31:35] 2025-10-13 21:30:56,456 | INFO     | aborting loop
[2025-10-13 23:31:35] 2025-10-13 21:30:56,679 | INFO     | all data control threads have been joined
[2025-10-13 23:31:35] 2025-10-13 21:30:57,204 | INFO     | all job control threads have been joined
[2025-10-13 23:31:35] 2025-10-13 21:30:57,205 | INFO     | all payload control threads have been joined
[2025-10-13 23:31:35] 2025-10-13 21:30:57,422 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 23:31:35] 2025-10-13 21:30:57,461 | INFO     | [job] retrieve thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:57,461 | INFO     | [job] job monitor thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:57,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 23:31:35] 2025-10-13 21:30:57,684 | INFO     | [data] control thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:58,080 | INFO     | [payload] failed_post thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:58,208 | INFO     | [job] control thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:58,210 | INFO     | [payload] control thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:58,426 | INFO     | [job] validate thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:58,436 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:58,519 | INFO     | [payload] validate_post thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:58,646 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:58,861 | INFO     | [data] copytool_in thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:58,895 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:59,427 | INFO     | [data] copytool_out thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:30:59,456 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 23:31:35] 2025-10-13 21:31:00,461 | INFO     | [job] queue monitor thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:31:01,631 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:31:07,141 | INFO     | job.realtimelogging is not enabled
[2025-10-13 23:31:35] 2025-10-13 21:31:08,153 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 23:31:35] 2025-10-13 21:31:24,492 | INFO     | [monitor] cgroup control has ended
[2025-10-13 23:31:35] 2025-10-13 21:31:25,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23240193492800)>', '<ExcThread(monitor, started 23239958959872)>']
[2025-10-13 23:31:35] 2025-10-13 21:31:27,765 | INFO     | PID=20052 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-13 23:31:35] 2025-10-13 21:31:27,765 | INFO     | .. there are 3 such processes running
[2025-10-13 23:31:35] 2025-10-13 21:31:27,766 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 23:31:35] 2025-10-13 21:31:27,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 23:31:35] 2025-10-13 21:31:27,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 23:31:35] 2025-10-13 21:31:27,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 23:31:35] 2025-10-13 21:31:27,766 | INFO     | [monitor] control thread has ended
[2025-10-13 23:31:35] 2025-10-13 21:31:30,406 | INFO     | all workflow threads have been joined
[2025-10-13 23:31:35] 2025-10-13 21:31:30,406 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 23:31:35] 2025-10-13 21:31:30,407 | INFO     | traces error code: 0
[2025-10-13 23:31:35] 2025-10-13 21:31:30,407 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 23:31:35] 2025-10-13 21:31:30,542 [wrapper] ==== pilot stdout END ====
[2025-10-13 23:31:35] 2025-10-13 21:31:30,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 23:31:35] 2025-10-13 21:31:30,547 [wrapper] pilotpid: 20052
[2025-10-13 23:31:35] 2025-10-13 21:31:30,549 [wrapper] Pilot exit status: 0
[2025-10-13 23:31:35] 2025-10-13 21:31:30,558 [wrapper] pandaids: 6839989526
[2025-10-13 23:31:35] 2025-10-13 21:31:30,613 [wrapper] cleanup supervisor_pilot  182558 20053
[2025-10-13 23:31:35] 2025-10-13 21:31:30,615 [wrapper] Test setup, not cleaning
[2025-10-13 23:31:35] 2025-10-13 21:31:30,618 [wrapper] apfmon messages muted
[2025-10-13 23:31:35] 2025-10-13 21:31:30,620 [wrapper] ==== wrapper stdout END ====
[2025-10-13 23:31:35] 2025-10-13 21:31:30,623 [wrapper] ==== wrapper stderr END ====
[2025-10-13 23:31:35]  *** Error codes and diagnostics ***
[2025-10-13 23:31:35]     "exeErrorCode": 0,
[2025-10-13 23:31:35]     "exeErrorDiag": "",
[2025-10-13 23:31:35]     "pilotErrorCode": 0,
[2025-10-13 23:31:35]     "pilotErrorDiag": "",
[2025-10-13 23:31:35]  *** Listing of results directory ***
[2025-10-13 23:31:35] total 416640
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:35 pilot3.tar.gz
[2025-10-13 23:31:35] -rwx------ 1 boinc boinc     36292 Oct 12 14:57 runpilot2-wrapper.sh
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:57 queuedata.json
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc       100 Oct 13 19:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 23:31:35] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 19:52 run_atlas
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc       105 Oct 13 19:52 job.xml
[2025-10-13 23:31:35] -rw-r--r-- 2 boinc boinc 220462174 Oct 13 19:52 EVNT.46676267._003835.pool.root.1
[2025-10-13 23:31:35] drwxrwx--x 2 boinc boinc      4096 Oct 13 19:52 shared
[2025-10-13 23:31:35] -rw-r--r-- 2 boinc boinc    569682 Oct 13 19:52 input.tar.gz
[2025-10-13 23:31:35] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:52 start_atlas.sh
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc         0 Oct 13 19:52 boinc_lockfile
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc      2550 Oct 13 19:52 pandaJob.out
[2025-10-13 23:31:35] -rw------- 1 boinc boinc    972791 Oct 13 19:53 agis_schedconf.cvmfs.json
[2025-10-13 23:31:35] drwx------ 5 boinc boinc      4096 Oct 13 19:53 pilot3
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc      6426 Oct 13 20:53 init_data.xml
[2025-10-13 23:31:35] -rw------- 1 boinc boinc 197762378 Oct 13 23:30 HITS.46676269._078899.pool.root.1
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc       529 Oct 13 23:30 boinc_task_state.xml
[2025-10-13 23:31:35] -rw------- 1 boinc boinc      1034 Oct 13 23:30 memory_monitor_summary.json
[2025-10-13 23:31:35] -rw------- 1 boinc boinc   1560580 Oct 13 23:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 23:31:35] -rw------- 1 boinc boinc    397615 Oct 13 23:30 log.46676269._078899.job.log.tgz.1
[2025-10-13 23:31:35] -rw------- 1 boinc boinc        95 Oct 13 23:30 pilot_heartbeat.json
[2025-10-13 23:31:35] -rw------- 1 boinc boinc      7831 Oct 13 23:30 heartbeat.json
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc        27 Oct 13 23:31 wrapper_checkpoint.txt
[2025-10-13 23:31:35] -rw------- 1 boinc boinc      4904 Oct 13 23:31 pilotlog.txt
[2025-10-13 23:31:35] -rw------- 1 boinc boinc   1860418 Oct 13 23:31 log.46676269._078899.job.log.1
[2025-10-13 23:31:35] -rw------- 1 boinc boinc       357 Oct 13 23:31 output.list
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc       620 Oct 13 23:31 runtime_log
[2025-10-13 23:31:35] -rw------- 1 boinc boinc   2273280 Oct 13 23:31 result.tar.gz
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc      9070 Oct 13 23:31 runtime_log.err
[2025-10-13 23:31:35] -rw------- 1 boinc boinc       664 Oct 13 23:31 n4xLDm4oAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8ujNDmkd6G7n.diag
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc      8192 Oct 13 23:31 boinc_mmap_file
[2025-10-13 23:31:35] -rw-r--r-- 1 boinc boinc     20645 Oct 13 23:31 stderr.txt
[2025-10-13 23:31:36] HITS file was successfully produced:
[2025-10-13 23:31:36] -rw------- 1 boinc boinc 197762378 Oct 13 23:30 shared/HITS.pool.root.1
[2025-10-13 23:31:36]  *** Contents of shared directory: ***
[2025-10-13 23:31:36] total 411228
[2025-10-13 23:31:36] -rw-r--r-- 2 boinc boinc 220462174 Oct 13 19:52 ATLAS.root_0
[2025-10-13 23:31:36] -rw-r--r-- 2 boinc boinc    569682 Oct 13 19:52 input.tar.gz
[2025-10-13 23:31:36] -rw-r--r-- 2 boinc boinc     15120 Oct 13 19:52 start_atlas.sh
[2025-10-13 23:31:36] -rw------- 1 boinc boinc 197762378 Oct 13 23:30 HITS.pool.root.1
[2025-10-13 23:31:36] -rw------- 1 boinc boinc   2273280 Oct 13 23:31 result.tar.gz
23:31:37 (16083): run_atlas exited; CPU time 51014.807812
23:31:37 (16083): called boinc_finish(0)

</stderr_txt>
]]>

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