Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:14:42 (8054): wrapper (7.7.26015): starting
10:14:42 (8054): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 10:14:42] Arguments: --nthreads 12
[2025-10-12 10:14:42] Threads: 12
[2025-10-12 10:14:42] Checking for CVMFS
[2025-10-12 10:14:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:14:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:14:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:14:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:14:42] 2.11.2.0 2947 222942 98228 151623 2 56 14713585 20275201 1 130560 1 108747652 99.984 13296562 11218 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:14:42] CVMFS is ok
[2025-10-12 10:14:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:14:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:14:42] Further information can be found at the LHC@home message board.
[2025-10-12 10:14:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:14:42] Checking for apptainer binary...
[2025-10-12 10:14:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:14:42] Running /usr/bin/apptainer --version
[2025-10-12 10:14:42] apptainer version 1.3.2-1.el7
[2025-10-12 10:14:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:14:44] c-205-18.aglt2.org
[2025-10-12 10:14:44] apptainer works
[2025-10-12 10:14:44] Set ATHENA_PROC_NUMBER=12
[2025-10-12 10:14:44] Set ATHENA_CORE_NUMBER=12
[2025-10-12 10:14:44] Starting ATLAS job with PandaID=6839637030
[2025-10-12 10:14:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:28:15]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:28:15]  mtime=0
[2025-10-12 11:28:15]  protocol_id=None
[2025-10-12 11:28:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 11:28:15]  replicas=None
[2025-10-12 11:28:15]  scope=mc23_13p6TeV
[2025-10-12 11:28:15]  status=None
[2025-10-12 11:28:15]  status_code=0
[2025-10-12 11:28:15]  storage_token=
[2025-10-12 11:28:15]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839637030/log.46676269._073288.job.log.tgz.1
[2025-10-12 11:28:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/15/log.46676269._073288.job.log.tgz.1
[2025-10-12 11:28:15]  workdir=None
[2025-10-12 11:28:15] ]
[2025-10-12 11:28:15] 2025-10-12 15:27:36,041 | INFO     | transferring file log.46676269._073288.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839637030/log.46676269._073288.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 11:28:15] 2025-10-12 15:27:36,042 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839637030/log.46676269._073288.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._073288.job
[2025-10-12 11:28:15] 2025-10-12 15:27:36,064 | INFO     | adding to output.list: log.46676269._073288.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/47/15/log.46676269._073288.job.log.tg
[2025-10-12 11:28:15] 2025-10-12 15:27:36,065 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 11:28:15] 2025-10-12 15:27:36,066 | INFO     | summary of transferred files:
[2025-10-12 11:28:15] 2025-10-12 15:27:36,066 | INFO     |  -- lfn=log.46676269._073288.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 11:28:15] 2025-10-12 15:27:36,066 | INFO     | stage-out finished correctly
[2025-10-12 11:28:15] 2025-10-12 15:27:36,164 | INFO     | time since job start (4357s) is within the limit (172800.0s)
[2025-10-12 11:28:15] 2025-10-12 15:27:38,170 | INFO     | time since job start (4359s) is within the limit (172800.0s)
[2025-10-12 11:28:15] 2025-10-12 15:27:38,437 | INFO     | monitor loop #327: job 0:6839637030 is in state 'finished'
[2025-10-12 11:28:15] 2025-10-12 15:27:38,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:28:15] 2025-10-12 15:27:38,539 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:28:15] 2025-10-12 15:27:38,621 | INFO     | job 6839637030 has state=finished
[2025-10-12 11:28:15] 2025-10-12 15:27:38,621 | INFO     | preparing for final server update for job 6839637030 in state='finished'
[2025-10-12 11:28:15] 2025-10-12 15:27:38,622 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:28:15] 2025-10-12 15:27:38,622 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:28:15] 2025-10-12 15:27:38,622 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:28:15] 2025-10-12 15:27:38,622 | INFO     | job 6839637030 has finished - writing final server update
[2025-10-12 11:28:15] 2025-10-12 15:27:38,623 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:28:15] 2025-10-12 15:27:38,624 | INFO     | executing command: lscpu
[2025-10-12 11:28:15] 2025-10-12 15:27:38,651 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:28:15] 2025-10-12 15:27:40,175 | INFO     | time since job start (4361s) is within the limit (172800.0s)
[2025-10-12 11:28:15] 2025-10-12 15:27:40,948 | INFO     | monitor loop #328: job 0:6839637030 is in state 'finished'
[2025-10-12 11:28:15] 2025-10-12 15:27:40,948 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:28:15] 2025-10-12 15:27:42,181 | INFO     | time since job start (4363s) is within the limit (172800.0s)
[2025-10-12 11:28:15] 2025-10-12 15:27:43,419 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 11:28:15] 2025-10-12 15:27:43,423 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-10-12 11:28:15] 2025-10-12 15:27:43,426 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839637030/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:28:15] 2025-10-12 15:27:43,427 | INFO     | extracted standard info from prmon json
[2025-10-12 11:28:15] 2025-10-12 15:27:43,427 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:28:15] 2025-10-12 15:27:43,427 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:28:15] 2025-10-12 15:27:43,427 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:28:15] 2025-10-12 15:27:43,427 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:28:15] 2025-10-12 15:27:43,429 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:28:15] 2025-10-12 15:27:43,430 | INFO     | sum of square deviations: 81266640.0
[2025-10-12 11:28:15] 2025-10-12 15:27:43,430 | INFO     | sum of deviations: -2926309568.0
[2025-10-12 11:28:15] 2025-10-12 15:27:43,430 | INFO     | mean x: 1760280755.5
[2025-10-12 11:28:15] 2025-10-12 15:27:43,430 | INFO     | mean y: 2929479.375
[2025-10-12 11:28:15] 2025-10-12 15:27:43,430 | INFO     | -- intersect: 63388427110.20997
[2025-10-12 11:28:15] 2025-10-12 15:27:43,430 | INFO     | intersect: 63388427110.20997
[2025-10-12 11:28:15] 2025-10-12 15:27:43,431 | INFO     | chi2: 0.059839612976265916
[2025-10-12 11:28:15] 2025-10-12 15:27:43,431 | INFO     | -- intersect: 63388427110.20997
[2025-10-12 11:28:15] 2025-10-12 15:27:43,431 | INFO     | current memory leak: -36.01 B/s (using 64 data points, chi2=0.06)
[2025-10-12 11:28:15] 2025-10-12 15:27:43,431 | INFO     | could have reported an average CPU frequency of 2032 MHz (6 samples)
[2025-10-12 11:28:15] 2025-10-12 15:27:43,431 | INFO     | ..............................
[2025-10-12 11:28:15] 2025-10-12 15:27:43,431 | INFO     | . Timing measurements:
[2025-10-12 11:28:15] 2025-10-12 15:27:43,432 | INFO     | . get job = 0 s
[2025-10-12 11:28:15] 2025-10-12 15:27:43,432 | INFO     | . initial setup = 2 s
[2025-10-12 11:28:15] 2025-10-12 15:27:43,432 | INFO     | . payload setup = 7 s
[2025-10-12 11:28:15] 2025-10-12 15:27:43,432 | INFO     | . stage-in = 0 s
[2025-10-12 11:28:15] 2025-10-12 15:27:43,432 | INFO     | . payload execution = 4328 s
[2025-10-12 11:28:15] 2025-10-12 15:27:43,432 | INFO     | . stage-out = 0 s
[2025-10-12 11:28:15] 2025-10-12 15:27:43,432 | INFO     | . log creation = 0 s
[2025-10-12 11:28:15] 2025-10-12 15:27:43,432 | INFO     | ..............................
[2025-10-12 11:28:15] 2025-10-12 15:27:43,515 | INFO     | 
[2025-10-12 11:28:15] 2025-10-12 15:27:43,515 | INFO     | job summary report
[2025-10-12 11:28:15] 2025-10-12 15:27:43,525 | INFO     | --------------------------------------------------
[2025-10-12 11:28:15] 2025-10-12 15:27:43,525 | INFO     | PanDA job id: 6839637030
[2025-10-12 11:28:15] 2025-10-12 15:27:43,525 | INFO     | task id: 46676269
[2025-10-12 11:28:15] 2025-10-12 15:27:43,525 | INFO     | errors: (none)
[2025-10-12 11:28:15] 2025-10-12 15:27:43,525 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:28:15] 2025-10-12 15:27:43,526 | INFO     | pilot state: finished 
[2025-10-12 11:28:15] 2025-10-12 15:27:43,526 | INFO     | transexitcode: 0
[2025-10-12 11:28:15] 2025-10-12 15:27:43,526 | INFO     | exeerrorcode: 0
[2025-10-12 11:28:15] 2025-10-12 15:27:43,526 | INFO     | exeerrordiag: 
[2025-10-12 11:28:15] 2025-10-12 15:27:43,526 | INFO     | exitcode: 0
[2025-10-12 11:28:15] 2025-10-12 15:27:43,526 | INFO     | exitmsg: OK
[2025-10-12 11:28:15] 2025-10-12 15:27:43,526 | INFO     | cpuconsumptiontime: 47223 s
[2025-10-12 11:28:15] 2025-10-12 15:27:43,527 | INFO     | nevents: 400
[2025-10-12 11:28:15] 2025-10-12 15:27:43,527 | INFO     | neventsw: 0
[2025-10-12 11:28:15] 2025-10-12 15:27:43,527 | INFO     | pid: 18227
[2025-10-12 11:28:15] 2025-10-12 15:27:43,527 | INFO     | pgrp: 18227
[2025-10-12 11:28:15] 2025-10-12 15:27:43,527 | INFO     | corecount: 12
[2025-10-12 11:28:15] 2025-10-12 15:27:43,527 | INFO     | event service: False
[2025-10-12 11:28:15] 2025-10-12 15:27:43,527 | INFO     | sizes: {0: 2348857, 1: 2348857, 5: 2349147, 11: 2349203, 4339: 2375252, 4340: 2384250, 4343: 2384434, 4348: 2384628}
[2025-10-12 11:28:15] 2025-10-12 15:27:43,528 | INFO     | --------------------------------------------------
[2025-10-12 11:28:15] 2025-10-12 15:27:43,528 | INFO     | 
[2025-10-12 11:28:15] 2025-10-12 15:27:43,528 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 11:28:15] 2025-10-12 15:27:43,552 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,552 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,552 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,553 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,553 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,554 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,554 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,554 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,554 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,554 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,555 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,555 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:28:15] 2025-10-12 15:27:43,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,555 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:28:15] 2025-10-12 15:27:43,556 | INFO     | job 6839637030 has completed (purged errors)
[2025-10-12 11:28:15] 2025-10-12 15:27:43,556 | INFO     | overall cleanup function is called
[2025-10-12 11:28:15] 2025-10-12 15:27:44,564 | INFO     | --- collectZombieJob: --- 10, [18227]
[2025-10-12 11:28:15] 2025-10-12 15:27:44,564 | INFO     | zombie collector waiting for pid 18227
[2025-10-12 11:28:15] 2025-10-12 15:27:44,564 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:28:15] 2025-10-12 15:27:44,564 | INFO     | collected zombie processes
[2025-10-12 11:28:15] 2025-10-12 15:27:44,565 | INFO     | will attempt to kill all subprocesses of pid=18227
[2025-10-12 11:28:15] 2025-10-12 15:27:44,656 | INFO     | process IDs to be killed: [18227] (in reverse order)
[2025-10-12 11:28:15] 2025-10-12 15:27:44,711 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:28:15] 2025-10-12 15:27:44,711 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:28:15] 2025-10-12 15:27:44,715 | INFO     | did not find any defunct processes belonging to 18227
[2025-10-12 11:28:15] 2025-10-12 15:27:44,718 | INFO     | did not find any defunct processes belonging to 18227
[2025-10-12 11:28:15] 2025-10-12 15:27:44,719 | INFO     | ready for new job
[2025-10-12 11:28:15] 2025-10-12 15:27:44,719 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:28:15] 2025-10-12 15:27:44,720 | INFO     | ***************************************
[2025-10-12 11:28:15] 2025-10-12 15:27:44,720 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:28:15] 2025-10-12 15:27:44,720 | INFO     | ***************************************
[2025-10-12 11:28:15] 2025-10-12 15:27:44,720 | INFO     | 
[2025-10-12 11:28:15] 2025-10-12 15:27:44,721 | INFO     | architecture information:
[2025-10-12 11:28:15] 2025-10-12 15:27:44,721 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:28:15] 2025-10-12 15:27:44,737 | INFO     | cat /etc/os-release:
[2025-10-12 11:28:15] NAME="CentOS Linux"
[2025-10-12 11:28:15] VERSION="7 (Core)"
[2025-10-12 11:28:15] ID="centos"
[2025-10-12 11:28:15] ID_LIKE="rhel fedora"
[2025-10-12 11:28:15] VERSION_ID="7"
[2025-10-12 11:28:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:28:15] ANSI_COLOR="0;31"
[2025-10-12 11:28:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:28:15] HOME_URL="https://www.centos.org/"
[2025-10-12 11:28:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:28:15] 
[2025-10-12 11:28:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:28:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:28:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:28:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:28:15] 
[2025-10-12 11:28:15] 2025-10-12 15:27:44,737 | INFO     | ***************************************
[2025-10-12 11:28:15] 2025-10-12 15:27:45,239 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:28:15] 2025-10-12 15:27:45,256 | INFO     | sufficient remaining disk space (29360128000 B)
[2025-10-12 11:28:15] 2025-10-12 15:27:45,256 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:28:15] 2025-10-12 15:27:45,256 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:28:15] 2025-10-12 15:27:45,257 | INFO     | update_server=False
[2025-10-12 11:28:15] 2025-10-12 15:27:45,257 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:28:15] 2025-10-12 15:27:45,257 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:28:15] 2025-10-12 15:27:45,257 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:28:15] 2025-10-12 15:27:45,258 | INFO     | aborting loop
[2025-10-12 11:28:15] 2025-10-12 15:27:45,258 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:28:15] 2025-10-12 15:27:45,886 | INFO     | all payload control threads have been joined
[2025-10-12 11:28:15] 2025-10-12 15:27:45,895 | INFO     | all data control threads have been joined
[2025-10-12 11:28:15] 2025-10-12 15:27:45,897 | INFO     | all job control threads have been joined
[2025-10-12 11:28:15] 2025-10-12 15:27:46,259 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:46,262 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:46,262 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:46,459 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:46,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:28:15] 2025-10-12 15:27:46,694 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:46,740 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:46,892 | INFO     | [payload] control thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:46,900 | INFO     | [data] control thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:46,902 | INFO     | [job] control thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:47,000 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:47,297 | INFO     | [job] validate thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:47,522 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:47,619 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:47,720 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:48,662 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:27:49,263 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:28:15] 2025-10-12 15:28:06,117 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:28:15] 2025-10-12 15:28:07,898 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796133009216)>', '<ExcThread(monitor, started 139795481229056)>']
[2025-10-12 11:28:15] 2025-10-12 15:28:12,925 | INFO     | all workflow threads have been joined
[2025-10-12 11:28:15] 2025-10-12 15:28:12,926 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:28:15] 2025-10-12 15:28:12,927 | INFO     | traces error code: 0
[2025-10-12 11:28:15] 2025-10-12 15:28:12,927 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:28:15] 2025-10-12 15:28:15,387 | INFO     | PID=11724 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 11:28:15] 2025-10-12 15:28:15,388 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:28:15] 2025-10-12 15:28:15,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:28:15] 2025-10-12 15:28:15,388 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:28:15] 2025-10-12 15:28:15,388 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:28:15] 2025-10-12 15:28:15,388 | INFO     | [monitor] control thread has ended
[2025-10-12 11:28:15] 2025-10-12 15:28:15,488 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:28:15] 2025-10-12 15:28:15,492 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:28:15] 2025-10-12 15:28:15,496 [wrapper] pilotpid: 11724
[2025-10-12 11:28:15] 2025-10-12 15:28:15,500 [wrapper] Pilot exit status: 0
[2025-10-12 11:28:15] 2025-10-12 15:28:15,515 [wrapper] pandaids: 6839637030
[2025-10-12 11:28:15] 2025-10-12 15:28:15,556 [wrapper] cleanup supervisor_pilot 22689 11725
[2025-10-12 11:28:15] 2025-10-12 15:28:15,560 [wrapper] Test setup, not cleaning
[2025-10-12 11:28:15] 2025-10-12 15:28:15,564 [wrapper] apfmon messages muted
[2025-10-12 11:28:15] 2025-10-12 15:28:15,568 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:28:15] 2025-10-12 15:28:15,572 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:28:15]  *** Error codes and diagnostics ***
[2025-10-12 11:28:15]     "exeErrorCode": 0,
[2025-10-12 11:28:15]     "exeErrorDiag": "",
[2025-10-12 11:28:15]     "pilotErrorCode": 0,
[2025-10-12 11:28:15]     "pilotErrorDiag": "",
[2025-10-12 11:28:15]  *** Listing of results directory ***
[2025-10-12 11:28:15] total 414420
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 11:28:15] -rwx------ 1 boincer umatlas     36292 Oct 12 03:00 runpilot2-wrapper.sh
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 03:00 queuedata.json
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:28:15] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:14 run_atlas
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:14 job.xml
[2025-10-12 11:28:15] -rw-r--r-- 2 boincer umatlas 222410551 Oct 12 10:14 EVNT.46676267._003491.pool.root.1
[2025-10-12 11:28:15] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:14 start_atlas.sh
[2025-10-12 11:28:15] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:14 shared
[2025-10-12 11:28:15] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 10:14 input.tar.gz
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:14 boinc_lockfile
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 10:14 pandaJob.out
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas    975528 Oct 12 10:14 agis_schedconf.cvmfs.json
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas   1560580 Oct 12 10:14 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:28:15] drwx------ 5 boincer umatlas      4096 Oct 12 10:14 pilot3
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 11:21 init_data.xml
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas 196007200 Oct 12 11:27 HITS.46676269._073288.pool.root.1
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas       530 Oct 12 11:27 boinc_task_state.xml
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas      1049 Oct 12 11:27 memory_monitor_summary.json
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas    385969 Oct 12 11:27 log.46676269._073288.job.log.tgz.1
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas      7853 Oct 12 11:27 heartbeat.json
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 11:27 boinc_mmap_file
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas        27 Oct 12 11:27 wrapper_checkpoint.txt
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas       745 Oct 12 11:28 pilotlog.txt
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas        95 Oct 12 11:28 pilot_heartbeat.json
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas    635596 Oct 12 11:28 log.46676269._073288.job.log.1
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas       357 Oct 12 11:28 output.list
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas       620 Oct 12 11:28 runtime_log
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas   1044480 Oct 12 11:28 result.tar.gz
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 11:28 runtime_log.err
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas       659 Oct 12 11:28 AJ1LDmnF5R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFyiNDme9RORo.diag
[2025-10-12 11:28:15] -rw-r--r-- 1 boincer umatlas     21689 Oct 12 11:28 stderr.txt
[2025-10-12 11:28:15] HITS file was successfully produced:
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas 196007200 Oct 12 11:27 shared/HITS.pool.root.1
[2025-10-12 11:28:15]  *** Contents of shared directory: ***
[2025-10-12 11:28:15] total 410216
[2025-10-12 11:28:15] -rw-r--r-- 2 boincer umatlas 222410551 Oct 12 10:14 ATLAS.root_0
[2025-10-12 11:28:15] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:14 start_atlas.sh
[2025-10-12 11:28:15] -rw-r--r-- 2 boincer umatlas    569676 Oct 12 10:14 input.tar.gz
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas 196007200 Oct 12 11:27 HITS.pool.root.1
[2025-10-12 11:28:15] -rw------- 1 boincer umatlas   1044480 Oct 12 11:28 result.tar.gz
11:28:16 (8054): run_atlas exited; CPU time 47196.439934
11:28:16 (8054): called boinc_finish(0)

</stderr_txt>
]]>

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