Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:51:21 (2261754): wrapper (7.7.26015): starting
00:51:21 (2261754): wrapper: running run_atlas (--nthreads 4)
[2025-10-14 00:51:21] Arguments: --nthreads 4
[2025-10-14 00:51:21] Threads: 4
[2025-10-14 00:51:21] Checking for CVMFS
[2025-10-14 00:51:21] No cvmfs_config command found, will try listing directly
[2025-10-14 00:51:21] CVMFS is ok
[2025-10-14 00:51:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-14 00:51:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-14 00:51:21] Further information can be found at the LHC@home message board.
[2025-10-14 00:51:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-14 00:51:21] Checking for apptainer binary...
[2025-10-14 00:51:21] which: no apptainer in ((null))
[2025-10-14 00:51:21] apptainer is not installed, using version from CVMFS
[2025-10-14 00:51:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-14 00:51:21] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot108/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2025-10-14 00:51:21] apptainer works
[2025-10-14 00:51:21] Set ATHENA_PROC_NUMBER=4
[2025-10-14 00:51:21] Set ATHENA_CORE_NUMBER=4
[2025-10-14 00:51:21] Starting ATLAS job with PandaID=6839660066
[2025-10-14 00:51:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot108/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-14 03:48:01]  *** The last 200 lines of the pilot log: ***
[2025-10-14 03:48:01] 2025-10-14 01:43:09,485 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-14 03:48:01] 2025-10-14 01:43:09,504 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 2707.2755937499987
[2025-10-14 03:48:01] 2025-10-14 01:43:09,528 | INFO     | using path: /scratch/boinc/var/slot108/slots/0/PanDA_Pilot-6839660066/memory_monitor_summary.json (trf name=prmon)
[2025-10-14 03:48:01] 2025-10-14 01:43:09,528 | INFO     | extracted standard info from prmon json
[2025-10-14 03:48:01] 2025-10-14 01:43:09,529 | INFO     | extracted standard memory fields from prmon json
[2025-10-14 03:48:01] 2025-10-14 01:43:09,529 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-14 03:48:01] 2025-10-14 01:43:09,529 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-14 03:48:01] 2025-10-14 01:43:09,529 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-14 03:48:01] 2025-10-14 01:43:09,532 | INFO     | fitting pss+swap vs Time
[2025-10-14 03:48:01] 2025-10-14 01:43:09,533 | INFO     | sum of square deviations: 1470248962.0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,534 | INFO     | sum of deviations: 21023666408.999996
[2025-10-14 03:48:01] 2025-10-14 01:43:09,534 | INFO     | mean x: 1760401023.5
[2025-10-14 03:48:01] 2025-10-14 01:43:09,534 | INFO     | mean y: 2309669.369047619
[2025-10-14 03:48:01] 2025-10-14 01:43:09,534 | INFO     | -- intersect: -25170354838.94717
[2025-10-14 03:48:01] 2025-10-14 01:43:09,534 | INFO     | intersect: -25170354838.94717
[2025-10-14 03:48:01] 2025-10-14 01:43:09,534 | INFO     | chi2: 1.218532456915809
[2025-10-14 03:48:01] 2025-10-14 01:43:09,535 | INFO     | sum of square deviations: 1342841922.0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,536 | INFO     | sum of deviations: 20020960425.999996
[2025-10-14 03:48:01] 2025-10-14 01:43:09,536 | INFO     | mean x: 1760400871.0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,536 | INFO     | mean y: 2308469.993865031
[2025-10-14 03:48:01] 2025-10-14 01:43:09,536 | INFO     | -- intersect: -26244203196.616825
[2025-10-14 03:48:01] 2025-10-14 01:43:09,536 | INFO     | intersect: -26244203196.616825
[2025-10-14 03:48:01] 2025-10-14 01:43:09,536 | INFO     | chi2: 1.219472478514368
[2025-10-14 03:48:01] 2025-10-14 01:43:09,536 | INFO     | current chi2=1.219472478514368 (change=-0.07714374723660335 %)
[2025-10-14 03:48:01] 2025-10-14 01:43:09,536 | INFO     | right removable region: 162
[2025-10-14 03:48:01] 2025-10-14 01:43:09,537 | INFO     | sum of square deviations: 1342841922.0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,538 | INFO     | sum of deviations: 1434631977.0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,538 | INFO     | mean x: 1760401176.0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,538 | INFO     | mean y: 2332733.975460123
[2025-10-14 03:48:01] 2025-10-14 01:43:09,538 | INFO     | -- intersect: -1878400789.503266
[2025-10-14 03:48:01] 2025-10-14 01:43:09,538 | INFO     | intersect: -1878400789.503266
[2025-10-14 03:48:01] 2025-10-14 01:43:09,538 | INFO     | chi2: 0.001896496079318952
[2025-10-14 03:48:01] 2025-10-14 01:43:09,538 | INFO     | current chi2=0.001896496079318952 (change=99.84436228443853 %)
[2025-10-14 03:48:01] 2025-10-14 01:43:09,538 | INFO     | sum of square deviations: 1223016419.5
[2025-10-14 03:48:01] 2025-10-14 01:43:09,539 | INFO     | sum of deviations: 1028096257.0000001
[2025-10-14 03:48:01] 2025-10-14 01:43:09,539 | INFO     | mean x: 1760401328.5
[2025-10-14 03:48:01] 2025-10-14 01:43:09,540 | INFO     | mean y: 2333248.1772151897
[2025-10-14 03:48:01] 2025-10-14 01:43:09,540 | INFO     | -- intersect: -1477501354.0340903
[2025-10-14 03:48:01] 2025-10-14 01:43:09,540 | INFO     | intersect: -1477501354.0340903
[2025-10-14 03:48:01] 2025-10-14 01:43:09,540 | INFO     | chi2: 0.0017275514028334254
[2025-10-14 03:48:01] 2025-10-14 01:43:09,540 | INFO     | current chi2=0.0017275514028334254 (change=8.908253400987574 %)
[2025-10-14 03:48:01] 2025-10-14 01:43:09,540 | INFO     | left removable region: 20
[2025-10-14 03:48:01] 2025-10-14 01:43:09,540 | INFO     | sum of square deviations: 887813855.5
[2025-10-14 03:48:01] 2025-10-14 01:43:09,541 | INFO     | sum of deviations: 1011269834.0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,541 | INFO     | mean x: 1760401450.5
[2025-10-14 03:48:01] 2025-10-14 01:43:09,541 | INFO     | mean y: 2332007.6619718308
[2025-10-14 03:48:01] 2025-10-14 01:43:09,542 | INFO     | -- intersect: -2002864094.6424873
[2025-10-14 03:48:01] 2025-10-14 01:43:09,542 | INFO     | intersect: -2002864094.6424873
[2025-10-14 03:48:01] 2025-10-14 01:43:09,542 | INFO     | chi2: 0.0011891269209947334
[2025-10-14 03:48:01] 2025-10-14 01:43:09,542 | INFO     | -- intersect: -2002864094.6424873
[2025-10-14 03:48:01] 2025-10-14 01:43:09,542 | INFO     | current memory leak: 1.14 B/s (using 142 data points, chi2=0.00)
[2025-10-14 03:48:01] 2025-10-14 01:43:09,542 | INFO     | could have reported an average CPU frequency of 2706 MHz (9 samples)
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | ..............................
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | . Timing measurements:
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | . get job = 0 s
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | . initial setup = 1 s
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | . payload setup = 9 s
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | . stage-in = 0 s
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | . payload execution = 10252 s
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | . stage-out = 0 s
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | . log creation = 0 s
[2025-10-14 03:48:01] 2025-10-14 01:43:09,543 | INFO     | ..............................
[2025-10-14 03:48:01] 2025-10-14 01:43:09,638 | INFO     | 
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | job summary report
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | --------------------------------------------------
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | PanDA job id: 6839660066
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | task id: 46676269
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | errors: (none)
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | pilot state: finished 
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | transexitcode: 0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | exeerrorcode: 0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,639 | INFO     | exeerrordiag: 
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | exitcode: 0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | exitmsg: OK
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | cpuconsumptiontime: 39310 s
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | nevents: 400
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | neventsw: 0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | pid: 2411265
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | pgrp: 2411265
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | corecount: 4
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | event service: False
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | sizes: {0: 2348869, 1: 2348869, 7: 2349159, 11: 2349187, 10265: 2378323, 10267: 2387529, 10276: 2387759}
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | --------------------------------------------------
[2025-10-14 03:48:01] 2025-10-14 01:43:09,640 | INFO     | 
[2025-10-14 03:48:01] 2025-10-14 01:43:09,641 | INFO     | executing command: ls -lF /scratch/boinc/var/slot108/slots/0
[2025-10-14 03:48:01] 2025-10-14 01:43:09,673 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,673 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,673 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,673 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,673 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,674 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,674 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,674 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,674 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,674 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,674 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,674 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,674 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,678 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,678 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,678 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,678 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,678 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-14 03:48:01] 2025-10-14 01:43:09,678 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,678 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-14 03:48:01] 2025-10-14 01:43:09,679 | INFO     | job 6839660066 has completed (purged errors)
[2025-10-14 03:48:01] 2025-10-14 01:43:09,679 | INFO     | overall cleanup function is called
[2025-10-14 03:48:01] 2025-10-14 01:43:10,688 | INFO     | --- collectZombieJob: --- 10, [2411265]
[2025-10-14 03:48:01] 2025-10-14 01:43:10,689 | INFO     | zombie collector waiting for pid 2411265
[2025-10-14 03:48:01] 2025-10-14 01:43:10,689 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-14 03:48:01] 2025-10-14 01:43:10,689 | INFO     | collected zombie processes
[2025-10-14 03:48:01] 2025-10-14 01:43:10,689 | INFO     | will attempt to kill all subprocesses of pid=2411265
[2025-10-14 03:48:01] 2025-10-14 01:43:11,748 | INFO     | PID=2298769 has CPU usage=24.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-14 03:48:01] 2025-10-14 01:43:11,749 | INFO     | .. there are 7 such processes running
[2025-10-14 03:48:01] 2025-10-14 01:43:12,080 | INFO     | process IDs to be killed: [2411265] (in reverse order)
[2025-10-14 03:48:01] 2025-10-14 01:43:12,317 | WARNING  | found no corresponding commands to process id(s)
[2025-10-14 03:48:01] 2025-10-14 01:43:12,317 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-14 03:48:01] 2025-10-14 01:43:12,346 | INFO     | did not find any defunct processes belonging to 2411265
[2025-10-14 03:48:01] 2025-10-14 01:43:12,371 | INFO     | did not find any defunct processes belonging to 2411265
[2025-10-14 03:48:01] 2025-10-14 01:43:12,371 | INFO     | ready for new job
[2025-10-14 03:48:01] 2025-10-14 01:43:12,372 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-14 03:48:01] 2025-10-14 01:43:12,374 | INFO     | ***************************************
[2025-10-14 03:48:01] 2025-10-14 01:43:12,374 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-14 03:48:01] 2025-10-14 01:43:12,374 | INFO     | ***************************************
[2025-10-14 03:48:01] 2025-10-14 01:43:12,374 | INFO     | 
[2025-10-14 03:48:01] 2025-10-14 01:43:12,382 | INFO     | architecture information:
[2025-10-14 03:48:01] 2025-10-14 01:43:12,382 | INFO     | executing command: cat /etc/os-release
[2025-10-14 03:48:01] 2025-10-14 01:43:12,407 | INFO     | cat /etc/os-release:
[2025-10-14 03:48:01] NAME="CentOS Linux"
[2025-10-14 03:48:01] VERSION="7 (Core)"
[2025-10-14 03:48:01] ID="centos"
[2025-10-14 03:48:01] ID_LIKE="rhel fedora"
[2025-10-14 03:48:01] VERSION_ID="7"
[2025-10-14 03:48:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-14 03:48:01] ANSI_COLOR="0;31"
[2025-10-14 03:48:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-14 03:48:01] HOME_URL="https://www.centos.org/"
[2025-10-14 03:48:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-14 03:48:01] 
[2025-10-14 03:48:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-14 03:48:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-14 03:48:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-14 03:48:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-14 03:48:01] 
[2025-10-14 03:48:01] 2025-10-14 01:43:12,407 | INFO     | ***************************************
[2025-10-14 03:48:01] 2025-10-14 01:43:12,910 | INFO     | executing command: df -mP /scratch/boinc/var/slot108/slots/0
[2025-10-14 03:48:01] 2025-10-14 01:43:12,937 | INFO     | sufficient remaining disk space (3348649476096 B)
[2025-10-14 03:48:01] 2025-10-14 01:43:12,937 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-14 03:48:01] 2025-10-14 01:43:12,937 | INFO     | current server update state: UPDATING_FINAL
[2025-10-14 03:48:01] 2025-10-14 01:43:12,938 | INFO     | update_server=False
[2025-10-14 03:48:01] 2025-10-14 01:43:12,938 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-14 03:48:01] 2025-10-14 01:43:12,938 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-14 03:48:01] 2025-10-14 01:43:12,938 | INFO     | aborting loop
[2025-10-14 03:48:01] 2025-10-14 01:43:13,158 | INFO     | all payload control threads have been joined
[2025-10-14 03:48:01] 2025-10-14 01:43:13,737 | INFO     | all job control threads have been joined
[2025-10-14 03:48:01] 2025-10-14 01:43:13,942 | INFO     | all data control threads have been joined
[2025-10-14 03:48:01] 2025-10-14 01:43:13,943 | INFO     | [job] retrieve thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:13,944 | INFO     | [job] job monitor thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:14,163 | INFO     | [payload] control thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:14,195 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-14 03:48:01] 2025-10-14 01:43:14,294 | INFO     | [payload] validate_post thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:14,571 | INFO     | [job] create_data_payload thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:14,649 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-14 03:48:01] 2025-10-14 01:43:14,724 | INFO     | [payload] execute_payloads thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:14,743 | INFO     | [job] control thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:14,868 | INFO     | [payload] validate_pre thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:14,905 | INFO     | [data] copytool_in thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:14,945 | INFO     | [data] control thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:14,989 | INFO     | [job] validate thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:15,431 | INFO     | [payload] failed_post thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:15,654 | INFO     | [job] queue monitor thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:16,200 | INFO     | [data] copytool_out thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:16,283 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-14 03:48:01] 2025-10-14 01:43:20,289 | INFO     | [data] queue_monitor thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:23,129 | INFO     | job.realtimelogging is not enabled
[2025-10-14 03:48:01] 2025-10-14 01:43:24,134 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-14 03:48:01] 2025-10-14 01:43:44,563 | INFO     | PID=2298769 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-14 03:48:01] 2025-10-14 01:43:44,564 | INFO     | .. there are 7 such processes running
[2025-10-14 03:48:01] 2025-10-14 01:43:44,566 | INFO     | found 0 job(s) in 20 queues
[2025-10-14 03:48:01] 2025-10-14 01:43:44,567 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-14 03:48:01] 2025-10-14 01:43:44,567 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-14 03:48:01] 2025-10-14 01:43:52,141 | INFO     | [monitor] cgroup control has ended
[2025-10-14 03:48:01] 2025-10-14 01:43:53,156 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23167262816064)>', '<ExcThread(monitor, started 23167024199424)>']
[2025-10-14 03:48:01] 2025-10-14 01:43:53,610 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-14 03:48:01] 2025-10-14 01:43:53,610 | INFO     | [monitor] control thread has ended
[2025-10-14 03:48:01] 2025-10-14 01:43:58,182 | INFO     | all workflow threads have been joined
[2025-10-14 03:48:01] 2025-10-14 01:43:58,182 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-14 03:48:01] 2025-10-14 01:43:58,182 | INFO     | traces error code: 0
[2025-10-14 03:48:01] 2025-10-14 01:43:58,182 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-14 03:48:01] 2025-10-14 01:43:58,340 [wrapper] ==== pilot stdout END ====
[2025-10-14 03:48:01] 2025-10-14 01:43:58,343 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-14 03:48:01] 2025-10-14 01:43:58,347 [wrapper] pilotpid: 2298769
[2025-10-14 03:48:01] 2025-10-14 01:43:58,350 [wrapper] Pilot exit status: 0
[2025-10-14 03:48:01] 2025-10-14 01:43:58,361 [wrapper] pandaids: 6839660066
[2025-10-14 03:48:01] 2025-10-14 01:43:58,525 [wrapper] cleanup supervisor_pilot 2773109 2298770
[2025-10-14 03:48:01] 2025-10-14 01:43:58,529 [wrapper] Test setup, not cleaning
[2025-10-14 03:48:01] 2025-10-14 01:43:58,533 [wrapper] apfmon messages muted
[2025-10-14 03:48:01] 2025-10-14 01:43:58,537 [wrapper] ==== wrapper stdout END ====
[2025-10-14 03:48:01] 2025-10-14 01:43:58,540 [wrapper] ==== wrapper stderr END ====
[2025-10-14 03:48:01]  *** Error codes and diagnostics ***
[2025-10-14 03:48:01]     "exeErrorCode": 0,
[2025-10-14 03:48:01]     "exeErrorDiag": "",
[2025-10-14 03:48:01]     "pilotErrorCode": 0,
[2025-10-14 03:48:01]     "pilotErrorDiag": "",
[2025-10-14 03:48:01]  *** Listing of results directory ***
[2025-10-14 03:48:01] total 410116
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:54 pilot3.tar.gz
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc      5112 Oct 12 09:48 queuedata.json
[2025-10-14 03:48:01] -rwx------ 1 boinc boinc     36292 Oct 12 09:48 runpilot2-wrapper.sh
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc       100 Oct 14 00:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-14 03:48:01] -rwxr-xr-x 1 boinc boinc      7986 Oct 14 00:51 run_atlas
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc       105 Oct 14 00:51 job.xml
[2025-10-14 03:48:01] -rw-r--r-- 2 boinc boinc 219880833 Oct 14 00:51 EVNT.46676267._003514.pool.root.1
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc      6688 Oct 14 00:51 init_data.xml
[2025-10-14 03:48:01] -rw-r--r-- 2 boinc boinc     15120 Oct 14 00:51 start_atlas.sh
[2025-10-14 03:48:01] drwxrwx--x 2 boinc boinc      4096 Oct 14 00:51 shared
[2025-10-14 03:48:01] -rw-r--r-- 2 boinc boinc    569678 Oct 14 00:51 input.tar.gz
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc         0 Oct 14 00:51 boinc_lockfile
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc      2550 Oct 14 00:51 pandaJob.out
[2025-10-14 03:48:01] -rw------- 1 boinc boinc    972799 Oct 14 00:51 agis_schedconf.cvmfs.json
[2025-10-14 03:48:01] -rw------- 1 boinc boinc   1560580 Oct 14 00:51 agis_ddmendpoints.agis.ALL.json
[2025-10-14 03:48:01] drwx------ 5 boinc boinc      4096 Oct 14 00:51 pilot3
[2025-10-14 03:48:01] -rw------- 1 boinc boinc 192607154 Oct 14 03:42 HITS.46676269._073838.pool.root.1
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc       529 Oct 14 03:42 boinc_task_state.xml
[2025-10-14 03:48:01] -rw------- 1 boinc boinc      1027 Oct 14 03:42 memory_monitor_summary.json
[2025-10-14 03:48:01] -rw------- 1 boinc boinc    358617 Oct 14 03:43 log.46676269._073838.job.log.tgz.1
[2025-10-14 03:48:01] -rw------- 1 boinc boinc      7790 Oct 14 03:43 heartbeat.json
[2025-10-14 03:48:01] -rw------- 1 boinc boinc        95 Oct 14 03:43 pilot_heartbeat.json
[2025-10-14 03:48:01] -rw------- 1 boinc boinc      4907 Oct 14 03:43 pilotlog.txt
[2025-10-14 03:48:01] -rw------- 1 boinc boinc   1428953 Oct 14 03:43 log.46676269._073838.job.log.1
[2025-10-14 03:48:01] -rw------- 1 boinc boinc       357 Oct 14 03:43 output.list
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc       620 Oct 14 03:43 runtime_log
[2025-10-14 03:48:01] -rw------- 1 boinc boinc   1802240 Oct 14 03:43 result.tar.gz
[2025-10-14 03:48:01] -rw------- 1 boinc boinc       665 Oct 14 03:43 VMZLDmnz5R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm23iNDmoKcFmm.diag
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc      9085 Oct 14 03:43 runtime_log.err
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc        26 Oct 14 03:47 wrapper_checkpoint.txt
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc      8192 Oct 14 03:48 boinc_mmap_file
[2025-10-14 03:48:01] -rw-r--r-- 1 boinc boinc     20966 Oct 14 03:48 stderr.txt
[2025-10-14 03:48:01] HITS file was successfully produced:
[2025-10-14 03:48:01] -rw------- 1 boinc boinc 192607154 Oct 14 03:42 shared/HITS.pool.root.1
[2025-10-14 03:48:01]  *** Contents of shared directory: ***
[2025-10-14 03:48:01] total 405168
[2025-10-14 03:48:01] -rw-r--r-- 2 boinc boinc 219880833 Oct 14 00:51 ATLAS.root_0
[2025-10-14 03:48:01] -rw-r--r-- 2 boinc boinc     15120 Oct 14 00:51 start_atlas.sh
[2025-10-14 03:48:01] -rw-r--r-- 2 boinc boinc    569678 Oct 14 00:51 input.tar.gz
[2025-10-14 03:48:01] -rw------- 1 boinc boinc 192607154 Oct 14 03:42 HITS.pool.root.1
[2025-10-14 03:48:01] -rw------- 1 boinc boinc   1802240 Oct 14 03:43 result.tar.gz
03:48:02 (2261754): run_atlas exited; CPU time 39983.184747
03:48:02 (2261754): called boinc_finish(0)

</stderr_txt>
]]>

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