Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:18:29 (16246): wrapper (7.7.26015): starting
10:18:29 (16246): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:18:29] Arguments: --nthreads 8
[2025-10-12 10:18:29] Threads: 8
[2025-10-12 10:18:29] Checking for CVMFS
[2025-10-12 10:18:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:18:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:18:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:18:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:18:29] 2.11.2.0 6956 52967 130704 151623 2 56 10272994 18432000 1833 130560 0 47952407 99.973 2390208 39891 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:18:29] CVMFS is ok
[2025-10-12 10:18:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:18:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:18:29] Further information can be found at the LHC@home message board.
[2025-10-12 10:18:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:18:29] Checking for apptainer binary...
[2025-10-12 10:18:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:18:29] Running /usr/bin/apptainer --version
[2025-10-12 10:18:29] apptainer version 1.3.2-1.el7
[2025-10-12 10:18:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:18:30] c-206-16.aglt2.org
[2025-10-12 10:18:30] apptainer works
[2025-10-12 10:18:30] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:18:30] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:18:30] Starting ATLAS job with PandaID=6839386290
[2025-10-12 10:18:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:22:04]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:22:04] 2025-10-12 17:21:31,893 | INFO     | sufficient remaining disk space (28204597248 B)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,893 | INFO     | intersect: 4998701067.518949
[2025-10-12 13:22:04] 2025-10-12 17:21:31,893 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,893 | INFO     | chi2: 2.1420083050427543
[2025-10-12 13:22:04] 2025-10-12 17:21:31,894 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 13:22:04] 2025-10-12 17:21:31,895 | INFO     | sum of deviations: 6924521444.999999
[2025-10-12 13:22:04] 2025-10-12 17:21:31,895 | INFO     | mean x: 1760284052.0
[2025-10-12 13:22:04] 2025-10-12 17:21:31,895 | INFO     | mean y: 2499317.1142857145
[2025-10-12 13:22:04] 2025-10-12 17:21:31,895 | INFO     | -- intersect: -7332399549.310018
[2025-10-12 13:22:04] 2025-10-12 17:21:31,895 | INFO     | intersect: -7332399549.310018
[2025-10-12 13:22:04] 2025-10-12 17:21:31,895 | INFO     | chi2: 1.3682691506418454
[2025-10-12 13:22:04] 2025-10-12 17:21:31,896 | INFO     | current chi2=1.3682691506418454 (change=36.122136061721065 %)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,896 | INFO     | sum of square deviations: 1523386702.5
[2025-10-12 13:22:04] 2025-10-12 17:21:31,897 | INFO     | sum of deviations: 6921047647.5
[2025-10-12 13:22:04] 2025-10-12 17:21:31,897 | INFO     | mean x: 1760283899.5
[2025-10-12 13:22:04] 2025-10-12 17:21:31,897 | INFO     | mean y: 2499313.2647058824
[2025-10-12 13:22:04] 2025-10-12 17:21:31,897 | INFO     | -- intersect: -7994819241.225304
[2025-10-12 13:22:04] 2025-10-12 17:21:31,897 | INFO     | intersect: -7994819241.225304
[2025-10-12 13:22:04] 2025-10-12 17:21:31,897 | INFO     | chi2: 1.3692141306998014
[2025-10-12 13:22:04] 2025-10-12 17:21:31,898 | INFO     | current chi2=1.3692141306998014 (change=-0.06906390146358807 %)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,898 | INFO     | right removable region: 169
[2025-10-12 13:22:04] 2025-10-12 17:21:31,898 | INFO     | sum of square deviations: 1661798600.0
[2025-10-12 13:22:04] 2025-10-12 17:21:31,899 | INFO     | sum of deviations: -30080989902.0
[2025-10-12 13:22:04] 2025-10-12 17:21:31,899 | INFO     | mean x: 1760284357.0
[2025-10-12 13:22:04] 2025-10-12 17:21:31,899 | INFO     | mean y: 2512656.6057142857
[2025-10-12 13:22:04] 2025-10-12 17:21:31,899 | INFO     | -- intersect: 31866239083.84278
[2025-10-12 13:22:04] 2025-10-12 17:21:31,899 | INFO     | intersect: 31866239083.84278
[2025-10-12 13:22:04] 2025-10-12 17:21:31,900 | INFO     | chi2: 0.8281100751859555
[2025-10-12 13:22:04] 2025-10-12 17:21:31,900 | INFO     | current chi2=0.8281100751859555 (change=61.33954881330741 %)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,900 | INFO     | sum of square deviations: 1523386702.5
[2025-10-12 13:22:04] 2025-10-12 17:21:31,901 | INFO     | sum of deviations: -27757044689.5
[2025-10-12 13:22:04] 2025-10-12 17:21:31,901 | INFO     | mean x: 1760284509.5
[2025-10-12 13:22:04] 2025-10-12 17:21:31,901 | INFO     | mean y: 2510078.1117647057
[2025-10-12 13:22:04] 2025-10-12 17:21:31,901 | INFO     | -- intersect: 32075978827.86677
[2025-10-12 13:22:04] 2025-10-12 17:21:31,901 | INFO     | intersect: 32075978827.86677
[2025-10-12 13:22:04] 2025-10-12 17:21:31,902 | INFO     | chi2: 0.8201110976607136
[2025-10-12 13:22:04] 2025-10-12 17:21:31,902 | INFO     | current chi2=0.8201110976607136 (change=0.9659316756224371 %)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,902 | INFO     | left removable region: 20
[2025-10-12 13:22:04] 2025-10-12 17:21:31,902 | INFO     | sum of square deviations: 1025693650.0
[2025-10-12 13:22:04] 2025-10-12 17:21:31,903 | INFO     | sum of deviations: -11029651438.000002
[2025-10-12 13:22:04] 2025-10-12 17:21:31,903 | INFO     | mean x: 1760284479.0
[2025-10-12 13:22:04] 2025-10-12 17:21:31,903 | INFO     | mean y: 2519162.1275167787
[2025-10-12 13:22:04] 2025-10-12 17:21:31,903 | INFO     | -- intersect: 18931489069.556927
[2025-10-12 13:22:04] 2025-10-12 17:21:31,903 | INFO     | intersect: 18931489069.556927
[2025-10-12 13:22:04] 2025-10-12 17:21:31,904 | INFO     | chi2: 0.019864357666316355
[2025-10-12 13:22:04] 2025-10-12 17:21:31,904 | INFO     | -- intersect: 18931489069.556927
[2025-10-12 13:22:04] 2025-10-12 17:21:31,904 | INFO     | current memory leak: -10.75 B/s (using 149 data points, chi2=0.02)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,904 | INFO     | could have reported an average CPU frequency of 2551 MHz (9 samples)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,905 | INFO     | ..............................
[2025-10-12 13:22:04] 2025-10-12 17:21:31,905 | INFO     | . Timing measurements:
[2025-10-12 13:22:04] 2025-10-12 17:21:31,905 | INFO     | . get job = 0 s
[2025-10-12 13:22:04] 2025-10-12 17:21:31,905 | INFO     | . initial setup = 2 s
[2025-10-12 13:22:04] 2025-10-12 17:21:31,905 | INFO     | . payload setup = 4 s
[2025-10-12 13:22:04] 2025-10-12 17:21:31,905 | INFO     | . stage-in = 0 s
[2025-10-12 13:22:04] 2025-10-12 17:21:31,905 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-6839386290: 3761177 B (within 2537553920 B limit)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,905 | INFO     | . payload execution = 10940 s
[2025-10-12 13:22:04] 2025-10-12 17:21:31,906 | INFO     | . stage-out = 2 s
[2025-10-12 13:22:04] 2025-10-12 17:21:31,906 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-6839386290/HITS.46676269._070642.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,906 | INFO     | . log creation = 0 s
[2025-10-12 13:22:04] 2025-10-12 17:21:31,906 | INFO     | total size of present files: 0 B (workdir size: 3761177 B)
[2025-10-12 13:22:04] 2025-10-12 17:21:31,906 | INFO     | ..............................
[2025-10-12 13:22:04] 2025-10-12 17:21:31,906 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-6839386290/HITS.46676269._070642.pool.root.1 since it does not exist
[2025-10-12 13:22:04] 2025-10-12 17:21:32,141 | INFO     | number of running child processes to parent process 26400: 1
[2025-10-12 13:22:04] 2025-10-12 17:21:32,141 | INFO     | maximum number of monitored processes: 6
[2025-10-12 13:22:04] 2025-10-12 17:21:32,142 | INFO     | aborting job monitoring since job object (job id=6839386290) has expired
[2025-10-12 13:22:04] 2025-10-12 17:21:32,354 | INFO     | 
[2025-10-12 13:22:04] 2025-10-12 17:21:32,354 | INFO     | job summary report
[2025-10-12 13:22:04] 2025-10-12 17:21:32,354 | INFO     | --------------------------------------------------
[2025-10-12 13:22:04] 2025-10-12 17:21:32,354 | INFO     | PanDA job id: 6839386290
[2025-10-12 13:22:04] 2025-10-12 17:21:32,354 | INFO     | task id: 46676269
[2025-10-12 13:22:04] 2025-10-12 17:21:32,355 | INFO     | errors: (none)
[2025-10-12 13:22:04] 2025-10-12 17:21:32,355 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:22:04] 2025-10-12 17:21:32,355 | INFO     | pilot state: finished 
[2025-10-12 13:22:04] 2025-10-12 17:21:32,355 | INFO     | transexitcode: 0
[2025-10-12 13:22:04] 2025-10-12 17:21:32,355 | INFO     | exeerrorcode: 0
[2025-10-12 13:22:04] 2025-10-12 17:21:32,355 | INFO     | exeerrordiag: 
[2025-10-12 13:22:04] 2025-10-12 17:21:32,356 | INFO     | exitcode: 0
[2025-10-12 13:22:04] 2025-10-12 17:21:32,356 | INFO     | exitmsg: OK
[2025-10-12 13:22:04] 2025-10-12 17:21:32,356 | INFO     | cpuconsumptiontime: 82823 s
[2025-10-12 13:22:04] 2025-10-12 17:21:32,356 | INFO     | nevents: 400
[2025-10-12 13:22:04] 2025-10-12 17:21:32,356 | INFO     | neventsw: 0
[2025-10-12 13:22:04] 2025-10-12 17:21:32,356 | INFO     | pid: 26400
[2025-10-12 13:22:04] 2025-10-12 17:21:32,357 | INFO     | pgrp: 26400
[2025-10-12 13:22:04] 2025-10-12 17:21:32,357 | INFO     | corecount: 8
[2025-10-12 13:22:04] 2025-10-12 17:21:32,357 | INFO     | event service: False
[2025-10-12 13:22:04] 2025-10-12 17:21:32,357 | INFO     | sizes: {0: 2348029, 1: 2348885, 4: 2349147, 12: 2349175, 10948: 2378305, 10952: 2387487, 10956: 2387717}
[2025-10-12 13:22:04] 2025-10-12 17:21:32,357 | INFO     | --------------------------------------------------
[2025-10-12 13:22:04] 2025-10-12 17:21:32,357 | INFO     | 
[2025-10-12 13:22:04] 2025-10-12 17:21:32,358 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-12 13:22:04] 2025-10-12 17:21:32,381 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,381 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,382 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,382 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,382 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,382 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,382 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,382 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,383 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,383 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,383 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,383 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,383 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,384 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,384 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,385 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:22:04] 2025-10-12 17:21:32,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:22:04] 2025-10-12 17:21:32,385 | INFO     | job 6839386290 has completed (purged errors)
[2025-10-12 13:22:04] 2025-10-12 17:21:32,385 | INFO     | overall cleanup function is called
[2025-10-12 13:22:04] 2025-10-12 17:21:33,393 | INFO     | --- collectZombieJob: --- 10, [26400]
[2025-10-12 13:22:04] 2025-10-12 17:21:33,393 | INFO     | zombie collector waiting for pid 26400
[2025-10-12 13:22:04] 2025-10-12 17:21:33,393 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:22:04] 2025-10-12 17:21:33,393 | INFO     | collected zombie processes
[2025-10-12 13:22:04] 2025-10-12 17:21:33,393 | INFO     | will attempt to kill all subprocesses of pid=26400
[2025-10-12 13:22:04] 2025-10-12 17:21:33,540 | INFO     | process IDs to be killed: [26400] (in reverse order)
[2025-10-12 13:22:04] 2025-10-12 17:21:33,585 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:22:04] 2025-10-12 17:21:33,585 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:22:04] 2025-10-12 17:21:33,588 | INFO     | did not find any defunct processes belonging to 26400
[2025-10-12 13:22:04] 2025-10-12 17:21:33,590 | INFO     | did not find any defunct processes belonging to 26400
[2025-10-12 13:22:04] 2025-10-12 17:21:33,590 | INFO     | ready for new job
[2025-10-12 13:22:04] 2025-10-12 17:21:33,591 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:22:04] 2025-10-12 17:21:33,592 | INFO     | ***************************************
[2025-10-12 13:22:04] 2025-10-12 17:21:33,592 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:22:04] 2025-10-12 17:21:33,592 | INFO     | ***************************************
[2025-10-12 13:22:04] 2025-10-12 17:21:33,592 | INFO     | 
[2025-10-12 13:22:04] 2025-10-12 17:21:33,593 | INFO     | architecture information:
[2025-10-12 13:22:04] 2025-10-12 17:21:33,593 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:22:04] 2025-10-12 17:21:33,606 | INFO     | cat /etc/os-release:
[2025-10-12 13:22:04] NAME="CentOS Linux"
[2025-10-12 13:22:04] VERSION="7 (Core)"
[2025-10-12 13:22:04] ID="centos"
[2025-10-12 13:22:04] ID_LIKE="rhel fedora"
[2025-10-12 13:22:04] VERSION_ID="7"
[2025-10-12 13:22:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:22:04] ANSI_COLOR="0;31"
[2025-10-12 13:22:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:22:04] HOME_URL="https://www.centos.org/"
[2025-10-12 13:22:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:22:04] 
[2025-10-12 13:22:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:22:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:22:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:22:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:22:04] 
[2025-10-12 13:22:04] 2025-10-12 17:21:33,606 | INFO     | ***************************************
[2025-10-12 13:22:04] 2025-10-12 17:21:34,107 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-12 13:22:04] 2025-10-12 17:21:34,124 | INFO     | sufficient remaining disk space (28209840128 B)
[2025-10-12 13:22:04] 2025-10-12 17:21:34,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:22:04] 2025-10-12 17:21:34,125 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:22:04] 2025-10-12 17:21:34,125 | INFO     | update_server=False
[2025-10-12 13:22:04] 2025-10-12 17:21:34,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:22:04] 2025-10-12 17:21:34,126 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:22:04] 2025-10-12 17:21:34,126 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:22:04] 2025-10-12 17:21:34,126 | INFO     | aborting loop
[2025-10-12 13:22:04] 2025-10-12 17:21:34,319 | INFO     | all job control threads have been joined
[2025-10-12 13:22:04] 2025-10-12 17:21:34,348 | INFO     | all payload control threads have been joined
[2025-10-12 13:22:04] 2025-10-12 17:21:34,951 | INFO     | all data control threads have been joined
[2025-10-12 13:22:04] 2025-10-12 17:21:35,131 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:35,131 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:35,132 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:35,324 | INFO     | [job] control thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:35,353 | INFO     | [payload] control thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:35,500 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:22:04] 2025-10-12 17:21:35,755 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:35,812 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:35,851 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:35,956 | INFO     | [data] control thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:36,606 | INFO     | [job] validate thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:36,625 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:36,625 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:36,680 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:37,017 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:22:04] 2025-10-12 17:21:37,505 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:38,022 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:38,131 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:22:04] 2025-10-12 17:21:58,500 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:22:04] 2025-10-12 17:21:58,813 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140040530630464)>', '<ExcThread(monitor, started 140039958820608)>']
[2025-10-12 13:22:04] 2025-10-12 17:22:03,742 | INFO     | PID=19969 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:22:04] 2025-10-12 17:22:03,742 | INFO     | .. there are 3 such processes running
[2025-10-12 13:22:04] 2025-10-12 17:22:03,743 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:22:04] 2025-10-12 17:22:03,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:22:04] 2025-10-12 17:22:03,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:22:04] 2025-10-12 17:22:03,744 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:22:04] 2025-10-12 17:22:03,744 | INFO     | [monitor] control thread has ended
[2025-10-12 13:22:04] 2025-10-12 17:22:03,841 | INFO     | all workflow threads have been joined
[2025-10-12 13:22:04] 2025-10-12 17:22:03,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:22:04] 2025-10-12 17:22:03,841 | INFO     | traces error code: 0
[2025-10-12 13:22:04] 2025-10-12 17:22:03,842 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:22:04] 2025-10-12 17:22:03,967 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:22:04] 2025-10-12 17:22:03,970 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:22:04] 2025-10-12 17:22:03,972 [wrapper] pilotpid: 19969
[2025-10-12 13:22:04] 2025-10-12 17:22:03,974 [wrapper] Pilot exit status: 0
[2025-10-12 13:22:04] 2025-10-12 17:22:03,985 [wrapper] pandaids: 6839386290
[2025-10-12 13:22:04] 2025-10-12 17:22:04,013 [wrapper] cleanup supervisor_pilot 19912 19970
[2025-10-12 13:22:04] 2025-10-12 17:22:04,015 [wrapper] Test setup, not cleaning
[2025-10-12 13:22:04] 2025-10-12 17:22:04,017 [wrapper] apfmon messages muted
[2025-10-12 13:22:04] 2025-10-12 17:22:04,019 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:22:04] 2025-10-12 17:22:04,021 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:22:04]  *** Error codes and diagnostics ***
[2025-10-12 13:22:04]     "exeErrorCode": 0,
[2025-10-12 13:22:04]     "exeErrorDiag": "",
[2025-10-12 13:22:04]     "pilotErrorCode": 0,
[2025-10-12 13:22:04]     "pilotErrorDiag": "",
[2025-10-12 13:22:04]  *** Listing of results directory ***
[2025-10-12 13:22:04] total 416664
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 00:04 pilot3.tar.gz
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 00:08 queuedata.json
[2025-10-12 13:22:04] -rwx------ 1 boincer umatlas     36292 Oct 12 00:09 runpilot2-wrapper.sh
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:22:04] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:18 run_atlas
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:18 job.xml
[2025-10-12 13:22:04] -rw-r--r-- 2 boincer umatlas 222870580 Oct 12 10:18 EVNT.46676267._003246.pool.root.1
[2025-10-12 13:22:04] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:18 start_atlas.sh
[2025-10-12 13:22:04] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:18 shared
[2025-10-12 13:22:04] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 10:18 input.tar.gz
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:18 boinc_lockfile
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 10:18 pandaJob.out
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas    975528 Oct 12 10:18 agis_schedconf.cvmfs.json
[2025-10-12 13:22:04] drwx------ 5 boincer umatlas      4096 Oct 12 10:18 pilot3
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas      5950 Oct 12 13:13 init_data.xml
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas 195975422 Oct 12 13:20 HITS.46676269._070642.pool.root.1
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas       530 Oct 12 13:21 boinc_task_state.xml
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas      1054 Oct 12 13:21 memory_monitor_summary.json
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas   1560580 Oct 12 13:21 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas    419625 Oct 12 13:21 log.46676269._070642.job.log.tgz.1
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas      7861 Oct 12 13:21 heartbeat.json
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:21 boinc_mmap_file
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas        28 Oct 12 13:21 wrapper_checkpoint.txt
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas        95 Oct 12 13:22 pilot_heartbeat.json
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas      4821 Oct 12 13:22 pilotlog.txt
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas   1537074 Oct 12 13:22 log.46676269._070642.job.log.1
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas       357 Oct 12 13:22 output.list
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:22 runtime_log
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas   1976320 Oct 12 13:22 result.tar.gz
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas       662 Oct 12 13:22 weFODmWZ2R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzYiNDmfdpjzm.diag
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas      8704 Oct 12 13:22 runtime_log.err
[2025-10-12 13:22:04] -rw-r--r-- 1 boincer umatlas     21320 Oct 12 13:22 stderr.txt
[2025-10-12 13:22:04] HITS file was successfully produced:
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas 195975422 Oct 12 13:20 shared/HITS.pool.root.1
[2025-10-12 13:22:04]  *** Contents of shared directory: ***
[2025-10-12 13:22:04] total 411544
[2025-10-12 13:22:04] -rw-r--r-- 2 boincer umatlas 222870580 Oct 12 10:18 ATLAS.root_0
[2025-10-12 13:22:04] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:18 start_atlas.sh
[2025-10-12 13:22:04] -rw-r--r-- 2 boincer umatlas    569680 Oct 12 10:18 input.tar.gz
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas 195975422 Oct 12 13:20 HITS.pool.root.1
[2025-10-12 13:22:04] -rw------- 1 boincer umatlas   1976320 Oct 12 13:22 result.tar.gz
13:22:05 (16246): run_atlas exited; CPU time 82968.344012
13:22:05 (16246): called boinc_finish(0)

</stderr_txt>
]]>

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