Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:39:29 (3217): wrapper (7.7.26015): starting
00:39:29 (3217): wrapper: running run_atlas (--nthreads 8)
[2025-10-13 00:39:29] Arguments: --nthreads 8
[2025-10-13 00:39:29] Threads: 8
[2025-10-13 00:39:29] Checking for CVMFS
[2025-10-13 00:39:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:39:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:39:31] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:39:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:39:32] 2.11.2.0 2281 107987 133600 151640 2 60 23283681 25165824 4632 130560 0 35969635 99.907 15849290 2595 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2025-10-13 00:39:32] CVMFS is ok
[2025-10-13 00:39:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:39:32] Checking for apptainer binary...
[2025-10-13 00:39:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:39:32] Running /usr/bin/apptainer --version
[2025-10-13 00:39:32] apptainer version 1.3.2-1.el7
[2025-10-13 00:39:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:39:47] cg-vwn445.simple-grid.lan
[2025-10-13 00:39:47] apptainer works
[2025-10-13 00:39:48] Set ATHENA_PROC_NUMBER=8
[2025-10-13 00:39:48] Set ATHENA_CORE_NUMBER=8
[2025-10-13 00:39:48] Starting ATLAS job with PandaID=6839660284
[2025-10-13 00:39:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 05:04:12]  *** The last 200 lines of the pilot log: ***
[2025-10-13 05:04:12] 2025-10-13 03:03:10,024 | INFO     | sum of square deviations: 4616114457.5
[2025-10-13 05:04:12] 2025-10-13 03:03:10,026 | INFO     | sum of deviations: 79736152836.5
[2025-10-13 05:04:12] 2025-10-13 03:03:10,027 | INFO     | mean x: 1760316969.5
[2025-10-13 05:04:12] 2025-10-13 03:03:10,027 | INFO     | mean y: 2452066.0691056913
[2025-10-13 05:04:12] 2025-10-13 03:03:10,027 | INFO     | -- intersect: -30404268610.60001
[2025-10-13 05:04:12] 2025-10-13 03:03:10,027 | INFO     | intersect: -30404268610.60001
[2025-10-13 05:04:12] 2025-10-13 03:03:10,027 | INFO     | chi2: 5.518277489524132
[2025-10-13 05:04:12] 2025-10-13 03:03:10,028 | INFO     | sum of square deviations: 4340323240.0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,030 | INFO     | sum of deviations: 93948832129.00002
[2025-10-13 05:04:12] 2025-10-13 03:03:10,030 | INFO     | mean x: 1760316817.0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,030 | INFO     | mean y: 2459776.269709544
[2025-10-13 05:04:12] 2025-10-13 03:03:10,030 | INFO     | -- intersect: -38100626097.626785
[2025-10-13 05:04:12] 2025-10-13 03:03:10,030 | INFO     | intersect: -38100626097.626785
[2025-10-13 05:04:12] 2025-10-13 03:03:10,031 | INFO     | chi2: 4.793054088008932
[2025-10-13 05:04:12] 2025-10-13 03:03:10,031 | INFO     | current chi2=4.793054088008932 (change=13.142206112178295 %)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,031 | INFO     | right removable region: 240
[2025-10-13 05:04:12] 2025-10-13 03:03:10,031 | INFO     | sum of square deviations: 4340323240.0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,033 | INFO     | sum of deviations: -1388011811.999998
[2025-10-13 05:04:12] 2025-10-13 03:03:10,034 | INFO     | mean x: 1760317122.0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,034 | INFO     | mean y: 2496871.124481328
[2025-10-13 05:04:12] 2025-10-13 03:03:10,034 | INFO     | -- intersect: 565436731.3828712
[2025-10-13 05:04:12] 2025-10-13 03:03:10,034 | INFO     | intersect: 565436731.3828712
[2025-10-13 05:04:12] 2025-10-13 03:03:10,034 | INFO     | chi2: 1.3093372740498834
[2025-10-13 05:04:12] 2025-10-13 03:03:10,034 | INFO     | current chi2=1.3093372740498834 (change=76.27271777224827 %)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,035 | INFO     | sum of square deviations: 4075741535.0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,037 | INFO     | sum of deviations: -21607576038.0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,037 | INFO     | mean x: 1760317274.5
[2025-10-13 05:04:12] 2025-10-13 03:03:10,037 | INFO     | mean y: 2508417.2711864407
[2025-10-13 05:04:12] 2025-10-13 03:03:10,037 | INFO     | -- intersect: 9334844394.204931
[2025-10-13 05:04:12] 2025-10-13 03:03:10,037 | INFO     | intersect: 9334844394.204931
[2025-10-13 05:04:12] 2025-10-13 03:03:10,038 | INFO     | chi2: 0.8616939978836298
[2025-10-13 05:04:12] 2025-10-13 03:03:10,038 | INFO     | current chi2=0.8616939978836298 (change=34.18853835739799 %)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,038 | INFO     | sum of square deviations: 3822136780.0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,040 | INFO     | sum of deviations: -19027147144.999996
[2025-10-13 05:04:12] 2025-10-13 03:03:10,040 | INFO     | mean x: 1760317427.0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,040 | INFO     | mean y: 2506833.4502164503
[2025-10-13 05:04:12] 2025-10-13 03:03:10,040 | INFO     | -- intersect: 8765620409.264421
[2025-10-13 05:04:12] 2025-10-13 03:03:10,041 | INFO     | intersect: 8765620409.264421
[2025-10-13 05:04:12] 2025-10-13 03:03:10,041 | INFO     | chi2: 0.8458083234421101
[2025-10-13 05:04:12] 2025-10-13 03:03:10,041 | INFO     | current chi2=0.8458083234421101 (change=1.8435401059466359 %)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,041 | INFO     | left removable region: 30
[2025-10-13 05:04:12] 2025-10-13 03:03:10,042 | INFO     | sum of square deviations: 2871616632.5
[2025-10-13 05:04:12] 2025-10-13 03:03:10,043 | INFO     | sum of deviations: 5252655984.499999
[2025-10-13 05:04:12] 2025-10-13 03:03:10,043 | INFO     | mean x: 1760317701.5
[2025-10-13 05:04:12] 2025-10-13 03:03:10,043 | INFO     | mean y: 2510267.719047619
[2025-10-13 05:04:12] 2025-10-13 03:03:10,044 | INFO     | -- intersect: -3217398408.375883
[2025-10-13 05:04:12] 2025-10-13 03:03:10,044 | INFO     | intersect: -3217398408.375883
[2025-10-13 05:04:12] 2025-10-13 03:03:10,044 | INFO     | chi2: 0.00042514716182874817
[2025-10-13 05:04:12] 2025-10-13 03:03:10,044 | INFO     | -- intersect: -3217398408.375883
[2025-10-13 05:04:12] 2025-10-13 03:03:10,044 | INFO     | current memory leak: 1.83 B/s (using 210 data points, chi2=0.00)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,045 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,045 | INFO     | ..............................
[2025-10-13 05:04:12] 2025-10-13 03:03:10,045 | INFO     | . Timing measurements:
[2025-10-13 05:04:12] 2025-10-13 03:03:10,045 | INFO     | . get job = 0 s
[2025-10-13 05:04:12] 2025-10-13 03:03:10,045 | INFO     | . initial setup = 11 s
[2025-10-13 05:04:12] 2025-10-13 03:03:10,046 | INFO     | . payload setup = 118 s
[2025-10-13 05:04:12] 2025-10-13 03:03:10,046 | INFO     | . stage-in = 0 s
[2025-10-13 05:04:12] 2025-10-13 03:03:10,046 | INFO     | . payload execution = 15150 s
[2025-10-13 05:04:12] 2025-10-13 03:03:10,046 | INFO     | . stage-out = 3 s
[2025-10-13 05:04:12] 2025-10-13 03:03:10,046 | INFO     | . log creation = 1 s
[2025-10-13 05:04:12] 2025-10-13 03:03:10,046 | INFO     | ..............................
[2025-10-13 05:04:12] 2025-10-13 03:03:10,173 | INFO     | 
[2025-10-13 05:04:12] 2025-10-13 03:03:10,173 | INFO     | job summary report
[2025-10-13 05:04:12] 2025-10-13 03:03:10,173 | INFO     | --------------------------------------------------
[2025-10-13 05:04:12] 2025-10-13 03:03:10,173 | INFO     | PanDA job id: 6839660284
[2025-10-13 05:04:12] 2025-10-13 03:03:10,173 | INFO     | task id: 46676269
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | errors: (none)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | pilot state: finished 
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | transexitcode: 0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | exeerrorcode: 0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | exeerrordiag: 
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | exitcode: 0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | exitmsg: OK
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | cpuconsumptiontime: 56656 s
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | nevents: 400
[2025-10-13 05:04:12] 2025-10-13 03:03:10,174 | INFO     | neventsw: 0
[2025-10-13 05:04:12] 2025-10-13 03:03:10,175 | INFO     | pid: 13794
[2025-10-13 05:04:12] 2025-10-13 03:03:10,175 | INFO     | pgrp: 13794
[2025-10-13 05:04:12] 2025-10-13 03:03:10,175 | INFO     | corecount: 8
[2025-10-13 05:04:12] 2025-10-13 03:03:10,175 | INFO     | event service: False
[2025-10-13 05:04:12] 2025-10-13 03:03:10,175 | INFO     | sizes: {0: 2348029, 1: 2348886, 2: 2348886, 13: 2348914, 23: 2348970, 34: 2348998, 45: 2349154, 55: 2349182, 66: 2349210, 77: 2349238, 88: 2349294, 98: 2349602, 10
[2025-10-13 05:04:12] 2025-10-13 03:03:10,175 | INFO     | --------------------------------------------------
[2025-10-13 05:04:12] 2025-10-13 03:03:10,175 | INFO     | 
[2025-10-13 05:04:12] 2025-10-13 03:03:10,175 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-10-13 05:04:12] 2025-10-13 03:03:10,299 | INFO     | time since job start (15574s) is within the limit (172800.0s)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,541 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,542 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,542 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,542 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,542 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,542 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,542 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,542 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,542 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,542 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,543 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 05:04:12] 2025-10-13 03:03:10,544 | INFO     | job 6839660284 has completed (purged errors)
[2025-10-13 05:04:12] 2025-10-13 03:03:10,544 | INFO     | overall cleanup function is called
[2025-10-13 05:04:12] 2025-10-13 03:03:11,552 | INFO     | --- collectZombieJob: --- 10, [13794]
[2025-10-13 05:04:12] 2025-10-13 03:03:11,552 | INFO     | zombie collector waiting for pid 13794
[2025-10-13 05:04:12] 2025-10-13 03:03:11,552 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 05:04:12] 2025-10-13 03:03:11,553 | INFO     | collected zombie processes
[2025-10-13 05:04:12] 2025-10-13 03:03:11,553 | INFO     | will attempt to kill all subprocesses of pid=13794
[2025-10-13 05:04:12] 2025-10-13 03:03:11,653 | INFO     | process IDs to be killed: [13794] (in reverse order)
[2025-10-13 05:04:12] 2025-10-13 03:03:12,585 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 05:04:12] 2025-10-13 03:03:12,586 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 05:04:12] 2025-10-13 03:03:12,589 | INFO     | did not find any defunct processes belonging to 13794
[2025-10-13 05:04:12] 2025-10-13 03:03:12,593 | INFO     | did not find any defunct processes belonging to 13794
[2025-10-13 05:04:12] 2025-10-13 03:03:12,593 | INFO     | ready for new job
[2025-10-13 05:04:12] 2025-10-13 03:03:12,593 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 05:04:12] 2025-10-13 03:03:12,599 | INFO     | ***************************************
[2025-10-13 05:04:12] 2025-10-13 03:03:12,599 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 05:04:12] 2025-10-13 03:03:12,599 | INFO     | ***************************************
[2025-10-13 05:04:12] 2025-10-13 03:03:12,599 | INFO     | 
[2025-10-13 05:04:12] 2025-10-13 03:03:12,600 | INFO     | pilot is running in a VM
[2025-10-13 05:04:12] 2025-10-13 03:03:12,600 | INFO     | architecture information:
[2025-10-13 05:04:12] 2025-10-13 03:03:12,615 | INFO     | executing command: cat /etc/os-release
[2025-10-13 05:04:12] 2025-10-13 03:03:12,883 | INFO     | cat /etc/os-release:
[2025-10-13 05:04:12] NAME="CentOS Linux"
[2025-10-13 05:04:12] VERSION="7 (Core)"
[2025-10-13 05:04:12] ID="centos"
[2025-10-13 05:04:12] ID_LIKE="rhel fedora"
[2025-10-13 05:04:12] VERSION_ID="7"
[2025-10-13 05:04:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 05:04:12] ANSI_COLOR="0;31"
[2025-10-13 05:04:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 05:04:12] HOME_URL="https://www.centos.org/"
[2025-10-13 05:04:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 05:04:12] 
[2025-10-13 05:04:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 05:04:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 05:04:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 05:04:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 05:04:12] 
[2025-10-13 05:04:12] 2025-10-13 03:03:12,884 | INFO     | ***************************************
[2025-10-13 05:04:12] 2025-10-13 03:03:13,387 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-10-13 05:04:12] 2025-10-13 03:03:13,455 | INFO     | sufficient remaining disk space (495063138304 B)
[2025-10-13 05:04:12] 2025-10-13 03:03:13,456 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 05:04:12] 2025-10-13 03:03:13,456 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 05:04:12] 2025-10-13 03:03:13,456 | INFO     | update_server=False
[2025-10-13 05:04:12] 2025-10-13 03:03:13,456 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 05:04:12] 2025-10-13 03:03:13,496 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 05:04:12] 2025-10-13 03:03:13,496 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 05:04:12] 2025-10-13 03:03:13,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:04:12] 2025-10-13 03:03:13,497 | INFO     | will abort loop
[2025-10-13 05:04:12] 2025-10-13 03:03:13,646 | INFO     | all data control threads have been joined
[2025-10-13 05:04:12] 2025-10-13 03:03:14,462 | INFO     | [job] retrieve thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:14,502 | INFO     | [job] job monitor thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:14,610 | INFO     | [data] copytool_in thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:14,652 | INFO     | [data] control thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:14,692 | INFO     | all payload control threads have been joined
[2025-10-13 05:04:12] 2025-10-13 03:03:14,711 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 05:04:12] 2025-10-13 03:03:14,796 | INFO     | [job] validate thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:14,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:14,867 | INFO     | [payload] validate_post thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:15,032 | INFO     | [payload] failed_post thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:15,168 | INFO     | all job control threads have been joined
[2025-10-13 05:04:12] 2025-10-13 03:03:15,187 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 05:04:12] 2025-10-13 03:03:15,312 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:15,532 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:15,579 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:15,698 | INFO     | [payload] control thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:16,174 | INFO     | [job] control thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:16,192 | INFO     | [job] queue monitor thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:16,718 | INFO     | [data] copytool_out thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:16,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 05:04:12] 2025-10-13 03:03:20,797 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 05:04:12] 2025-10-13 03:03:43,452 | INFO     | PID=6965 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-13 05:04:12] 2025-10-13 03:03:43,453 | INFO     | .. there are 9 such processes running
[2025-10-13 05:04:12] 2025-10-13 03:03:43,453 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 05:04:12] 2025-10-13 03:03:43,453 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 05:04:12] 2025-10-13 03:03:43,453 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 05:04:12] 2025-10-13 03:04:01,763 | INFO     | [monitor] cgroup control has ended
[2025-10-13 05:04:12] 2025-10-13 03:04:02,868 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140081059383104)>', '<ExcThread(monitor, started 140080475789056)>']
[2025-10-13 05:04:12] 2025-10-13 03:04:03,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 05:04:12] 2025-10-13 03:04:03,572 | INFO     | [monitor] control thread has ended
[2025-10-13 05:04:12] 2025-10-13 03:04:07,894 | INFO     | all workflow threads have been joined
[2025-10-13 05:04:12] 2025-10-13 03:04:07,894 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 05:04:12] 2025-10-13 03:04:07,895 | INFO     | traces error code: 0
[2025-10-13 05:04:12] 2025-10-13 03:04:07,895 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 05:04:12] 2025-10-13 03:04:08,128 [wrapper] ==== pilot stdout END ====
[2025-10-13 05:04:12] 2025-10-13 03:04:08,185 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 05:04:12] 2025-10-13 03:04:08,235 [wrapper] pilotpid: 6965
[2025-10-13 05:04:12] 2025-10-13 03:04:08,341 [wrapper] Pilot exit status: 0
[2025-10-13 05:04:12] 2025-10-13 03:04:08,866 [wrapper] pandaids: 6839660284
[2025-10-13 05:04:12] 2025-10-13 03:04:09,753 [wrapper] cleanup supervisor_pilot  6279 6966
[2025-10-13 05:04:12] 2025-10-13 03:04:09,870 [wrapper] Test setup, not cleaning
[2025-10-13 05:04:12] 2025-10-13 03:04:09,942 [wrapper] apfmon messages muted
[2025-10-13 05:04:12] 2025-10-13 03:04:10,012 [wrapper] ==== wrapper stdout END ====
[2025-10-13 05:04:12] 2025-10-13 03:04:10,073 [wrapper] ==== wrapper stderr END ====
[2025-10-13 05:04:12]  *** Error codes and diagnostics ***
[2025-10-13 05:04:12]     "exeErrorCode": 0,
[2025-10-13 05:04:12]     "exeErrorDiag": "",
[2025-10-13 05:04:12]     "pilotErrorCode": 0,
[2025-10-13 05:04:12]     "pilotErrorDiag": "",
[2025-10-13 05:04:12]  *** Listing of results directory ***
[2025-10-13 05:04:12] total 416692
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc    557409 Oct 12 08:54 pilot3.tar.gz
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc      5112 Oct 12 09:55 queuedata.json
[2025-10-13 05:04:12] -rwx------. 1 boinc boinc     36292 Oct 12 09:56 runpilot2-wrapper.sh
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc       100 Oct 13 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 05:04:12] -rwxr-xr-x. 1 boinc boinc      7986 Oct 13 00:39 run_atlas
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc       105 Oct 13 00:39 job.xml
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc      6387 Oct 13 00:39 init_data.xml
[2025-10-13 05:04:12] -rw-r--r--. 2 boinc boinc 220451283 Oct 13 00:39 EVNT.46676267._003521.pool.root.1
[2025-10-13 05:04:12] -rw-r--r--. 2 boinc boinc     15120 Oct 13 00:39 start_atlas.sh
[2025-10-13 05:04:12] drwxrwx--x. 2 boinc boinc        68 Oct 13 00:39 shared
[2025-10-13 05:04:12] -rw-r--r--. 2 boinc boinc    569681 Oct 13 00:39 input.tar.gz
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc         0 Oct 13 00:39 boinc_lockfile
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc      2550 Oct 13 00:39 pandaJob.out
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc    975603 Oct 13 00:43 agis_schedconf.cvmfs.json
[2025-10-13 05:04:12] drwx------. 5 boinc boinc      4096 Oct 13 00:43 pilot3
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc 197243432 Oct 13 05:00 HITS.46676269._073977.pool.root.1
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc       531 Oct 13 05:00 boinc_task_state.xml
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc      1018 Oct 13 05:01 memory_monitor_summary.json
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc   1560580 Oct 13 05:01 agis_ddmendpoints.agis.ALL.json
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc    471849 Oct 13 05:01 log.46676269._073977.job.log.tgz.1
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc        95 Oct 13 05:02 pilot_heartbeat.json
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc      7782 Oct 13 05:03 heartbeat.json
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc      8192 Oct 13 05:03 boinc_mmap_file
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc        28 Oct 13 05:03 wrapper_checkpoint.txt
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc      5070 Oct 13 05:04 pilotlog.txt
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc   2079377 Oct 13 05:04 log.46676269._073977.job.log.1
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc       357 Oct 13 05:04 output.list
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc       620 Oct 13 05:04 runtime_log
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc   2570240 Oct 13 05:04 result.tar.gz
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc      8717 Oct 13 05:04 runtime_log.err
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc       656 Oct 13 05:04 JlSKDmI75R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm95iNDms2e28m.diag
[2025-10-13 05:04:12] -rw-r--r--. 1 boinc boinc     20675 Oct 13 05:04 stderr.txt
[2025-10-13 05:04:12] HITS file was successfully produced:
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc 197243432 Oct 13 05:00 shared/HITS.pool.root.1
[2025-10-13 05:04:12]  *** Contents of shared directory: ***
[2025-10-13 05:04:12] total 411000
[2025-10-13 05:04:12] -rw-r--r--. 2 boinc boinc 220451283 Oct 13 00:39 ATLAS.root_0
[2025-10-13 05:04:12] -rw-r--r--. 2 boinc boinc     15120 Oct 13 00:39 start_atlas.sh
[2025-10-13 05:04:12] -rw-r--r--. 2 boinc boinc    569681 Oct 13 00:39 input.tar.gz
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc 197243432 Oct 13 05:00 HITS.pool.root.1
[2025-10-13 05:04:12] -rw-------. 1 boinc boinc   2570240 Oct 13 05:04 result.tar.gz
05:04:14 (3217): run_atlas exited; CPU time 56873.214100
05:04:14 (3217): called boinc_finish(0)

</stderr_txt>
]]>

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