Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:01:48 (22430): wrapper (7.7.26015): starting
10:01:48 (22430): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 10:01:48] Arguments: --nthreads 12
[2025-10-12 10:01:48] Threads: 12
[2025-10-12 10:01:48] Checking for CVMFS
[2025-10-12 10:01:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:01:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:01:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:01:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:01:49] 2.11.2.0 2979 222975 105616 151621 2 57 15501891 20275200 1 130560 2 108685929 99.984 13043834 12009 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:01:49] CVMFS is ok
[2025-10-12 10:01:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:01:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:01:49] Further information can be found at the LHC@home message board.
[2025-10-12 10:01:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:01:49] Checking for apptainer binary...
[2025-10-12 10:01:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:01:49] Running /usr/bin/apptainer --version
[2025-10-12 10:01:49] apptainer version 1.3.2-1.el7
[2025-10-12 10:01:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:01:50] c-205-7.aglt2.org
[2025-10-12 10:01:50] apptainer works
[2025-10-12 10:01:50] Set ATHENA_PROC_NUMBER=12
[2025-10-12 10:01:50] Set ATHENA_CORE_NUMBER=12
[2025-10-12 10:01:50] Starting ATLAS job with PandaID=6839988034
[2025-10-12 10:01:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:18:19]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:18:19]  replicas=None
[2025-10-12 11:18:19]  scope=mc23_13p6TeV
[2025-10-12 11:18:19]  status=None
[2025-10-12 11:18:19]  status_code=0
[2025-10-12 11:18:19]  storage_token=
[2025-10-12 11:18:19]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839988034/log.46676269._078377.job.log.tgz.1
[2025-10-12 11:18:19]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/8d/log.46676269._078377.job.log.tgz.1
[2025-10-12 11:18:19]  workdir=None
[2025-10-12 11:18:19] ]
[2025-10-12 11:18:19] 2025-10-12 15:17:12,249 | INFO     | transferring file log.46676269._078377.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839988034/log.46676269._078377.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 11:18:19] 2025-10-12 15:17:12,250 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839988034/log.46676269._078377.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._078377.job
[2025-10-12 11:18:19] 2025-10-12 15:17:12,272 | INFO     | adding to output.list: log.46676269._078377.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/8d/log.46676269._078377.job.log.tg
[2025-10-12 11:18:19] 2025-10-12 15:17:12,273 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 11:18:19] 2025-10-12 15:17:12,273 | INFO     | summary of transferred files:
[2025-10-12 11:18:19] 2025-10-12 15:17:12,273 | INFO     |  -- lfn=log.46676269._078377.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 11:18:19] 2025-10-12 15:17:12,274 | INFO     | stage-out finished correctly
[2025-10-12 11:18:19] 2025-10-12 15:17:12,320 | INFO     | time since job start (4506s) is within the limit (172800.0s)
[2025-10-12 11:18:19] 2025-10-12 15:17:13,332 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:18:19] 2025-10-12 15:17:14,076 | INFO     | monitor loop #335: job 0:6839988034 is in state 'finished'
[2025-10-12 11:18:19] 2025-10-12 15:17:14,077 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:18:19] 2025-10-12 15:17:14,326 | INFO     | time since job start (4508s) is within the limit (172800.0s)
[2025-10-12 11:18:19] 2025-10-12 15:17:16,310 | INFO     | job 6839988034 has state=finished
[2025-10-12 11:18:19] 2025-10-12 15:17:16,310 | INFO     | preparing for final server update for job 6839988034 in state='finished'
[2025-10-12 11:18:19] 2025-10-12 15:17:16,311 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:18:19] 2025-10-12 15:17:16,311 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:18:19] 2025-10-12 15:17:16,311 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:18:19] 2025-10-12 15:17:16,311 | INFO     | job 6839988034 has finished - writing final server update
[2025-10-12 11:18:19] 2025-10-12 15:17:16,312 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:18:19] 2025-10-12 15:17:16,313 | INFO     | executing command: lscpu
[2025-10-12 11:18:19] 2025-10-12 15:17:16,332 | INFO     | time since job start (4510s) is within the limit (172800.0s)
[2025-10-12 11:18:19] 2025-10-12 15:17:16,344 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:18:19] 2025-10-12 15:17:16,580 | INFO     | monitor loop #336: job 0:6839988034 is in state 'finished'
[2025-10-12 11:18:19] 2025-10-12 15:17:16,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:18:19] 2025-10-12 15:17:18,338 | INFO     | time since job start (4512s) is within the limit (172800.0s)
[2025-10-12 11:18:19] 2025-10-12 15:17:19,083 | INFO     | monitor loop #337: job 0:6839988034 is in state 'finished'
[2025-10-12 11:18:19] 2025-10-12 15:17:19,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:18:19] 2025-10-12 15:17:20,343 | INFO     | time since job start (4514s) is within the limit (172800.0s)
[2025-10-12 11:18:19] 2025-10-12 15:17:21,469 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 11:18:19] 2025-10-12 15:17:21,473 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-12 11:18:19] 2025-10-12 15:17:21,475 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839988034/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:18:19] 2025-10-12 15:17:21,476 | INFO     | extracted standard info from prmon json
[2025-10-12 11:18:19] 2025-10-12 15:17:21,476 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:18:19] 2025-10-12 15:17:21,476 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:18:19] 2025-10-12 15:17:21,477 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:18:19] 2025-10-12 15:17:21,477 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:18:19] 2025-10-12 15:17:21,478 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:18:19] 2025-10-12 15:17:21,478 | INFO     | sum of square deviations: 93240818.0
[2025-10-12 11:18:19] 2025-10-12 15:17:21,479 | INFO     | sum of deviations: 1196352740.0000002
[2025-10-12 11:18:19] 2025-10-12 15:17:21,479 | INFO     | mean x: 1760280072.0
[2025-10-12 11:18:19] 2025-10-12 15:17:21,479 | INFO     | mean y: 2675742.6716417912
[2025-10-12 11:18:19] 2025-10-12 15:17:21,479 | INFO     | -- intersect: -22583096588.33255
[2025-10-12 11:18:19] 2025-10-12 15:17:21,479 | INFO     | intersect: -22583096588.33255
[2025-10-12 11:18:19] 2025-10-12 15:17:21,479 | INFO     | chi2: 0.006439419593056395
[2025-10-12 11:18:19] 2025-10-12 15:17:21,479 | INFO     | -- intersect: -22583096588.33255
[2025-10-12 11:18:19] 2025-10-12 15:17:21,480 | INFO     | current memory leak: 12.83 B/s (using 67 data points, chi2=0.01)
[2025-10-12 11:18:19] 2025-10-12 15:17:21,480 | INFO     | could have reported an average CPU frequency of 2047 MHz (6 samples)
[2025-10-12 11:18:19] 2025-10-12 15:17:21,480 | INFO     | ..............................
[2025-10-12 11:18:19] 2025-10-12 15:17:21,480 | INFO     | . Timing measurements:
[2025-10-12 11:18:19] 2025-10-12 15:17:21,480 | INFO     | . get job = 0 s
[2025-10-12 11:18:19] 2025-10-12 15:17:21,480 | INFO     | . initial setup = 2 s
[2025-10-12 11:18:19] 2025-10-12 15:17:21,480 | INFO     | . payload setup = 7 s
[2025-10-12 11:18:19] 2025-10-12 15:17:21,481 | INFO     | . stage-in = 0 s
[2025-10-12 11:18:19] 2025-10-12 15:17:21,481 | INFO     | . payload execution = 4478 s
[2025-10-12 11:18:19] 2025-10-12 15:17:21,481 | INFO     | . stage-out = 0 s
[2025-10-12 11:18:19] 2025-10-12 15:17:21,481 | INFO     | . log creation = 0 s
[2025-10-12 11:18:19] 2025-10-12 15:17:21,481 | INFO     | ..............................
[2025-10-12 11:18:19] 2025-10-12 15:17:21,563 | INFO     | 
[2025-10-12 11:18:19] 2025-10-12 15:17:21,563 | INFO     | job summary report
[2025-10-12 11:18:19] 2025-10-12 15:17:21,564 | INFO     | --------------------------------------------------
[2025-10-12 11:18:19] 2025-10-12 15:17:21,564 | INFO     | PanDA job id: 6839988034
[2025-10-12 11:18:19] 2025-10-12 15:17:21,564 | INFO     | task id: 46676269
[2025-10-12 11:18:19] 2025-10-12 15:17:21,564 | INFO     | errors: (none)
[2025-10-12 11:18:19] 2025-10-12 15:17:21,564 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:18:19] 2025-10-12 15:17:21,564 | INFO     | pilot state: finished 
[2025-10-12 11:18:19] 2025-10-12 15:17:21,565 | INFO     | transexitcode: 0
[2025-10-12 11:18:19] 2025-10-12 15:17:21,565 | INFO     | exeerrorcode: 0
[2025-10-12 11:18:19] 2025-10-12 15:17:21,565 | INFO     | exeerrordiag: 
[2025-10-12 11:18:19] 2025-10-12 15:17:21,565 | INFO     | exitcode: 0
[2025-10-12 11:18:19] 2025-10-12 15:17:21,565 | INFO     | exitmsg: OK
[2025-10-12 11:18:19] 2025-10-12 15:17:21,565 | INFO     | cpuconsumptiontime: 47091 s
[2025-10-12 11:18:19] 2025-10-12 15:17:21,566 | INFO     | nevents: 400
[2025-10-12 11:18:19] 2025-10-12 15:17:21,566 | INFO     | neventsw: 0
[2025-10-12 11:18:19] 2025-10-12 15:17:21,566 | INFO     | pid: 32530
[2025-10-12 11:18:19] 2025-10-12 15:17:21,566 | INFO     | pgrp: 32530
[2025-10-12 11:18:19] 2025-10-12 15:17:21,566 | INFO     | corecount: 12
[2025-10-12 11:18:19] 2025-10-12 15:17:21,566 | INFO     | event service: False
[2025-10-12 11:18:19] 2025-10-12 15:17:21,566 | INFO     | sizes: {0: 2348686, 1: 2348885, 6: 2349147, 11: 2349175, 4489: 2375279, 4490: 2384277, 4492: 2384461, 4500: 2384655}
[2025-10-12 11:18:19] 2025-10-12 15:17:21,566 | INFO     | --------------------------------------------------
[2025-10-12 11:18:19] 2025-10-12 15:17:21,566 | INFO     | 
[2025-10-12 11:18:19] 2025-10-12 15:17:21,567 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 11:18:19] 2025-10-12 15:17:21,591 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,591 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,591 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,592 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,592 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,592 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,592 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,592 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,593 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,593 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,593 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,593 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,593 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,593 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,594 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,594 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,594 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,594 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:18:19] 2025-10-12 15:17:21,594 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,594 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:18:19] 2025-10-12 15:17:21,595 | INFO     | job 6839988034 has completed (purged errors)
[2025-10-12 11:18:19] 2025-10-12 15:17:21,595 | INFO     | overall cleanup function is called
[2025-10-12 11:18:19] 2025-10-12 15:17:22,603 | INFO     | --- collectZombieJob: --- 10, [32530]
[2025-10-12 11:18:19] 2025-10-12 15:17:22,603 | INFO     | zombie collector waiting for pid 32530
[2025-10-12 11:18:19] 2025-10-12 15:17:22,603 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:18:19] 2025-10-12 15:17:22,603 | INFO     | collected zombie processes
[2025-10-12 11:18:19] 2025-10-12 15:17:22,604 | INFO     | will attempt to kill all subprocesses of pid=32530
[2025-10-12 11:18:19] 2025-10-12 15:17:22,694 | INFO     | process IDs to be killed: [32530] (in reverse order)
[2025-10-12 11:18:19] 2025-10-12 15:17:22,747 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:18:19] 2025-10-12 15:17:22,748 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:18:19] 2025-10-12 15:17:22,751 | INFO     | did not find any defunct processes belonging to 32530
[2025-10-12 11:18:19] 2025-10-12 15:17:22,755 | INFO     | did not find any defunct processes belonging to 32530
[2025-10-12 11:18:19] 2025-10-12 15:17:22,755 | INFO     | ready for new job
[2025-10-12 11:18:19] 2025-10-12 15:17:22,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:18:19] 2025-10-12 15:17:22,756 | INFO     | ***************************************
[2025-10-12 11:18:19] 2025-10-12 15:17:22,757 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:18:19] 2025-10-12 15:17:22,757 | INFO     | ***************************************
[2025-10-12 11:18:19] 2025-10-12 15:17:22,757 | INFO     | 
[2025-10-12 11:18:19] 2025-10-12 15:17:22,757 | INFO     | architecture information:
[2025-10-12 11:18:19] 2025-10-12 15:17:22,758 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:18:19] 2025-10-12 15:17:22,773 | INFO     | cat /etc/os-release:
[2025-10-12 11:18:19] NAME="CentOS Linux"
[2025-10-12 11:18:19] VERSION="7 (Core)"
[2025-10-12 11:18:19] ID="centos"
[2025-10-12 11:18:19] ID_LIKE="rhel fedora"
[2025-10-12 11:18:19] VERSION_ID="7"
[2025-10-12 11:18:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:18:19] ANSI_COLOR="0;31"
[2025-10-12 11:18:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:18:19] HOME_URL="https://www.centos.org/"
[2025-10-12 11:18:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:18:19] 
[2025-10-12 11:18:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:18:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:18:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:18:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:18:19] 
[2025-10-12 11:18:19] 2025-10-12 15:17:22,773 | INFO     | ***************************************
[2025-10-12 11:18:19] 2025-10-12 15:17:23,276 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:18:19] 2025-10-12 15:17:23,292 | INFO     | sufficient remaining disk space (29365370880 B)
[2025-10-12 11:18:19] 2025-10-12 15:17:23,292 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:18:19] 2025-10-12 15:17:23,292 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:18:19] 2025-10-12 15:17:23,293 | INFO     | update_server=False
[2025-10-12 11:18:19] 2025-10-12 15:17:23,293 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:18:19] 2025-10-12 15:17:23,293 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:18:19] 2025-10-12 15:17:23,293 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:18:19] 2025-10-12 15:17:23,294 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:18:19] 2025-10-12 15:17:23,294 | INFO     | aborting loop
[2025-10-12 11:18:19] 2025-10-12 15:17:23,346 | INFO     | all job control threads have been joined
[2025-10-12 11:18:19] 2025-10-12 15:17:23,918 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:18:19] 2025-10-12 15:17:23,963 | INFO     | all payload control threads have been joined
[2025-10-12 11:18:19] 2025-10-12 15:17:23,985 | INFO     | all data control threads have been joined
[2025-10-12 11:18:19] 2025-10-12 15:17:24,298 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,299 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,299 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,300 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,332 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,336 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,352 | INFO     | [job] control thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,913 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,968 | INFO     | [payload] control thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:24,990 | INFO     | [data] control thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:25,022 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:25,300 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:25,393 | INFO     | [job] validate thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:25,640 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:27,922 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:18:19] 2025-10-12 15:17:53,546 | INFO     | PID=26177 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 11:18:19] 2025-10-12 15:17:53,547 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:18:19] 2025-10-12 15:17:53,547 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:18:19] 2025-10-12 15:17:53,547 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:18:19] 2025-10-12 15:18:12,637 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:18:19] 2025-10-12 15:18:13,686 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140653211395904)>', '<ExcThread(monitor, started 140652780181248)>']
[2025-10-12 11:18:19] 2025-10-12 15:18:14,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:18:19] 2025-10-12 15:18:14,654 | INFO     | [monitor] control thread has ended
[2025-10-12 11:18:19] 2025-10-12 15:18:18,711 | INFO     | all workflow threads have been joined
[2025-10-12 11:18:19] 2025-10-12 15:18:18,712 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:18:19] 2025-10-12 15:18:18,712 | INFO     | traces error code: 0
[2025-10-12 11:18:19] 2025-10-12 15:18:18,712 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:18:19] 2025-10-12 15:18:18,807 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:18:19] 2025-10-12 15:18:18,811 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:18:19] 2025-10-12 15:18:18,815 [wrapper] pilotpid: 26177
[2025-10-12 11:18:19] 2025-10-12 15:18:18,819 [wrapper] Pilot exit status: 0
[2025-10-12 11:18:19] 2025-10-12 15:18:18,833 [wrapper] pandaids: 6839988034
[2025-10-12 11:18:19] 2025-10-12 15:18:18,879 [wrapper] cleanup supervisor_pilot 17048 26178
[2025-10-12 11:18:19] 2025-10-12 15:18:18,883 [wrapper] Test setup, not cleaning
[2025-10-12 11:18:19] 2025-10-12 15:18:18,887 [wrapper] apfmon messages muted
[2025-10-12 11:18:19] 2025-10-12 15:18:18,891 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:18:19] 2025-10-12 15:18:18,895 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:18:19]  *** Error codes and diagnostics ***
[2025-10-12 11:18:19]     "exeErrorCode": 0,
[2025-10-12 11:18:19]     "exeErrorDiag": "",
[2025-10-12 11:18:19]     "pilotErrorCode": 0,
[2025-10-12 11:18:19]     "pilotErrorDiag": "",
[2025-10-12 11:18:19]  *** Listing of results directory ***
[2025-10-12 11:18:19] total 411408
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 08:35 pilot3.tar.gz
[2025-10-12 11:18:19] -rwx------ 1 boincer umatlas     36292 Oct 12 08:40 runpilot2-wrapper.sh
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 08:40 queuedata.json
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:18:19] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:01 run_atlas
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:01 job.xml
[2025-10-12 11:18:19] -rw-r--r-- 2 boincer umatlas 220677889 Oct 12 10:01 EVNT.46676267._003798.pool.root.1
[2025-10-12 11:18:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:01 start_atlas.sh
[2025-10-12 11:18:19] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:01 shared
[2025-10-12 11:18:19] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 10:01 input.tar.gz
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:01 boinc_lockfile
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 10:01 pandaJob.out
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas    975528 Oct 12 10:02 agis_schedconf.cvmfs.json
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas   1560580 Oct 12 10:02 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:18:19] drwx------ 5 boincer umatlas      4096 Oct 12 10:02 pilot3
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas      5952 Oct 12 11:12 init_data.xml
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas       529 Oct 12 11:16 boinc_task_state.xml
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas 194607527 Oct 12 11:16 HITS.46676269._078377.pool.root.1
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas        95 Oct 12 11:17 pilot_heartbeat.json
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas      1049 Oct 12 11:17 memory_monitor_summary.json
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas    396606 Oct 12 11:17 log.46676269._078377.job.log.tgz.1
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas      7853 Oct 12 11:17 heartbeat.json
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 11:17 boinc_mmap_file
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas        27 Oct 12 11:18 wrapper_checkpoint.txt
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas      4746 Oct 12 11:18 pilotlog.txt
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas    653816 Oct 12 11:18 log.46676269._078377.job.log.1
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas       357 Oct 12 11:18 output.list
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas       620 Oct 12 11:18 runtime_log
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas   1064960 Oct 12 11:18 result.tar.gz
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas      8700 Oct 12 11:18 runtime_log.err
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas       658 Oct 12 11:18 mDcMDm6XAS8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuojNDmcybWsn.diag
[2025-10-12 11:18:19] -rw-r--r-- 1 boincer umatlas     21860 Oct 12 11:18 stderr.txt
[2025-10-12 11:18:19] HITS file was successfully produced:
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas 194607527 Oct 12 11:16 shared/HITS.pool.root.1
[2025-10-12 11:18:19]  *** Contents of shared directory: ***
[2025-10-12 11:18:19] total 407176
[2025-10-12 11:18:19] -rw-r--r-- 2 boincer umatlas 220677889 Oct 12 10:01 ATLAS.root_0
[2025-10-12 11:18:19] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:01 start_atlas.sh
[2025-10-12 11:18:19] -rw-r--r-- 2 boincer umatlas    569678 Oct 12 10:01 input.tar.gz
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas 194607527 Oct 12 11:16 HITS.pool.root.1
[2025-10-12 11:18:19] -rw------- 1 boincer umatlas   1064960 Oct 12 11:18 result.tar.gz
11:18:20 (22430): run_atlas exited; CPU time 47067.031851
11:18:20 (22430): called boinc_finish(0)

</stderr_txt>
]]>

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