Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:06:45 (28030): wrapper (7.7.26015): starting
10:06:45 (28030): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 10:06:45] Arguments: --nthreads 12
[2025-10-12 10:06:45] Threads: 12
[2025-10-12 10:06:45] Checking for CVMFS
[2025-10-12 10:06:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:06:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:06:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:06:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:06:45] 2.11.2.0 3297 222934 96368 151621 0 57 14592132 20275201 1 130560 2 109184619 99.984 12978303 12306 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:06:45] CVMFS is ok
[2025-10-12 10:06:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:06:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:06:45] Further information can be found at the LHC@home message board.
[2025-10-12 10:06:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:06:45] Checking for apptainer binary...
[2025-10-12 10:06:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:06:45] Running /usr/bin/apptainer --version
[2025-10-12 10:06:45] apptainer version 1.3.2-1.el7
[2025-10-12 10:06:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:06:46] c-205-22.aglt2.org
[2025-10-12 10:06:46] apptainer works
[2025-10-12 10:06:46] Set ATHENA_PROC_NUMBER=12
[2025-10-12 10:06:46] Set ATHENA_CORE_NUMBER=12
[2025-10-12 10:06:46] Starting ATLAS job with PandaID=6839988349
[2025-10-12 10:06:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:19:34]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:19:34]  protocol_id=None
[2025-10-12 11:19:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 11:19:34]  replicas=None
[2025-10-12 11:19:34]  scope=mc23_13p6TeV
[2025-10-12 11:19:34]  status=None
[2025-10-12 11:19:34]  status_code=0
[2025-10-12 11:19:34]  storage_token=
[2025-10-12 11:19:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839988349/log.46676269._078442.job.log.tgz.1
[2025-10-12 11:19:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/3e/log.46676269._078442.job.log.tgz.1
[2025-10-12 11:19:34]  workdir=None
[2025-10-12 11:19:34] ]
[2025-10-12 11:19:34] 2025-10-12 15:18:56,057 | INFO     | transferring file log.46676269._078442.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839988349/log.46676269._078442.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 11:19:34] 2025-10-12 15:18:56,058 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839988349/log.46676269._078442.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._078442.job
[2025-10-12 11:19:34] 2025-10-12 15:18:56,081 | INFO     | adding to output.list: log.46676269._078442.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e2/3e/log.46676269._078442.job.log.tg
[2025-10-12 11:19:34] 2025-10-12 15:18:56,082 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 11:19:34] 2025-10-12 15:18:56,082 | INFO     | summary of transferred files:
[2025-10-12 11:19:34] 2025-10-12 15:18:56,082 | INFO     |  -- lfn=log.46676269._078442.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 11:19:34] 2025-10-12 15:18:56,083 | INFO     | stage-out finished correctly
[2025-10-12 11:19:34] 2025-10-12 15:18:56,165 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:19:34] 2025-10-12 15:18:56,245 | INFO     | job 6839988349 has state=finished
[2025-10-12 11:19:34] 2025-10-12 15:18:56,246 | INFO     | preparing for final server update for job 6839988349 in state='finished'
[2025-10-12 11:19:34] 2025-10-12 15:18:56,246 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:19:34] 2025-10-12 15:18:56,247 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:19:34] 2025-10-12 15:18:56,247 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:19:34] 2025-10-12 15:18:56,247 | INFO     | job 6839988349 has finished - writing final server update
[2025-10-12 11:19:34] 2025-10-12 15:18:56,247 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:19:34] 2025-10-12 15:18:56,248 | INFO     | executing command: lscpu
[2025-10-12 11:19:34] 2025-10-12 15:18:56,273 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:19:34] 2025-10-12 15:18:56,896 | INFO     | time since job start (4314s) is within the limit (172800.0s)
[2025-10-12 11:19:34] 2025-10-12 15:18:58,903 | INFO     | time since job start (4316s) is within the limit (172800.0s)
[2025-10-12 11:19:34] 2025-10-12 15:19:00,908 | INFO     | time since job start (4318s) is within the limit (172800.0s)
[2025-10-12 11:19:34] 2025-10-12 15:19:01,030 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 11:19:34] 2025-10-12 15:19:01,033 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 11:19:34] 2025-10-12 15:19:01,034 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839988349/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:19:34] 2025-10-12 15:19:01,035 | INFO     | extracted standard info from prmon json
[2025-10-12 11:19:34] 2025-10-12 15:19:01,035 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:19:34] 2025-10-12 15:19:01,035 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:19:34] 2025-10-12 15:19:01,035 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:19:34] 2025-10-12 15:19:01,036 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:19:34] 2025-10-12 15:19:01,037 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:19:34] 2025-10-12 15:19:01,037 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 11:19:34] 2025-10-12 15:19:01,038 | INFO     | sum of deviations: -488107268.5
[2025-10-12 11:19:34] 2025-10-12 15:19:01,038 | INFO     | mean x: 1760280277.5
[2025-10-12 11:19:34] 2025-10-12 15:19:01,038 | INFO     | mean y: 2681357.453125
[2025-10-12 11:19:34] 2025-10-12 15:19:01,038 | INFO     | -- intersect: 10575354203.838148
[2025-10-12 11:19:34] 2025-10-12 15:19:01,038 | INFO     | intersect: 10575354203.838148
[2025-10-12 11:19:34] 2025-10-12 15:19:01,038 | INFO     | chi2: 0.02077476649239258
[2025-10-12 11:19:34] 2025-10-12 15:19:01,038 | INFO     | -- intersect: 10575354203.838148
[2025-10-12 11:19:34] 2025-10-12 15:19:01,039 | INFO     | current memory leak: -6.01 B/s (using 64 data points, chi2=0.02)
[2025-10-12 11:19:34] 2025-10-12 15:19:01,039 | INFO     | could have reported an average CPU frequency of 2034 MHz (6 samples)
[2025-10-12 11:19:34] 2025-10-12 15:19:01,039 | INFO     | ..............................
[2025-10-12 11:19:34] 2025-10-12 15:19:01,039 | INFO     | . Timing measurements:
[2025-10-12 11:19:34] 2025-10-12 15:19:01,039 | INFO     | . get job = 0 s
[2025-10-12 11:19:34] 2025-10-12 15:19:01,039 | INFO     | . initial setup = 2 s
[2025-10-12 11:19:34] 2025-10-12 15:19:01,039 | INFO     | . payload setup = 7 s
[2025-10-12 11:19:34] 2025-10-12 15:19:01,040 | INFO     | . stage-in = 0 s
[2025-10-12 11:19:34] 2025-10-12 15:19:01,040 | INFO     | . payload execution = 4286 s
[2025-10-12 11:19:34] 2025-10-12 15:19:01,040 | INFO     | . stage-out = 0 s
[2025-10-12 11:19:34] 2025-10-12 15:19:01,040 | INFO     | . log creation = 0 s
[2025-10-12 11:19:34] 2025-10-12 15:19:01,040 | INFO     | ..............................
[2025-10-12 11:19:34] 2025-10-12 15:19:01,592 | INFO     | 
[2025-10-12 11:19:34] 2025-10-12 15:19:01,592 | INFO     | job summary report
[2025-10-12 11:19:34] 2025-10-12 15:19:01,593 | INFO     | --------------------------------------------------
[2025-10-12 11:19:34] 2025-10-12 15:19:01,593 | INFO     | PanDA job id: 6839988349
[2025-10-12 11:19:34] 2025-10-12 15:19:01,593 | INFO     | task id: 46676269
[2025-10-12 11:19:34] 2025-10-12 15:19:01,593 | INFO     | errors: (none)
[2025-10-12 11:19:34] 2025-10-12 15:19:01,593 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:19:34] 2025-10-12 15:19:01,593 | INFO     | pilot state: finished 
[2025-10-12 11:19:34] 2025-10-12 15:19:01,594 | INFO     | transexitcode: 0
[2025-10-12 11:19:34] 2025-10-12 15:19:01,594 | INFO     | exeerrorcode: 0
[2025-10-12 11:19:34] 2025-10-12 15:19:01,594 | INFO     | exeerrordiag: 
[2025-10-12 11:19:34] 2025-10-12 15:19:01,594 | INFO     | exitcode: 0
[2025-10-12 11:19:34] 2025-10-12 15:19:01,594 | INFO     | exitmsg: OK
[2025-10-12 11:19:34] 2025-10-12 15:19:01,594 | INFO     | cpuconsumptiontime: 46168 s
[2025-10-12 11:19:34] 2025-10-12 15:19:01,595 | INFO     | nevents: 400
[2025-10-12 11:19:34] 2025-10-12 15:19:01,595 | INFO     | neventsw: 0
[2025-10-12 11:19:34] 2025-10-12 15:19:01,595 | INFO     | pid: 5843
[2025-10-12 11:19:34] 2025-10-12 15:19:01,595 | INFO     | pgrp: 5843
[2025-10-12 11:19:34] 2025-10-12 15:19:01,595 | INFO     | corecount: 12
[2025-10-12 11:19:34] 2025-10-12 15:19:01,595 | INFO     | event service: False
[2025-10-12 11:19:34] 2025-10-12 15:19:01,596 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 4297: 2375195, 4298: 2384377, 4303: 2384515}
[2025-10-12 11:19:34] 2025-10-12 15:19:01,596 | INFO     | --------------------------------------------------
[2025-10-12 11:19:34] 2025-10-12 15:19:01,596 | INFO     | 
[2025-10-12 11:19:34] 2025-10-12 15:19:01,596 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 11:19:34] 2025-10-12 15:19:01,620 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,621 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,621 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,621 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,621 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,621 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,622 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,622 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,622 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,622 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,622 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,623 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,623 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,623 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,624 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:19:34] 2025-10-12 15:19:01,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,624 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:19:34] 2025-10-12 15:19:01,624 | INFO     | job 6839988349 has completed (purged errors)
[2025-10-12 11:19:34] 2025-10-12 15:19:01,624 | INFO     | overall cleanup function is called
[2025-10-12 11:19:34] 2025-10-12 15:19:02,083 | WARNING  | process 5843 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 11:19:34] 2025-10-12 15:19:02,158 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:19:34] 2025-10-12 15:19:02,247 | INFO     | number of running child processes to parent process 5843: 1
[2025-10-12 11:19:34] 2025-10-12 15:19:02,247 | INFO     | maximum number of monitored processes: 6
[2025-10-12 11:19:34] 2025-10-12 15:19:02,247 | INFO     | aborting job monitoring since job object (job id=6839988349) has expired
[2025-10-12 11:19:34] 2025-10-12 15:19:02,632 | INFO     | --- collectZombieJob: --- 10, [5843]
[2025-10-12 11:19:34] 2025-10-12 15:19:02,633 | INFO     | zombie collector waiting for pid 5843
[2025-10-12 11:19:34] 2025-10-12 15:19:02,639 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:19:34] 2025-10-12 15:19:02,639 | INFO     | collected zombie processes
[2025-10-12 11:19:34] 2025-10-12 15:19:02,639 | INFO     | will attempt to kill all subprocesses of pid=5843
[2025-10-12 11:19:34] 2025-10-12 15:19:02,729 | INFO     | process IDs to be killed: [5843] (in reverse order)
[2025-10-12 11:19:34] 2025-10-12 15:19:02,778 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:19:34] 2025-10-12 15:19:02,778 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:19:34] 2025-10-12 15:19:02,782 | INFO     | did not find any defunct processes belonging to 5843
[2025-10-12 11:19:34] 2025-10-12 15:19:02,786 | INFO     | did not find any defunct processes belonging to 5843
[2025-10-12 11:19:34] 2025-10-12 15:19:02,786 | INFO     | ready for new job
[2025-10-12 11:19:34] 2025-10-12 15:19:02,786 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:19:34] 2025-10-12 15:19:02,787 | INFO     | ***************************************
[2025-10-12 11:19:34] 2025-10-12 15:19:02,787 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:19:34] 2025-10-12 15:19:02,788 | INFO     | ***************************************
[2025-10-12 11:19:34] 2025-10-12 15:19:02,788 | INFO     | 
[2025-10-12 11:19:34] 2025-10-12 15:19:02,788 | INFO     | architecture information:
[2025-10-12 11:19:34] 2025-10-12 15:19:02,789 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:19:34] 2025-10-12 15:19:02,802 | INFO     | cat /etc/os-release:
[2025-10-12 11:19:34] NAME="CentOS Linux"
[2025-10-12 11:19:34] VERSION="7 (Core)"
[2025-10-12 11:19:34] ID="centos"
[2025-10-12 11:19:34] ID_LIKE="rhel fedora"
[2025-10-12 11:19:34] VERSION_ID="7"
[2025-10-12 11:19:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:19:34] ANSI_COLOR="0;31"
[2025-10-12 11:19:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:19:34] HOME_URL="https://www.centos.org/"
[2025-10-12 11:19:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:19:34] 
[2025-10-12 11:19:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:19:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:19:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:19:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:19:34] 
[2025-10-12 11:19:34] 2025-10-12 15:19:02,802 | INFO     | ***************************************
[2025-10-12 11:19:34] 2025-10-12 15:19:03,305 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:19:34] 2025-10-12 15:19:03,321 | INFO     | sufficient remaining disk space (29369565184 B)
[2025-10-12 11:19:34] 2025-10-12 15:19:03,321 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:19:34] 2025-10-12 15:19:03,321 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:19:34] 2025-10-12 15:19:03,321 | INFO     | update_server=False
[2025-10-12 11:19:34] 2025-10-12 15:19:03,322 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:19:34] 2025-10-12 15:19:03,322 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:19:34] 2025-10-12 15:19:03,322 | INFO     | aborting loop
[2025-10-12 11:19:34] 2025-10-12 15:19:04,174 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:19:34] 2025-10-12 15:19:04,286 | INFO     | all payload control threads have been joined
[2025-10-12 11:19:34] 2025-10-12 15:19:04,325 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:04,328 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:04,328 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:04,345 | INFO     | all data control threads have been joined
[2025-10-12 11:19:34] 2025-10-12 15:19:04,762 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:04,811 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:04,843 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:04,993 | INFO     | all job control threads have been joined
[2025-10-12 11:19:34] 2025-10-12 15:19:05,225 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:05,249 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:05,292 | INFO     | [payload] control thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:05,351 | INFO     | [data] control thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:05,723 | INFO     | [job] validate thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:05,998 | INFO     | [job] control thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:06,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:19:34] 2025-10-12 15:19:06,180 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:06,755 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:19:34] 2025-10-12 15:19:07,134 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:08,190 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:19:34] 2025-10-12 15:19:10,760 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:14,000 | INFO     | job.realtimelogging is not enabled
[2025-10-12 11:19:34] 2025-10-12 15:19:15,006 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:19:34] 2025-10-12 15:19:15,567 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140011163989824)>', '<ExcThread(monitor, started 140010288310016)>']
[2025-10-12 11:19:34] 2025-10-12 15:19:20,592 | INFO     | all workflow threads have been joined
[2025-10-12 11:19:34] 2025-10-12 15:19:20,593 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:19:34] 2025-10-12 15:19:20,593 | INFO     | traces error code: 0
[2025-10-12 11:19:34] 2025-10-12 15:19:20,593 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:19:34] 2025-10-12 15:19:34,110 | INFO     | PID=31723 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 11:19:34] 2025-10-12 15:19:34,110 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:19:34] 2025-10-12 15:19:34,110 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:19:34] 2025-10-12 15:19:34,110 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:19:34] 2025-10-12 15:19:34,110 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:19:34] 2025-10-12 15:19:34,111 | INFO     | [monitor] control thread has ended
[2025-10-12 11:19:34] 2025-10-12 15:19:34,197 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:19:34] 2025-10-12 15:19:34,201 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:19:34] 2025-10-12 15:19:34,204 [wrapper] pilotpid: 31723
[2025-10-12 11:19:34] 2025-10-12 15:19:34,208 [wrapper] Pilot exit status: 0
[2025-10-12 11:19:34] 2025-10-12 15:19:34,224 [wrapper] pandaids: 6839988349
[2025-10-12 11:19:34] 2025-10-12 15:19:34,264 [wrapper] cleanup supervisor_pilot 20728 31724
[2025-10-12 11:19:34] 2025-10-12 15:19:34,267 [wrapper] Test setup, not cleaning
[2025-10-12 11:19:34] 2025-10-12 15:19:34,271 [wrapper] apfmon messages muted
[2025-10-12 11:19:34] 2025-10-12 15:19:34,275 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:19:34] 2025-10-12 15:19:34,279 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:19:34]  *** Error codes and diagnostics ***
[2025-10-12 11:19:34]     "exeErrorCode": 0,
[2025-10-12 11:19:34]     "exeErrorDiag": "",
[2025-10-12 11:19:34]     "pilotErrorCode": 0,
[2025-10-12 11:19:34]     "pilotErrorDiag": "",
[2025-10-12 11:19:34]  *** Listing of results directory ***
[2025-10-12 11:19:34] total 406272
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:43 queuedata.json
[2025-10-12 11:19:34] -rwx------ 1 boincer umatlas     36292 Oct 12 08:44 runpilot2-wrapper.sh
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:19:34] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:06 run_atlas
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:06 job.xml
[2025-10-12 11:19:34] -rw-r--r-- 2 boincer umatlas 220427084 Oct 12 10:06 EVNT.46676267._003806.pool.root.1
[2025-10-12 11:19:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:06 start_atlas.sh
[2025-10-12 11:19:34] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:06 shared
[2025-10-12 11:19:34] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 10:06 input.tar.gz
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:06 boinc_lockfile
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 10:06 pandaJob.out
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas    975528 Oct 12 10:06 agis_schedconf.cvmfs.json
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas   1560580 Oct 12 10:07 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:19:34] drwx------ 5 boincer umatlas      4096 Oct 12 10:07 pilot3
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 11:10 init_data.xml
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas 189681291 Oct 12 11:18 HITS.46676269._078442.pool.root.1
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas       529 Oct 12 11:18 boinc_task_state.xml
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas      1050 Oct 12 11:18 memory_monitor_summary.json
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas    381422 Oct 12 11:18 log.46676269._078442.job.log.tgz.1
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas        95 Oct 12 11:18 pilot_heartbeat.json
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas      7847 Oct 12 11:19 heartbeat.json
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 11:19 boinc_mmap_file
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas        27 Oct 12 11:19 wrapper_checkpoint.txt
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas       745 Oct 12 11:19 pilotlog.txt
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas    627913 Oct 12 11:19 log.46676269._078442.job.log.1
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas       357 Oct 12 11:19 output.list
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas       620 Oct 12 11:19 runtime_log
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas   1024000 Oct 12 11:19 result.tar.gz
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 11:19 runtime_log.err
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas       659 Oct 12 11:19 kmWMDmDcAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzpjNDmuFFDgm.diag
[2025-10-12 11:19:34] -rw-r--r-- 1 boincer umatlas     21723 Oct 12 11:19 stderr.txt
[2025-10-12 11:19:34] HITS file was successfully produced:
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas 189681291 Oct 12 11:18 shared/HITS.pool.root.1
[2025-10-12 11:19:34]  *** Contents of shared directory: ***
[2025-10-12 11:19:34] total 402080
[2025-10-12 11:19:34] -rw-r--r-- 2 boincer umatlas 220427084 Oct 12 10:06 ATLAS.root_0
[2025-10-12 11:19:34] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:06 start_atlas.sh
[2025-10-12 11:19:34] -rw-r--r-- 2 boincer umatlas    569682 Oct 12 10:06 input.tar.gz
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas 189681291 Oct 12 11:18 HITS.pool.root.1
[2025-10-12 11:19:34] -rw------- 1 boincer umatlas   1024000 Oct 12 11:19 result.tar.gz
11:19:36 (28030): run_atlas exited; CPU time 46136.336520
11:19:36 (28030): called boinc_finish(0)

</stderr_txt>
]]>

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