Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:17:32 (35571): wrapper (7.7.26015): starting
10:17:32 (35571): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:17:32] Arguments: --nthreads 8
[2025-10-12 10:17:32] Threads: 8
[2025-10-12 10:17:32] Checking for CVMFS
[2025-10-12 10:17:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:17:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:17:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:17:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:17:33] 2.11.2.0 5808 105681 98740 151623 0 57 13738392 18432000 2749 130560 0 65788930 99.978 4070562 4201 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-10-12 10:17:33] CVMFS is ok
[2025-10-12 10:17:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:17:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:17:33] Further information can be found at the LHC@home message board.
[2025-10-12 10:17:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:17:33] Checking for apptainer binary...
[2025-10-12 10:17:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:17:33] Running /usr/bin/apptainer --version
[2025-10-12 10:17:33] apptainer version 1.3.2-1.el7
[2025-10-12 10:17:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:17:34] c-9-34.aglt2.org
[2025-10-12 10:17:34] apptainer works
[2025-10-12 10:17:34] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:17:34] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:17:34] Starting ATLAS job with PandaID=6839866160
[2025-10-12 10:17:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 13:03:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 13:03:07] 2025-10-12 17:02:20,574 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 13:03:07] 2025-10-12 17:02:20,575 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 13:03:07] 2025-10-12 17:02:20,577 | INFO     | fitting pss+swap vs Time
[2025-10-12 13:03:07] 2025-10-12 17:02:20,577 | INFO     | sum of square deviations: 1318277740.5
[2025-10-12 13:03:07] 2025-10-12 17:02:20,578 | INFO     | sum of deviations: -21555557434.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,578 | INFO     | mean x: 1760283601.5
[2025-10-12 13:03:07] 2025-10-12 17:02:20,578 | INFO     | mean y: 2509769.901234568
[2025-10-12 13:03:07] 2025-10-12 17:02:20,578 | INFO     | -- intersect: 28785438515.910522
[2025-10-12 13:03:07] 2025-10-12 17:02:20,578 | INFO     | intersect: 28785438515.910522
[2025-10-12 13:03:07] 2025-10-12 17:02:20,578 | INFO     | chi2: 2.2351330108645415
[2025-10-12 13:03:07] 2025-10-12 17:02:20,579 | INFO     | sum of square deviations: 1199940638.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,579 | INFO     | sum of deviations: -9664028578.000002
[2025-10-12 13:03:07] 2025-10-12 17:02:20,579 | INFO     | mean x: 1760283449.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,579 | INFO     | mean y: 2524742.152866242
[2025-10-12 13:03:07] 2025-10-12 17:02:20,580 | INFO     | -- intersect: 14179417346.498856
[2025-10-12 13:03:07] 2025-10-12 17:02:20,580 | INFO     | intersect: 14179417346.498856
[2025-10-12 13:03:07] 2025-10-12 17:02:20,580 | INFO     | chi2: 1.41901049817757
[2025-10-12 13:03:07] 2025-10-12 17:02:20,580 | INFO     | current chi2=1.41901049817757 (change=36.51337565683835 %)
[2025-10-12 13:03:07] 2025-10-12 17:02:20,580 | INFO     | sum of square deviations: 1088905998.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,581 | INFO     | sum of deviations: -8921506535.500004
[2025-10-12 13:03:07] 2025-10-12 17:02:20,581 | INFO     | mean x: 1760283296.5
[2025-10-12 13:03:07] 2025-10-12 17:02:20,581 | INFO     | mean y: 2525762.3092105263
[2025-10-12 13:03:07] 2025-10-12 17:02:20,581 | INFO     | -- intersect: 14424687971.811743
[2025-10-12 13:03:07] 2025-10-12 17:02:20,581 | INFO     | intersect: 14424687971.811743
[2025-10-12 13:03:07] 2025-10-12 17:02:20,581 | INFO     | chi2: 1.4185155463782249
[2025-10-12 13:03:07] 2025-10-12 17:02:20,581 | INFO     | current chi2=1.4185155463782249 (change=0.03488006607285683 %)
[2025-10-12 13:03:07] 2025-10-12 17:02:20,582 | INFO     | right removable region: 151
[2025-10-12 13:03:07] 2025-10-12 17:02:20,582 | INFO     | sum of square deviations: 1199940638.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,582 | INFO     | sum of deviations: -43363432828.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,582 | INFO     | mean x: 1760283754.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,583 | INFO     | mean y: 2537435.3630573247
[2025-10-12 13:03:07] 2025-10-12 17:02:20,583 | INFO     | -- intersect: 63615639540.16791
[2025-10-12 13:03:07] 2025-10-12 17:02:20,583 | INFO     | intersect: 63615639540.16791
[2025-10-12 13:03:07] 2025-10-12 17:02:20,583 | INFO     | chi2: 0.9246676133504991
[2025-10-12 13:03:07] 2025-10-12 17:02:20,583 | INFO     | current chi2=0.9246676133504991 (change=58.630309299004935 %)
[2025-10-12 13:03:07] 2025-10-12 17:02:20,583 | INFO     | sum of square deviations: 1088905998.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,584 | INFO     | sum of deviations: -39219000504.5
[2025-10-12 13:03:07] 2025-10-12 17:02:20,584 | INFO     | mean x: 1760283906.5
[2025-10-12 13:03:07] 2025-10-12 17:02:20,584 | INFO     | mean y: 2531731.6513157897
[2025-10-12 13:03:07] 2025-10-12 17:02:20,584 | INFO     | -- intersect: 63402472170.85048
[2025-10-12 13:03:07] 2025-10-12 17:02:20,584 | INFO     | intersect: 63402472170.85048
[2025-10-12 13:03:07] 2025-10-12 17:02:20,585 | INFO     | chi2: 0.9241095541056086
[2025-10-12 13:03:07] 2025-10-12 17:02:20,585 | INFO     | current chi2=0.9241095541056086 (change=0.06035241602854342 %)
[2025-10-12 13:03:07] 2025-10-12 17:02:20,585 | INFO     | left removable region: 20
[2025-10-12 13:03:07] 2025-10-12 17:02:20,585 | INFO     | sum of square deviations: 697054930.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,585 | INFO     | sum of deviations: -17562307358.000004
[2025-10-12 13:03:07] 2025-10-12 17:02:20,586 | INFO     | mean x: 1760283876.0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,586 | INFO     | mean y: 2535697.0610687025
[2025-10-12 13:03:07] 2025-10-12 17:02:20,586 | INFO     | -- intersect: 44352909157.07456
[2025-10-12 13:03:07] 2025-10-12 17:02:20,586 | INFO     | intersect: 44352909157.07456
[2025-10-12 13:03:07] 2025-10-12 17:02:20,586 | INFO     | chi2: 0.05957371123702533
[2025-10-12 13:03:07] 2025-10-12 17:02:20,586 | INFO     | -- intersect: 44352909157.07456
[2025-10-12 13:03:07] 2025-10-12 17:02:20,586 | INFO     | current memory leak: -25.20 B/s (using 131 data points, chi2=0.06)
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | could have reported an average CPU frequency of 2999 MHz (9 samples)
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | ..............................
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | . Timing measurements:
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | . get job = 0 s
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | . initial setup = 2 s
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | . payload setup = 4 s
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | . stage-in = 0 s
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | . payload execution = 9845 s
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | . stage-out = 0 s
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | . log creation = 0 s
[2025-10-12 13:03:07] 2025-10-12 17:02:20,587 | INFO     | ..............................
[2025-10-12 13:03:07] 2025-10-12 17:02:20,670 | INFO     | 
[2025-10-12 13:03:07] 2025-10-12 17:02:20,671 | INFO     | job summary report
[2025-10-12 13:03:07] 2025-10-12 17:02:20,671 | INFO     | --------------------------------------------------
[2025-10-12 13:03:07] 2025-10-12 17:02:20,671 | INFO     | PanDA job id: 6839866160
[2025-10-12 13:03:07] 2025-10-12 17:02:20,671 | INFO     | task id: 46676269
[2025-10-12 13:03:07] 2025-10-12 17:02:20,671 | INFO     | errors: (none)
[2025-10-12 13:03:07] 2025-10-12 17:02:20,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 13:03:07] 2025-10-12 17:02:20,672 | INFO     | pilot state: finished 
[2025-10-12 13:03:07] 2025-10-12 17:02:20,672 | INFO     | transexitcode: 0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,672 | INFO     | exeerrorcode: 0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,672 | INFO     | exeerrordiag: 
[2025-10-12 13:03:07] 2025-10-12 17:02:20,672 | INFO     | exitcode: 0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,672 | INFO     | exitmsg: OK
[2025-10-12 13:03:07] 2025-10-12 17:02:20,673 | INFO     | cpuconsumptiontime: 74094 s
[2025-10-12 13:03:07] 2025-10-12 17:02:20,673 | INFO     | nevents: 400
[2025-10-12 13:03:07] 2025-10-12 17:02:20,673 | INFO     | neventsw: 0
[2025-10-12 13:03:07] 2025-10-12 17:02:20,673 | INFO     | pid: 47823
[2025-10-12 13:03:07] 2025-10-12 17:02:20,673 | INFO     | pgrp: 47823
[2025-10-12 13:03:07] 2025-10-12 17:02:20,673 | INFO     | corecount: 8
[2025-10-12 13:03:07] 2025-10-12 17:02:20,673 | INFO     | event service: False
[2025-10-12 13:03:07] 2025-10-12 17:02:20,674 | INFO     | sizes: {0: 2348629, 1: 2348884, 5: 2349146, 12: 2349202, 9854: 2377744, 9856: 2386742, 9857: 2386926, 9861: 2387184}
[2025-10-12 13:03:07] 2025-10-12 17:02:20,674 | INFO     | --------------------------------------------------
[2025-10-12 13:03:07] 2025-10-12 17:02:20,674 | INFO     | 
[2025-10-12 13:03:07] 2025-10-12 17:02:20,674 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 13:03:07] 2025-10-12 17:02:20,691 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,691 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,692 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,692 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,692 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,692 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,692 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,692 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,693 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,693 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,693 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,693 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,693 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,693 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,694 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,694 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,694 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,694 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 13:03:07] 2025-10-12 17:02:20,694 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,694 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 13:03:07] 2025-10-12 17:02:20,695 | INFO     | job 6839866160 has completed (purged errors)
[2025-10-12 13:03:07] 2025-10-12 17:02:20,695 | INFO     | overall cleanup function is called
[2025-10-12 13:03:07] 2025-10-12 17:02:21,702 | INFO     | --- collectZombieJob: --- 10, [47823]
[2025-10-12 13:03:07] 2025-10-12 17:02:21,702 | INFO     | zombie collector waiting for pid 47823
[2025-10-12 13:03:07] 2025-10-12 17:02:21,702 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 13:03:07] 2025-10-12 17:02:21,702 | INFO     | collected zombie processes
[2025-10-12 13:03:07] 2025-10-12 17:02:21,703 | INFO     | will attempt to kill all subprocesses of pid=47823
[2025-10-12 13:03:07] 2025-10-12 17:02:21,989 | INFO     | process IDs to be killed: [47823] (in reverse order)
[2025-10-12 13:03:07] 2025-10-12 17:02:22,059 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 13:03:07] 2025-10-12 17:02:22,059 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 13:03:07] 2025-10-12 17:02:22,065 | INFO     | did not find any defunct processes belonging to 47823
[2025-10-12 13:03:07] 2025-10-12 17:02:22,069 | INFO     | did not find any defunct processes belonging to 47823
[2025-10-12 13:03:07] 2025-10-12 17:02:22,070 | INFO     | ready for new job
[2025-10-12 13:03:07] 2025-10-12 17:02:22,070 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 13:03:07] 2025-10-12 17:02:22,071 | INFO     | ***************************************
[2025-10-12 13:03:07] 2025-10-12 17:02:22,071 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 13:03:07] 2025-10-12 17:02:22,071 | INFO     | ***************************************
[2025-10-12 13:03:07] 2025-10-12 17:02:22,071 | INFO     | 
[2025-10-12 13:03:07] 2025-10-12 17:02:22,072 | INFO     | architecture information:
[2025-10-12 13:03:07] 2025-10-12 17:02:22,073 | INFO     | executing command: cat /etc/os-release
[2025-10-12 13:03:07] 2025-10-12 17:02:22,087 | INFO     | cat /etc/os-release:
[2025-10-12 13:03:07] NAME="CentOS Linux"
[2025-10-12 13:03:07] VERSION="7 (Core)"
[2025-10-12 13:03:07] ID="centos"
[2025-10-12 13:03:07] ID_LIKE="rhel fedora"
[2025-10-12 13:03:07] VERSION_ID="7"
[2025-10-12 13:03:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 13:03:07] ANSI_COLOR="0;31"
[2025-10-12 13:03:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 13:03:07] HOME_URL="https://www.centos.org/"
[2025-10-12 13:03:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 13:03:07] 
[2025-10-12 13:03:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 13:03:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 13:03:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 13:03:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 13:03:07] 
[2025-10-12 13:03:07] 2025-10-12 17:02:22,087 | INFO     | ***************************************
[2025-10-12 13:03:07] 2025-10-12 17:02:22,589 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 13:03:07] 2025-10-12 17:02:22,602 | INFO     | sufficient remaining disk space (105000206336 B)
[2025-10-12 13:03:07] 2025-10-12 17:02:22,603 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 13:03:07] 2025-10-12 17:02:22,603 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 13:03:07] 2025-10-12 17:02:22,603 | INFO     | update_server=False
[2025-10-12 13:03:07] 2025-10-12 17:02:22,603 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 13:03:07] 2025-10-12 17:02:22,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:03:07] 2025-10-12 17:02:22,604 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 13:03:07] 2025-10-12 17:02:22,604 | INFO     | aborting loop
[2025-10-12 13:03:07] 2025-10-12 17:02:23,016 | INFO     | all data control threads have been joined
[2025-10-12 13:03:07] 2025-10-12 17:02:23,016 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 13:03:07] 2025-10-12 17:02:23,609 | INFO     | [job] retrieve thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:23,610 | INFO     | [job] queue monitor thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:23,611 | INFO     | [job] job monitor thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:23,652 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:23,835 | INFO     | all job control threads have been joined
[2025-10-12 13:03:07] 2025-10-12 17:02:23,845 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:23,888 | INFO     | [payload] failed_post thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:23,927 | INFO     | all payload control threads have been joined
[2025-10-12 13:03:07] 2025-10-12 17:02:23,970 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 13:03:07] 2025-10-12 17:02:24,016 | INFO     | [data] control thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:24,109 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:24,135 | INFO     | [data] copytool_in thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:24,765 | INFO     | [job] validate thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:24,806 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:24,840 | INFO     | [job] control thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:24,895 | INFO     | [payload] validate_post thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:24,932 | INFO     | [payload] control thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:25,972 | INFO     | [data] copytool_out thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:27,024 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 13:03:07] 2025-10-12 17:02:42,815 [wrapper] supervise_pilot (15 min periods counter: 12)
[2025-10-12 13:03:07] 2025-10-12 17:02:53,007 | INFO     | PID=40801 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 13:03:07] 2025-10-12 17:02:53,007 | INFO     | .. there are 4 such processes running
[2025-10-12 13:03:07] 2025-10-12 17:02:53,008 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 13:03:07] 2025-10-12 17:02:53,008 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 13:03:07] 2025-10-12 17:02:53,008 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 13:03:07] 2025-10-12 17:03:00,856 | INFO     | [monitor] cgroup control has ended
[2025-10-12 13:03:07] 2025-10-12 17:03:02,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140361089468224)>', '<ExcThread(monitor, started 140360638510848)>']
[2025-10-12 13:03:07] 2025-10-12 17:03:03,061 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 13:03:07] 2025-10-12 17:03:03,061 | INFO     | [monitor] control thread has ended
[2025-10-12 13:03:07] 2025-10-12 17:03:07,469 | INFO     | all workflow threads have been joined
[2025-10-12 13:03:07] 2025-10-12 17:03:07,469 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 13:03:07] 2025-10-12 17:03:07,470 | INFO     | traces error code: 0
[2025-10-12 13:03:07] 2025-10-12 17:03:07,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 13:03:07] 2025-10-12 17:03:07,577 [wrapper] ==== pilot stdout END ====
[2025-10-12 13:03:07] 2025-10-12 17:03:07,580 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 13:03:07] 2025-10-12 17:03:07,582 [wrapper] pilotpid: 40801
[2025-10-12 13:03:07] 2025-10-12 17:03:07,584 [wrapper] Pilot exit status: 0
[2025-10-12 13:03:07] 2025-10-12 17:03:07,594 [wrapper] pandaids: 6839866160
[2025-10-12 13:03:07] 2025-10-12 17:03:07,641 [wrapper] cleanup supervisor_pilot 48882 40802
[2025-10-12 13:03:07] 2025-10-12 17:03:07,644 [wrapper] Test setup, not cleaning
[2025-10-12 13:03:07] 2025-10-12 17:03:07,646 [wrapper] apfmon messages muted
[2025-10-12 13:03:07] 2025-10-12 17:03:07,648 [wrapper] ==== wrapper stdout END ====
[2025-10-12 13:03:07] 2025-10-12 17:03:07,650 [wrapper] ==== wrapper stderr END ====
[2025-10-12 13:03:07]  *** Error codes and diagnostics ***
[2025-10-12 13:03:07]     "exeErrorCode": 0,
[2025-10-12 13:03:07]     "exeErrorDiag": "",
[2025-10-12 13:03:07]     "pilotErrorCode": 0,
[2025-10-12 13:03:07]     "pilotErrorDiag": "",
[2025-10-12 13:03:07]  *** Listing of results directory ***
[2025-10-12 13:03:07] total 412460
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 05:51 pilot3.tar.gz
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 06:10 queuedata.json
[2025-10-12 13:03:07] -rwx------ 1 boincer umatlas     36292 Oct 12 06:11 runpilot2-wrapper.sh
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 13:03:07] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:17 run_atlas
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:17 job.xml
[2025-10-12 13:03:07] -rw-r--r-- 2 boincer umatlas 220393441 Oct 12 10:17 EVNT.46676267._003611.pool.root.1
[2025-10-12 13:03:07] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:17 start_atlas.sh
[2025-10-12 13:03:07] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:17 shared
[2025-10-12 13:03:07] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 10:17 input.tar.gz
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:17 boinc_lockfile
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas      2549 Oct 12 10:17 pandaJob.out
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas    975528 Oct 12 10:17 agis_schedconf.cvmfs.json
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas   1560580 Oct 12 10:17 agis_ddmendpoints.agis.ALL.json
[2025-10-12 13:03:07] drwx------ 5 boincer umatlas      4096 Oct 12 10:17 pilot3
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas      6035 Oct 12 13:00 init_data.xml
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas 194502758 Oct 12 13:01 HITS.46676269._075878.pool.root.1
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas       529 Oct 12 13:01 boinc_task_state.xml
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas      1046 Oct 12 13:02 memory_monitor_summary.json
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas    402961 Oct 12 13:02 log.46676269._075878.job.log.tgz.1
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas      7839 Oct 12 13:02 heartbeat.json
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 13:02 boinc_mmap_file
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas        95 Oct 12 13:02 pilot_heartbeat.json
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas        27 Oct 12 13:02 wrapper_checkpoint.txt
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas      4822 Oct 12 13:03 pilotlog.txt
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas   1375165 Oct 12 13:03 log.46676269._075878.job.log.1
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas       357 Oct 12 13:03 output.list
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas       620 Oct 12 13:03 runtime_log
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas   1802240 Oct 12 13:03 result.tar.gz
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas      8693 Oct 12 13:03 runtime_log.err
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas       657 Oct 12 13:03 GJFNDm0D8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZQjNDmXbfK1n.diag
[2025-10-12 13:03:07] -rw-r--r-- 1 boincer umatlas     20864 Oct 12 13:03 stderr.txt
[2025-10-12 13:03:07] HITS file was successfully produced:
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas 194502758 Oct 12 13:01 shared/HITS.pool.root.1
[2025-10-12 13:03:07]  *** Contents of shared directory: ***
[2025-10-12 13:03:07] total 407516
[2025-10-12 13:03:07] -rw-r--r-- 2 boincer umatlas 220393441 Oct 12 10:17 ATLAS.root_0
[2025-10-12 13:03:07] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:17 start_atlas.sh
[2025-10-12 13:03:07] -rw-r--r-- 2 boincer umatlas    569683 Oct 12 10:17 input.tar.gz
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas 194502758 Oct 12 13:01 HITS.pool.root.1
[2025-10-12 13:03:07] -rw------- 1 boincer umatlas   1802240 Oct 12 13:03 result.tar.gz
13:03:09 (35571): run_atlas exited; CPU time 74391.483076
13:03:09 (35571): called boinc_finish(0)

</stderr_txt>
]]>

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