Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:11:36 (3020183): wrapper (7.7.26015): starting
02:11:36 (3020183): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 02:11:36] Arguments: --nthreads 3
[2025-10-13 02:11:36] Threads: 3
[2025-10-13 02:11:36] Checking for CVMFS
[2025-10-13 02:11:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 02:11:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 02:11:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 02:11:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 02:11:37] 2.9.2.0 1494257 5073 83016 151641 0 57 24167973 36864000 0 130560 0 4010693 99.991 173349 822 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
[2025-10-13 02:11:37] CVMFS is ok
[2025-10-13 02:11:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 02:11:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 02:11:37] Further information can be found at the LHC@home message board.
[2025-10-13 02:11:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 02:11:37] Checking for apptainer binary...
[2025-10-13 02:11:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 02:11:37] Running /usr/bin/apptainer --version
[2025-10-13 02:11:37] apptainer version 1.4.1-1.1
[2025-10-13 02:11:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 02:11:37] thA331a
[2025-10-13 02:11:37] apptainer works
[2025-10-13 02:11:37] Set ATHENA_PROC_NUMBER=3
[2025-10-13 02:11:37] Set ATHENA_CORE_NUMBER=3
[2025-10-13 02:11:37] Starting ATLAS job with PandaID=6839989379
[2025-10-13 02:11:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 03:32:54]  *** The last 200 lines of the pilot log: ***
[2025-10-13 03:32:54] 2025-10-13 01:32:16,568 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 03:32:54] 2025-10-13 01:32:16,568 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 03:32:54] 2025-10-13 01:32:16,568 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 03:32:54] 2025-10-13 01:32:16,568 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 03:32:54] 2025-10-13 01:32:16,568 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 03:32:54] 2025-10-13 01:32:16,568 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 03:32:54] 2025-10-13 01:32:16,568 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 03:32:54] 2025-10-13 01:32:16,568 | INFO     | job 6839989379 has completed (purged errors)
[2025-10-13 03:32:54] 2025-10-13 01:32:16,568 | INFO     | overall cleanup function is called
[2025-10-13 03:32:54] 2025-10-13 01:32:17,575 | INFO     | --- collectZombieJob: --- 10, [3030324]
[2025-10-13 03:32:54] 2025-10-13 01:32:17,575 | INFO     | zombie collector waiting for pid 3030324
[2025-10-13 03:32:54] 2025-10-13 01:32:17,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 03:32:54] 2025-10-13 01:32:17,575 | INFO     | collected zombie processes
[2025-10-13 03:32:54] 2025-10-13 01:32:17,575 | INFO     | will attempt to kill all subprocesses of pid=3030324
[2025-10-13 03:32:54] 2025-10-13 01:32:17,618 | INFO     | process IDs to be killed: [3030324] (in reverse order)
[2025-10-13 03:32:54] 2025-10-13 01:32:17,641 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 03:32:54] 2025-10-13 01:32:17,641 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 03:32:54] 2025-10-13 01:32:17,642 | INFO     | did not find any defunct processes belonging to 3030324
[2025-10-13 03:32:54] 2025-10-13 01:32:17,643 | INFO     | did not find any defunct processes belonging to 3030324
[2025-10-13 03:32:54] 2025-10-13 01:32:17,643 | INFO     | ready for new job
[2025-10-13 03:32:54] 2025-10-13 01:32:17,643 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 03:32:54] 2025-10-13 01:32:17,644 | INFO     | ***************************************
[2025-10-13 03:32:54] 2025-10-13 01:32:17,644 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 03:32:54] 2025-10-13 01:32:17,644 | INFO     | ***************************************
[2025-10-13 03:32:54] 2025-10-13 01:32:17,644 | INFO     | 
[2025-10-13 03:32:54] 2025-10-13 01:32:17,644 | INFO     | architecture information:
[2025-10-13 03:32:54] 2025-10-13 01:32:17,644 | INFO     | executing command: cat /etc/os-release
[2025-10-13 03:32:54] 2025-10-13 01:32:17,653 | INFO     | cat /etc/os-release:
[2025-10-13 03:32:54] NAME="CentOS Linux"
[2025-10-13 03:32:54] VERSION="7 (Core)"
[2025-10-13 03:32:54] ID="centos"
[2025-10-13 03:32:54] ID_LIKE="rhel fedora"
[2025-10-13 03:32:54] VERSION_ID="7"
[2025-10-13 03:32:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 03:32:54] ANSI_COLOR="0;31"
[2025-10-13 03:32:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 03:32:54] HOME_URL="https://www.centos.org/"
[2025-10-13 03:32:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 03:32:54] 
[2025-10-13 03:32:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 03:32:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 03:32:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 03:32:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 03:32:54] 
[2025-10-13 03:32:54] 2025-10-13 01:32:17,653 | INFO     | ***************************************
[2025-10-13 03:32:54] 2025-10-13 01:32:18,156 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 03:32:54] 2025-10-13 01:32:18,168 | INFO     | sufficient remaining disk space (335793881088 B)
[2025-10-13 03:32:54] 2025-10-13 01:32:18,169 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 03:32:54] 2025-10-13 01:32:18,169 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 03:32:54] 2025-10-13 01:32:18,169 | INFO     | update_server=False
[2025-10-13 03:32:54] 2025-10-13 01:32:18,169 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 03:32:54] 2025-10-13 01:32:18,169 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 03:32:54] 2025-10-13 01:32:18,169 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 03:32:54] 2025-10-13 01:32:18,584 | INFO     | all data control threads have been joined
[2025-10-13 03:32:54] 2025-10-13 01:32:18,630 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:32:54] 2025-10-13 01:32:18,631 | INFO     | aborting loop
[2025-10-13 03:32:54] 2025-10-13 01:32:18,727 | INFO     | all payload control threads have been joined
[2025-10-13 03:32:54] 2025-10-13 01:32:19,174 | INFO     | [job] retrieve thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:19,184 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:19,201 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:19,375 | INFO     | all job control threads have been joined
[2025-10-13 03:32:54] 2025-10-13 01:32:19,484 | INFO     | [payload] validate_post thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:19,555 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:19,590 | INFO     | [data] control thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:19,636 | INFO     | [job] job monitor thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:19,729 | INFO     | [payload] failed_post thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:19,732 | INFO     | [payload] control thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:20,049 | INFO     | [data] copytool_in thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:20,175 | INFO     | [data] copytool_out thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:20,380 | INFO     | [job] control thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:20,457 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:20,639 | INFO     | [job] validate thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:21,137 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 03:32:54] 2025-10-13 01:32:22,143 | INFO     | [job] queue monitor thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:22,176 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 03:32:54] 2025-10-13 01:32:47,942 | INFO     | [monitor] cgroup control has ended
[2025-10-13 03:32:54] 2025-10-13 01:32:48,227 | INFO     | PID=3023895 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 03:32:54] 2025-10-13 01:32:48,227 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 03:32:54] 2025-10-13 01:32:48,227 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 03:32:54] 2025-10-13 01:32:48,227 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 03:32:54] 2025-10-13 01:32:49,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140693822740288)>', '<ExcThread(monitor, started 140693550896896)>']
[2025-10-13 03:32:54] 2025-10-13 01:32:50,238 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 03:32:54] 2025-10-13 01:32:50,238 | INFO     | [monitor] control thread has ended
[2025-10-13 03:32:54] 2025-10-13 01:32:54,572 | INFO     | all workflow threads have been joined
[2025-10-13 03:32:54] 2025-10-13 01:32:54,572 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 03:32:54] 2025-10-13 01:32:54,573 | INFO     | traces error code: 0
[2025-10-13 03:32:54] 2025-10-13 01:32:54,573 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 03:32:54] 2025-10-13 01:32:54,623 [wrapper] ==== pilot stdout END ====
[2025-10-13 03:32:54] 2025-10-13 01:32:54,625 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 03:32:54] 2025-10-13 01:32:54,627 [wrapper] pilotpid: 3023895
[2025-10-13 03:32:54] 2025-10-13 01:32:54,629 [wrapper] Pilot exit status: 0
[2025-10-13 03:32:54] 2025-10-13 01:32:54,636 [wrapper] pandaids: 6839989379
[2025-10-13 03:32:54] 2025-10-13 01:32:54,652 [wrapper] cleanup supervisor_pilot 3042437 3023896
[2025-10-13 03:32:54] 2025-10-13 01:32:54,655 [wrapper] Test setup, not cleaning
[2025-10-13 03:32:54] 2025-10-13 01:32:54,657 [wrapper] apfmon messages muted
[2025-10-13 03:32:54] 2025-10-13 01:32:54,659 [wrapper] ==== wrapper stdout END ====
[2025-10-13 03:32:54] 2025-10-13 01:32:54,661 [wrapper] ==== wrapper stderr END ====
[2025-10-13 03:32:54]  *** Error codes and diagnostics ***
[2025-10-13 03:32:54]     "exeErrorCode": 0,
[2025-10-13 03:32:54]     "exeErrorDiag": "",
[2025-10-13 03:32:54]     "pilotErrorCode": 0,
[2025-10-13 03:32:54]     "pilotErrorDiag": "",
[2025-10-13 03:32:54]  *** Listing of results directory ***
[2025-10-13 03:32:54] total 404736
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc    557409 Oct 12 14:35 pilot3.tar.gz
[2025-10-13 03:32:54] -rwx------ 1 boinc boinc     36292 Oct 12 14:50 runpilot2-wrapper.sh
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc      5112 Oct 12 14:50 queuedata.json
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc       100 Oct 13 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 03:32:54] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 02:11 run_atlas
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc       105 Oct 13 02:11 job.xml
[2025-10-13 03:32:54] -rw-r--r-- 2 boinc boinc 219742147 Oct 13 02:11 EVNT.46676267._003829.pool.root.1
[2025-10-13 03:32:54] -rw-r--r-- 2 boinc boinc    569675 Oct 13 02:11 input.tar.gz
[2025-10-13 03:32:54] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:11 start_atlas.sh
[2025-10-13 03:32:54] drwxrwx--x 2 boinc boinc      4096 Oct 13 02:11 shared
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:11 boinc_setup_complete
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc      6440 Oct 13 02:11 init_data.xml
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc         0 Oct 13 02:11 boinc_lockfile
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc      2550 Oct 13 02:11 pandaJob.out
[2025-10-13 03:32:54] -rw------- 1 boinc boinc    975603 Oct 13 02:11 agis_schedconf.cvmfs.json
[2025-10-13 03:32:54] -rw------- 1 boinc boinc   1560580 Oct 13 02:11 agis_ddmendpoints.agis.ALL.json
[2025-10-13 03:32:54] drwx------ 5 boinc boinc      4096 Oct 13 02:11 pilot3
[2025-10-13 03:32:54] -rw------- 1 boinc boinc 188863107 Oct 13 03:31 HITS.46676269._078752.pool.root.1
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc       529 Oct 13 03:32 boinc_task_state.xml
[2025-10-13 03:32:54] -rw------- 1 boinc boinc        95 Oct 13 03:32 pilot_heartbeat.json
[2025-10-13 03:32:54] -rw------- 1 boinc boinc      1019 Oct 13 03:32 memory_monitor_summary.json
[2025-10-13 03:32:54] -rw------- 1 boinc boinc    262510 Oct 13 03:32 log.46676269._078752.job.log.tgz.1
[2025-10-13 03:32:54] -rw------- 1 boinc boinc      7760 Oct 13 03:32 heartbeat.json
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc      8192 Oct 13 03:32 boinc_mmap_file
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc        27 Oct 13 03:32 wrapper_checkpoint.txt
[2025-10-13 03:32:54] -rw------- 1 boinc boinc      4752 Oct 13 03:32 pilotlog.txt
[2025-10-13 03:32:54] -rw------- 1 boinc boinc    712056 Oct 13 03:32 log.46676269._078752.job.log.1
[2025-10-13 03:32:54] -rw------- 1 boinc boinc       357 Oct 13 03:32 output.list
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc       620 Oct 13 03:32 runtime_log
[2025-10-13 03:32:54] -rw------- 1 boinc boinc    993280 Oct 13 03:32 result.tar.gz
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc      8782 Oct 13 03:32 runtime_log.err
[2025-10-13 03:32:54] -rw------- 1 boinc boinc       659 Oct 13 03:32 bieLDm3hAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYsjNDmuDWqhn.diag
[2025-10-13 03:32:54] -rw-r--r-- 1 boinc boinc     11522 Oct 13 03:32 stderr.txt
[2025-10-13 03:32:54] HITS file was successfully produced:
[2025-10-13 03:32:54] -rw------- 1 boinc boinc 188863107 Oct 13 03:31 shared/HITS.pool.root.1
[2025-10-13 03:32:54]  *** Contents of shared directory: ***
[2025-10-13 03:32:54] total 400588
[2025-10-13 03:32:54] -rw-r--r-- 2 boinc boinc 219742147 Oct 13 02:11 ATLAS.root_0
[2025-10-13 03:32:54] -rw-r--r-- 2 boinc boinc    569675 Oct 13 02:11 input.tar.gz
[2025-10-13 03:32:54] -rw-r--r-- 2 boinc boinc     15120 Oct 13 02:11 start_atlas.sh
[2025-10-13 03:32:54] -rw------- 1 boinc boinc 188863107 Oct 13 03:31 HITS.pool.root.1
[2025-10-13 03:32:54] -rw------- 1 boinc boinc    993280 Oct 13 03:32 result.tar.gz
03:32:56 (3020183): run_atlas exited; CPU time 13725.267370
03:32:56 (3020183): called boinc_finish(0)

</stderr_txt>
]]>

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