Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:19:23 (8945): wrapper (7.7.26015): starting
10:19:23 (8945): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 10:19:23] Arguments: --nthreads 12
[2025-10-12 10:19:23] Threads: 12
[2025-10-12 10:19:23] Checking for CVMFS
[2025-10-12 10:19:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:19:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:19:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:19:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:19:24] 2.11.2.0 2933 222993 98968 151623 3 56 15263163 20275200 1 130560 2 107437436 99.983 13090943 12463 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:19:24] CVMFS is ok
[2025-10-12 10:19:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:19:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:19:24] Further information can be found at the LHC@home message board.
[2025-10-12 10:19:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:19:24] Checking for apptainer binary...
[2025-10-12 10:19:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:19:24] Running /usr/bin/apptainer --version
[2025-10-12 10:19:24] apptainer version 1.3.2-1.el7
[2025-10-12 10:19:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:19:25] c-205-15.aglt2.org
[2025-10-12 10:19:25] apptainer works
[2025-10-12 10:19:25] Set ATHENA_PROC_NUMBER=12
[2025-10-12 10:19:25] Set ATHENA_CORE_NUMBER=12
[2025-10-12 10:19:25] Starting ATLAS job with PandaID=6839989324
[2025-10-12 10:19:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:35:53]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:35:53] 2025-10-12 15:35:00,975 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839989324/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:35:53] 2025-10-12 15:35:00,975 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 11:35:53] 2025-10-12 15:35:00,975 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 11:35:53] 2025-10-12 15:35:00,976 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4359670 B
[2025-10-12 11:35:53] 2025-10-12 15:35:00,976 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15789 B
[2025-10-12 11:35:53] 2025-10-12 15:35:00,976 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:35:53] 2025-10-12 15:35:00,993 | INFO     | sufficient remaining disk space (29365370880 B)
[2025-10-12 11:35:53] 2025-10-12 15:35:00,994 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 11:35:53] 2025-10-12 15:35:00,995 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6839989324: 4658304 B (within 2537553920 B limit)
[2025-10-12 11:35:53] 2025-10-12 15:35:00,995 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6839989324/HITS.46676269._078697.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 11:35:53] 2025-10-12 15:35:00,995 | INFO     | total size of present files: 0 B (workdir size: 4658304 B)
[2025-10-12 11:35:53] 2025-10-12 15:35:00,995 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6839989324/HITS.46676269._078697.pool.root.1 since it does not exist
[2025-10-12 11:35:53] 2025-10-12 15:35:01,085 | INFO     | number of running child processes to parent process 19433: 1
[2025-10-12 11:35:53] 2025-10-12 15:35:01,086 | INFO     | maximum number of monitored processes: 6
[2025-10-12 11:35:53] 2025-10-12 15:35:01,952 | INFO     | time since job start (4521s) is within the limit (172800.0s)
[2025-10-12 11:35:53] 2025-10-12 15:35:02,032 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:35:53] 2025-10-12 15:35:03,321 | INFO     | job 6839989324 has state=finished
[2025-10-12 11:35:53] 2025-10-12 15:35:03,321 | INFO     | preparing for final server update for job 6839989324 in state='finished'
[2025-10-12 11:35:53] 2025-10-12 15:35:03,322 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:35:53] 2025-10-12 15:35:03,322 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:35:53] 2025-10-12 15:35:03,322 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:35:53] 2025-10-12 15:35:03,322 | INFO     | job 6839989324 has finished - writing final server update
[2025-10-12 11:35:53] 2025-10-12 15:35:03,323 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:35:53] 2025-10-12 15:35:03,324 | INFO     | executing command: lscpu
[2025-10-12 11:35:53] 2025-10-12 15:35:03,349 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:35:53] 2025-10-12 15:35:03,594 | INFO     | monitor loop #336: job 0:6839989324 is in state 'finished'
[2025-10-12 11:35:53] 2025-10-12 15:35:03,594 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:35:53] 2025-10-12 15:35:03,958 | INFO     | time since job start (4523s) is within the limit (172800.0s)
[2025-10-12 11:35:53] 2025-10-12 15:35:05,964 | INFO     | time since job start (4525s) is within the limit (172800.0s)
[2025-10-12 11:35:53] 2025-10-12 15:35:06,097 | INFO     | monitor loop #337: job 0:6839989324 is in state 'finished'
[2025-10-12 11:35:53] 2025-10-12 15:35:06,097 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:35:53] 2025-10-12 15:35:07,089 | INFO     | PID=12623 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 11:35:53] 2025-10-12 15:35:08,090 | INFO     | time since job start (4528s) is within the limit (172800.0s)
[2025-10-12 11:35:53] 2025-10-12 15:35:08,600 | INFO     | monitor loop #338: job 0:6839989324 is in state 'finished'
[2025-10-12 11:35:53] 2025-10-12 15:35:08,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:35:53] 2025-10-12 15:35:08,934 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 11:35:53] 2025-10-12 15:35:08,937 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.8333333333333
[2025-10-12 11:35:53] 2025-10-12 15:35:08,940 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839989324/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:35:53] 2025-10-12 15:35:08,940 | INFO     | extracted standard info from prmon json
[2025-10-12 11:35:53] 2025-10-12 15:35:08,941 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:35:53] 2025-10-12 15:35:08,941 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:35:53] 2025-10-12 15:35:08,941 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:35:53] 2025-10-12 15:35:08,941 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:35:53] 2025-10-12 15:35:08,943 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:35:53] 2025-10-12 15:35:08,944 | INFO     | sum of square deviations: 93240818.0
[2025-10-12 11:35:53] 2025-10-12 15:35:08,944 | INFO     | sum of deviations: -6379494680.0
[2025-10-12 11:35:53] 2025-10-12 15:35:08,944 | INFO     | mean x: 1760281127.0
[2025-10-12 11:35:53] 2025-10-12 15:35:08,945 | INFO     | mean y: 2885560.2537313434
[2025-10-12 11:35:53] 2025-10-12 15:35:08,945 | INFO     | -- intersect: 120440525704.0897
[2025-10-12 11:35:53] 2025-10-12 15:35:08,945 | INFO     | intersect: 120440525704.0897
[2025-10-12 11:35:53] 2025-10-12 15:35:08,945 | INFO     | chi2: 0.07545578467037244
[2025-10-12 11:35:53] 2025-10-12 15:35:08,945 | INFO     | -- intersect: 120440525704.0897
[2025-10-12 11:35:53] 2025-10-12 15:35:08,945 | INFO     | current memory leak: -68.42 B/s (using 67 data points, chi2=0.08)
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | could have reported an average CPU frequency of 2052 MHz (6 samples)
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | ..............................
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | . Timing measurements:
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | . get job = 0 s
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | . initial setup = 2 s
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | . payload setup = 6 s
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | . stage-in = 0 s
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | . payload execution = 4490 s
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | . stage-out = 0 s
[2025-10-12 11:35:53] 2025-10-12 15:35:08,946 | INFO     | . log creation = 0 s
[2025-10-12 11:35:53] 2025-10-12 15:35:08,947 | INFO     | ..............................
[2025-10-12 11:35:53] 2025-10-12 15:35:09,028 | INFO     | 
[2025-10-12 11:35:53] 2025-10-12 15:35:09,029 | INFO     | job summary report
[2025-10-12 11:35:53] 2025-10-12 15:35:09,029 | INFO     | --------------------------------------------------
[2025-10-12 11:35:53] 2025-10-12 15:35:09,029 | INFO     | PanDA job id: 6839989324
[2025-10-12 11:35:53] 2025-10-12 15:35:09,029 | INFO     | task id: 46676269
[2025-10-12 11:35:53] 2025-10-12 15:35:09,029 | INFO     | errors: (none)
[2025-10-12 11:35:53] 2025-10-12 15:35:09,029 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:35:53] 2025-10-12 15:35:09,030 | INFO     | pilot state: finished 
[2025-10-12 11:35:53] 2025-10-12 15:35:09,030 | INFO     | transexitcode: 0
[2025-10-12 11:35:53] 2025-10-12 15:35:09,030 | INFO     | exeerrorcode: 0
[2025-10-12 11:35:53] 2025-10-12 15:35:09,030 | INFO     | exeerrordiag: 
[2025-10-12 11:35:53] 2025-10-12 15:35:09,030 | INFO     | exitcode: 0
[2025-10-12 11:35:53] 2025-10-12 15:35:09,030 | INFO     | exitmsg: OK
[2025-10-12 11:35:53] 2025-10-12 15:35:09,030 | INFO     | cpuconsumptiontime: 46988 s
[2025-10-12 11:35:53] 2025-10-12 15:35:09,031 | INFO     | nevents: 400
[2025-10-12 11:35:53] 2025-10-12 15:35:09,031 | INFO     | neventsw: 0
[2025-10-12 11:35:53] 2025-10-12 15:35:09,031 | INFO     | pid: 19433
[2025-10-12 11:35:53] 2025-10-12 15:35:09,031 | INFO     | pgrp: 19433
[2025-10-12 11:35:53] 2025-10-12 15:35:09,031 | INFO     | corecount: 12
[2025-10-12 11:35:53] 2025-10-12 15:35:09,031 | INFO     | event service: False
[2025-10-12 11:35:53] 2025-10-12 15:35:09,032 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 4500: 2375281, 4501: 2375280, 4503: 2384462, 4505: 2384546, 4512: 2384740}
[2025-10-12 11:35:53] 2025-10-12 15:35:09,032 | INFO     | --------------------------------------------------
[2025-10-12 11:35:53] 2025-10-12 15:35:09,032 | INFO     | 
[2025-10-12 11:35:53] 2025-10-12 15:35:09,032 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 11:35:53] 2025-10-12 15:35:09,056 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,056 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,056 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,056 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,057 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,057 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,057 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,057 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,057 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,057 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,058 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,058 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,058 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,059 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:35:53] 2025-10-12 15:35:09,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,059 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:35:53] 2025-10-12 15:35:09,059 | INFO     | job 6839989324 has completed (purged errors)
[2025-10-12 11:35:53] 2025-10-12 15:35:09,060 | INFO     | overall cleanup function is called
[2025-10-12 11:35:53] 2025-10-12 15:35:10,068 | INFO     | --- collectZombieJob: --- 10, [19433]
[2025-10-12 11:35:53] 2025-10-12 15:35:10,068 | INFO     | zombie collector waiting for pid 19433
[2025-10-12 11:35:53] 2025-10-12 15:35:10,068 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:35:53] 2025-10-12 15:35:10,069 | INFO     | collected zombie processes
[2025-10-12 11:35:53] 2025-10-12 15:35:10,069 | INFO     | will attempt to kill all subprocesses of pid=19433
[2025-10-12 11:35:53] 2025-10-12 15:35:10,166 | INFO     | process IDs to be killed: [19433] (in reverse order)
[2025-10-12 11:35:53] 2025-10-12 15:35:10,218 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:35:53] 2025-10-12 15:35:10,219 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:35:53] 2025-10-12 15:35:10,223 | INFO     | did not find any defunct processes belonging to 19433
[2025-10-12 11:35:53] 2025-10-12 15:35:10,226 | INFO     | did not find any defunct processes belonging to 19433
[2025-10-12 11:35:53] 2025-10-12 15:35:10,226 | INFO     | ready for new job
[2025-10-12 11:35:53] 2025-10-12 15:35:10,226 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:35:53] 2025-10-12 15:35:10,228 | INFO     | ***************************************
[2025-10-12 11:35:53] 2025-10-12 15:35:10,228 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:35:53] 2025-10-12 15:35:10,228 | INFO     | ***************************************
[2025-10-12 11:35:53] 2025-10-12 15:35:10,228 | INFO     | 
[2025-10-12 11:35:53] 2025-10-12 15:35:10,229 | INFO     | architecture information:
[2025-10-12 11:35:53] 2025-10-12 15:35:10,229 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:35:53] 2025-10-12 15:35:10,245 | INFO     | cat /etc/os-release:
[2025-10-12 11:35:53] NAME="CentOS Linux"
[2025-10-12 11:35:53] VERSION="7 (Core)"
[2025-10-12 11:35:53] ID="centos"
[2025-10-12 11:35:53] ID_LIKE="rhel fedora"
[2025-10-12 11:35:53] VERSION_ID="7"
[2025-10-12 11:35:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:35:53] ANSI_COLOR="0;31"
[2025-10-12 11:35:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:35:53] HOME_URL="https://www.centos.org/"
[2025-10-12 11:35:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:35:53] 
[2025-10-12 11:35:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:35:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:35:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:35:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:35:53] 
[2025-10-12 11:35:53] 2025-10-12 15:35:10,245 | INFO     | ***************************************
[2025-10-12 11:35:53] 2025-10-12 15:35:10,748 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:35:53] 2025-10-12 15:35:10,766 | INFO     | sufficient remaining disk space (29370613760 B)
[2025-10-12 11:35:53] 2025-10-12 15:35:10,767 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:35:53] 2025-10-12 15:35:10,767 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:35:53] 2025-10-12 15:35:10,767 | INFO     | update_server=False
[2025-10-12 11:35:53] 2025-10-12 15:35:10,767 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:35:53] 2025-10-12 15:35:10,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:35:53] 2025-10-12 15:35:10,768 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:35:53] 2025-10-12 15:35:10,925 | INFO     | all job control threads have been joined
[2025-10-12 11:35:53] 2025-10-12 15:35:11,041 | INFO     | all payload control threads have been joined
[2025-10-12 11:35:53] 2025-10-12 15:35:11,103 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 11:35:53] 2025-10-12 15:35:11,104 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 11:35:53] 2025-10-12 15:35:11,104 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:35:53] 2025-10-12 15:35:11,104 | INFO     | will abort loop
[2025-10-12 11:35:53] 2025-10-12 15:35:11,138 | INFO     | all data control threads have been joined
[2025-10-12 11:35:53] 2025-10-12 15:35:11,772 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:11,773 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:11,844 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:11,930 | INFO     | [job] control thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:12,046 | INFO     | [payload] control thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:12,098 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:12,109 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:12,143 | INFO     | [data] control thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:12,362 | INFO     | [job] validate thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:12,396 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:12,483 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:12,623 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:35:53] 2025-10-12 15:35:12,774 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:12,816 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:13,000 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:13,169 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:16,629 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:35:53] 2025-10-12 15:35:41,294 | INFO     | PID=12623 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 11:35:53] 2025-10-12 15:35:41,295 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:35:53] 2025-10-12 15:35:41,295 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:35:53] 2025-10-12 15:35:41,295 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:35:53] 2025-10-12 15:35:47,316 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:35:53] 2025-10-12 15:35:48,194 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139924831668032)>', '<ExcThread(monitor, started 139924263139072)>']
[2025-10-12 11:35:53] 2025-10-12 15:35:48,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:35:53] 2025-10-12 15:35:48,328 | INFO     | [monitor] control thread has ended
[2025-10-12 11:35:53] 2025-10-12 15:35:53,199 | INFO     | all workflow threads have been joined
[2025-10-12 11:35:53] 2025-10-12 15:35:53,199 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:35:53] 2025-10-12 15:35:53,205 | INFO     | traces error code: 0
[2025-10-12 11:35:53] 2025-10-12 15:35:53,206 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:35:53] 2025-10-12 15:35:53,294 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:35:53] 2025-10-12 15:35:53,298 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:35:53] 2025-10-12 15:35:53,302 [wrapper] pilotpid: 12623
[2025-10-12 11:35:53] 2025-10-12 15:35:53,306 [wrapper] Pilot exit status: 0
[2025-10-12 11:35:53] 2025-10-12 15:35:53,320 [wrapper] pandaids: 6839989324
[2025-10-12 11:35:53] 2025-10-12 15:35:53,367 [wrapper] cleanup supervisor_pilot   781 12624
[2025-10-12 11:35:53] 2025-10-12 15:35:53,371 [wrapper] Test setup, not cleaning
[2025-10-12 11:35:53] 2025-10-12 15:35:53,375 [wrapper] apfmon messages muted
[2025-10-12 11:35:53] 2025-10-12 15:35:53,379 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:35:53] 2025-10-12 15:35:53,383 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:35:53]  *** Error codes and diagnostics ***
[2025-10-12 11:35:53]     "exeErrorCode": 0,
[2025-10-12 11:35:53]     "exeErrorDiag": "",
[2025-10-12 11:35:53]     "pilotErrorCode": 0,
[2025-10-12 11:35:53]     "pilotErrorDiag": "",
[2025-10-12 11:35:53]  *** Listing of results directory ***
[2025-10-12 11:35:53] total 406048
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:50 queuedata.json
[2025-10-12 11:35:53] -rwx------ 1 boincer umatlas     36292 Oct 12 08:51 runpilot2-wrapper.sh
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:35:53] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:19 run_atlas
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:19 job.xml
[2025-10-12 11:35:53] -rw-r--r-- 2 boincer umatlas 220831213 Oct 12 10:19 EVNT.46676267._003821.pool.root.1
[2025-10-12 11:35:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:19 start_atlas.sh
[2025-10-12 11:35:53] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:19 shared
[2025-10-12 11:35:53] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 10:19 input.tar.gz
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:19 boinc_lockfile
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 10:19 pandaJob.out
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas    975528 Oct 12 10:19 agis_schedconf.cvmfs.json
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas   1560580 Oct 12 10:19 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:35:53] drwx------ 5 boincer umatlas      4096 Oct 12 10:19 pilot3
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 11:31 init_data.xml
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas 188971383 Oct 12 11:34 HITS.46676269._078697.pool.root.1
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas       530 Oct 12 11:34 boinc_task_state.xml
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas      1049 Oct 12 11:34 memory_monitor_summary.json
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas    387639 Oct 12 11:34 log.46676269._078697.job.log.tgz.1
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas      7852 Oct 12 11:35 heartbeat.json
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas        27 Oct 12 11:35 wrapper_checkpoint.txt
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 11:35 boinc_mmap_file
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas        95 Oct 12 11:35 pilot_heartbeat.json
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas      4932 Oct 12 11:35 pilotlog.txt
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas    657054 Oct 12 11:35 log.46676269._078697.job.log.1
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas       357 Oct 12 11:35 output.list
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas       620 Oct 12 11:35 runtime_log
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas   1064960 Oct 12 11:35 result.tar.gz
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 11:35 runtime_log.err
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas       659 Oct 12 11:35 hqdLDm2iAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmUtjNDmg7eb0n.diag
[2025-10-12 11:35:53] -rw-r--r-- 1 boincer umatlas     22503 Oct 12 11:35 stderr.txt
[2025-10-12 11:35:53] HITS file was successfully produced:
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas 188971383 Oct 12 11:34 shared/HITS.pool.root.1
[2025-10-12 11:35:53]  *** Contents of shared directory: ***
[2025-10-12 11:35:53] total 401820
[2025-10-12 11:35:53] -rw-r--r-- 2 boincer umatlas 220831213 Oct 12 10:19 ATLAS.root_0
[2025-10-12 11:35:53] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:19 start_atlas.sh
[2025-10-12 11:35:53] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 10:19 input.tar.gz
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas 188971383 Oct 12 11:34 HITS.pool.root.1
[2025-10-12 11:35:53] -rw------- 1 boincer umatlas   1064960 Oct 12 11:35 result.tar.gz
11:35:55 (8945): run_atlas exited; CPU time 46961.517392
11:35:55 (8945): called boinc_finish(0)

</stderr_txt>
]]>

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