Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
10:01:23 (4305): wrapper (7.7.26015): starting
10:01:23 (4305): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:01:23] Arguments: --nthreads 8
[2025-10-12 10:01:23] Threads: 8
[2025-10-12 10:01:23] Checking for CVMFS
[2025-10-12 10:01:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:01:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:01:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:01:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:01:23] 2.11.2.0 1598 216296 123912 151621 2 188 10477121 20275201 917 130560 1 221687267 99.992 11705872 11177 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 10:01:23] CVMFS is ok
[2025-10-12 10:01:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:01:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:01:23] Further information can be found at the LHC@home message board.
[2025-10-12 10:01:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:01:23] Checking for apptainer binary...
[2025-10-12 10:01:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:01:23] Running /usr/bin/apptainer --version
[2025-10-12 10:01:23] apptainer version 1.3.2-1.el7
[2025-10-12 10:01:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:01:24] c-205-36.aglt2.org
[2025-10-12 10:01:24] apptainer works
[2025-10-12 10:01:24] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:01:24] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:01:24] Starting ATLAS job with PandaID=6839660015
[2025-10-12 10:01:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:07:47]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:07:47]  protocol_id=None
[2025-10-12 11:07:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-12 11:07:47]  replicas=None
[2025-10-12 11:07:47]  scope=mc23_13p6TeV
[2025-10-12 11:07:47]  status=None
[2025-10-12 11:07:47]  status_code=0
[2025-10-12 11:07:47]  storage_token=
[2025-10-12 11:07:47]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839660015/log.46676269._073787.job.log.tgz.1
[2025-10-12 11:07:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/21/log.46676269._073787.job.log.tgz.1
[2025-10-12 11:07:47]  workdir=None
[2025-10-12 11:07:47] ]
[2025-10-12 11:07:47] 2025-10-12 15:06:46,628 | INFO     | transferring file log.46676269._073787.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839660015/log.46676269._073787.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 11:07:47] 2025-10-12 15:06:46,628 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839660015/log.46676269._073787.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._073787.job
[2025-10-12 11:07:47] 2025-10-12 15:06:46,652 | INFO     | adding to output.list: log.46676269._073787.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/21/log.46676269._073787.job.log.tg
[2025-10-12 11:07:47] 2025-10-12 15:06:46,653 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 11:07:47] 2025-10-12 15:06:46,653 | INFO     | summary of transferred files:
[2025-10-12 11:07:47] 2025-10-12 15:06:46,653 | INFO     |  -- lfn=log.46676269._073787.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 11:07:47] 2025-10-12 15:06:46,653 | INFO     | stage-out finished correctly
[2025-10-12 11:07:47] 2025-10-12 15:06:46,713 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:07:47] 2025-10-12 15:06:47,343 | INFO     | time since job start (3911s) is within the limit (172800.0s)
[2025-10-12 11:07:47] 2025-10-12 15:06:47,827 | INFO     | monitor loop #291: job 0:6839660015 is in state 'finished'
[2025-10-12 11:07:47] 2025-10-12 15:06:47,827 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:07:47] 2025-10-12 15:06:48,089 | INFO     | job 6839660015 has state=finished
[2025-10-12 11:07:47] 2025-10-12 15:06:48,090 | INFO     | preparing for final server update for job 6839660015 in state='finished'
[2025-10-12 11:07:47] 2025-10-12 15:06:48,152 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-12 11:07:47] 2025-10-12 15:06:48,152 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:07:47] 2025-10-12 15:06:48,152 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:07:47] 2025-10-12 15:06:48,152 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:07:47] 2025-10-12 15:06:48,153 | INFO     | job 6839660015 has finished - writing final server update
[2025-10-12 11:07:47] 2025-10-12 15:06:48,153 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:07:47] 2025-10-12 15:06:48,154 | INFO     | executing command: lscpu
[2025-10-12 11:07:47] 2025-10-12 15:06:48,189 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:07:47] 2025-10-12 15:06:49,349 | INFO     | time since job start (3913s) is within the limit (172800.0s)
[2025-10-12 11:07:47] 2025-10-12 15:06:50,331 | INFO     | monitor loop #292: job 0:6839660015 is in state 'finished'
[2025-10-12 11:07:47] 2025-10-12 15:06:50,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:07:47] 2025-10-12 15:06:51,355 | INFO     | time since job start (3915s) is within the limit (172800.0s)
[2025-10-12 11:07:47] 2025-10-12 15:06:52,251 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 11:07:47] 2025-10-12 15:06:52,255 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2036.3520624999999
[2025-10-12 11:07:47] 2025-10-12 15:06:52,258 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839660015/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:07:47] 2025-10-12 15:06:52,259 | INFO     | extracted standard info from prmon json
[2025-10-12 11:07:47] 2025-10-12 15:06:52,259 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:07:47] 2025-10-12 15:06:52,259 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:07:47] 2025-10-12 15:06:52,260 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:07:47] 2025-10-12 15:06:52,260 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:07:47] 2025-10-12 15:06:52,261 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:07:47] 2025-10-12 15:06:52,262 | INFO     | sum of square deviations: 57407588.0
[2025-10-12 11:07:47] 2025-10-12 15:06:52,262 | INFO     | sum of deviations: -493877716.0
[2025-10-12 11:07:47] 2025-10-12 15:06:52,262 | INFO     | mean x: 1760279734.0
[2025-10-12 11:07:47] 2025-10-12 15:06:52,262 | INFO     | mean y: 2524907.7192982454
[2025-10-12 11:07:47] 2025-10-12 15:06:52,262 | INFO     | -- intersect: 15146218709.120733
[2025-10-12 11:07:47] 2025-10-12 15:06:52,262 | INFO     | intersect: 15146218709.120733
[2025-10-12 11:07:47] 2025-10-12 15:06:52,262 | INFO     | chi2: 0.003554640599556019
[2025-10-12 11:07:47] 2025-10-12 15:06:52,263 | INFO     | -- intersect: 15146218709.120733
[2025-10-12 11:07:47] 2025-10-12 15:06:52,263 | INFO     | current memory leak: -8.60 B/s (using 57 data points, chi2=0.00)
[2025-10-12 11:07:47] 2025-10-12 15:06:52,263 | INFO     | could have reported an average CPU frequency of 2260 MHz (6 samples)
[2025-10-12 11:07:47] 2025-10-12 15:06:52,263 | INFO     | ..............................
[2025-10-12 11:07:47] 2025-10-12 15:06:52,263 | INFO     | . Timing measurements:
[2025-10-12 11:07:47] 2025-10-12 15:06:52,263 | INFO     | . get job = 0 s
[2025-10-12 11:07:47] 2025-10-12 15:06:52,263 | INFO     | . initial setup = 2 s
[2025-10-12 11:07:47] 2025-10-12 15:06:52,264 | INFO     | . payload setup = 5 s
[2025-10-12 11:07:47] 2025-10-12 15:06:52,264 | INFO     | . stage-in = 0 s
[2025-10-12 11:07:47] 2025-10-12 15:06:52,264 | INFO     | . payload execution = 3883 s
[2025-10-12 11:07:47] 2025-10-12 15:06:52,264 | INFO     | . stage-out = 0 s
[2025-10-12 11:07:47] 2025-10-12 15:06:52,264 | INFO     | . log creation = 0 s
[2025-10-12 11:07:47] 2025-10-12 15:06:52,264 | INFO     | ..............................
[2025-10-12 11:07:47] 2025-10-12 15:06:52,335 | INFO     | 
[2025-10-12 11:07:47] 2025-10-12 15:06:52,335 | INFO     | job summary report
[2025-10-12 11:07:47] 2025-10-12 15:06:52,335 | INFO     | --------------------------------------------------
[2025-10-12 11:07:47] 2025-10-12 15:06:52,336 | INFO     | PanDA job id: 6839660015
[2025-10-12 11:07:47] 2025-10-12 15:06:52,336 | INFO     | task id: 46676269
[2025-10-12 11:07:47] 2025-10-12 15:06:52,336 | INFO     | errors: (none)
[2025-10-12 11:07:47] 2025-10-12 15:06:52,336 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:07:47] 2025-10-12 15:06:52,336 | INFO     | pilot state: finished 
[2025-10-12 11:07:47] 2025-10-12 15:06:52,336 | INFO     | transexitcode: 0
[2025-10-12 11:07:47] 2025-10-12 15:06:52,336 | INFO     | exeerrorcode: 0
[2025-10-12 11:07:47] 2025-10-12 15:06:52,336 | INFO     | exeerrordiag: 
[2025-10-12 11:07:47] 2025-10-12 15:06:52,336 | INFO     | exitcode: 0
[2025-10-12 11:07:47] 2025-10-12 15:06:52,337 | INFO     | exitmsg: OK
[2025-10-12 11:07:47] 2025-10-12 15:06:52,337 | INFO     | cpuconsumptiontime: 28689 s
[2025-10-12 11:07:47] 2025-10-12 15:06:52,337 | INFO     | nevents: 400
[2025-10-12 11:07:47] 2025-10-12 15:06:52,337 | INFO     | neventsw: 0
[2025-10-12 11:07:47] 2025-10-12 15:06:52,337 | INFO     | pid: 14359
[2025-10-12 11:07:47] 2025-10-12 15:06:52,337 | INFO     | pgrp: 14359
[2025-10-12 11:07:47] 2025-10-12 15:06:52,337 | INFO     | corecount: 8
[2025-10-12 11:07:47] 2025-10-12 15:06:52,337 | INFO     | event service: False
[2025-10-12 11:07:47] 2025-10-12 15:06:52,337 | INFO     | sizes: {0: 2348630, 1: 2348885, 5: 2349147, 12: 2349203, 3892: 2375126, 3893: 2375125, 3895: 2384363, 3900: 2384501}
[2025-10-12 11:07:47] 2025-10-12 15:06:52,338 | INFO     | --------------------------------------------------
[2025-10-12 11:07:47] 2025-10-12 15:06:52,338 | INFO     | 
[2025-10-12 11:07:47] 2025-10-12 15:06:52,338 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 11:07:47] 2025-10-12 15:06:52,358 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,358 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,358 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,359 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,359 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,359 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,359 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,359 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,360 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,360 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,360 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,360 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,360 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,360 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,360 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,361 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,361 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:07:47] 2025-10-12 15:06:52,361 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,361 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:07:47] 2025-10-12 15:06:52,361 | INFO     | job 6839660015 has completed (purged errors)
[2025-10-12 11:07:47] 2025-10-12 15:06:52,361 | INFO     | overall cleanup function is called
[2025-10-12 11:07:47] 2025-10-12 15:06:53,365 | INFO     | --- collectZombieJob: --- 10, [14359]
[2025-10-12 11:07:47] 2025-10-12 15:06:53,365 | INFO     | zombie collector waiting for pid 14359
[2025-10-12 11:07:47] 2025-10-12 15:06:53,366 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:07:47] 2025-10-12 15:06:53,366 | INFO     | collected zombie processes
[2025-10-12 11:07:47] 2025-10-12 15:06:53,366 | INFO     | will attempt to kill all subprocesses of pid=14359
[2025-10-12 11:07:47] 2025-10-12 15:06:53,476 | INFO     | process IDs to be killed: [14359] (in reverse order)
[2025-10-12 11:07:47] 2025-10-12 15:06:53,537 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:07:47] 2025-10-12 15:06:53,538 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:07:47] 2025-10-12 15:06:53,542 | INFO     | did not find any defunct processes belonging to 14359
[2025-10-12 11:07:47] 2025-10-12 15:06:53,545 | INFO     | did not find any defunct processes belonging to 14359
[2025-10-12 11:07:47] 2025-10-12 15:06:53,546 | INFO     | ready for new job
[2025-10-12 11:07:47] 2025-10-12 15:06:53,546 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:07:47] 2025-10-12 15:06:53,548 | INFO     | ***************************************
[2025-10-12 11:07:47] 2025-10-12 15:06:53,548 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:07:47] 2025-10-12 15:06:53,548 | INFO     | ***************************************
[2025-10-12 11:07:47] 2025-10-12 15:06:53,548 | INFO     | 
[2025-10-12 11:07:47] 2025-10-12 15:06:53,549 | INFO     | architecture information:
[2025-10-12 11:07:47] 2025-10-12 15:06:53,550 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:07:47] 2025-10-12 15:06:53,568 | INFO     | cat /etc/os-release:
[2025-10-12 11:07:47] NAME="CentOS Linux"
[2025-10-12 11:07:47] VERSION="7 (Core)"
[2025-10-12 11:07:47] ID="centos"
[2025-10-12 11:07:47] ID_LIKE="rhel fedora"
[2025-10-12 11:07:47] VERSION_ID="7"
[2025-10-12 11:07:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:07:47] ANSI_COLOR="0;31"
[2025-10-12 11:07:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:07:47] HOME_URL="https://www.centos.org/"
[2025-10-12 11:07:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:07:47] 
[2025-10-12 11:07:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:07:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:07:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:07:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:07:47] 
[2025-10-12 11:07:47] 2025-10-12 15:06:53,568 | INFO     | ***************************************
[2025-10-12 11:07:47] 2025-10-12 15:06:54,071 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:07:47] 2025-10-12 15:06:54,091 | INFO     | sufficient remaining disk space (32749125632 B)
[2025-10-12 11:07:47] 2025-10-12 15:06:54,092 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:07:47] 2025-10-12 15:06:54,092 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:07:47] 2025-10-12 15:06:54,092 | INFO     | update_server=False
[2025-10-12 11:07:47] 2025-10-12 15:06:54,092 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:07:47] 2025-10-12 15:06:54,093 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:07:47] 2025-10-12 15:06:54,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:07:47] 2025-10-12 15:06:54,094 | INFO     | aborting loop
[2025-10-12 11:07:47] 2025-10-12 15:06:54,716 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:07:47] 2025-10-12 15:06:54,974 | INFO     | all data control threads have been joined
[2025-10-12 11:07:47] 2025-10-12 15:06:55,096 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:55,097 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:55,098 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:55,167 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:55,174 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:55,177 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:55,360 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:55,517 | INFO     | all job control threads have been joined
[2025-10-12 11:07:47] 2025-10-12 15:06:55,598 | INFO     | all payload control threads have been joined
[2025-10-12 11:07:47] 2025-10-12 15:06:55,912 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:55,979 | INFO     | [data] control thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:56,172 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:56,345 | INFO     | [job] validate thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:56,523 | INFO     | [job] control thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:56,554 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:56,604 | INFO     | [payload] control thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:56,722 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:06:57,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:07:47] 2025-10-12 15:07:01,316 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:07:47] 2025-10-12 15:07:24,590 | INFO     | PID=7997 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 11:07:47] 2025-10-12 15:07:24,590 | INFO     | .. there are 2 such processes running
[2025-10-12 11:07:47] 2025-10-12 15:07:24,591 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:07:47] 2025-10-12 15:07:24,591 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:07:47] 2025-10-12 15:07:24,591 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:07:47] 2025-10-12 15:07:42,220 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:07:47] 2025-10-12 15:07:42,589 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155989509952)>', '<ExcThread(monitor, started 140155553822464)>']
[2025-10-12 11:07:47] 2025-10-12 15:07:42,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:07:47] 2025-10-12 15:07:42,678 | INFO     | [monitor] control thread has ended
[2025-10-12 11:07:47] 2025-10-12 15:07:47,614 | INFO     | all workflow threads have been joined
[2025-10-12 11:07:47] 2025-10-12 15:07:47,614 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:07:47] 2025-10-12 15:07:47,614 | INFO     | traces error code: 0
[2025-10-12 11:07:47] 2025-10-12 15:07:47,615 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:07:47] 2025-10-12 15:07:47,718 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:07:47] 2025-10-12 15:07:47,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:07:47] 2025-10-12 15:07:47,726 [wrapper] pilotpid: 7997
[2025-10-12 11:07:47] 2025-10-12 15:07:47,729 [wrapper] Pilot exit status: 0
[2025-10-12 11:07:47] 2025-10-12 15:07:47,740 [wrapper] pandaids: 6839660015
[2025-10-12 11:07:47] 2025-10-12 15:07:47,781 [wrapper] cleanup supervisor_pilot 24351 7998
[2025-10-12 11:07:47] 2025-10-12 15:07:47,785 [wrapper] Test setup, not cleaning
[2025-10-12 11:07:47] 2025-10-12 15:07:47,788 [wrapper] apfmon messages muted
[2025-10-12 11:07:47] 2025-10-12 15:07:47,791 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:07:47] 2025-10-12 15:07:47,794 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:07:47]  *** Error codes and diagnostics ***
[2025-10-12 11:07:47]     "exeErrorCode": 0,
[2025-10-12 11:07:47]     "exeErrorDiag": "",
[2025-10-12 11:07:47]     "pilotErrorCode": 0,
[2025-10-12 11:07:47]     "pilotErrorDiag": "",
[2025-10-12 11:07:47]  *** Listing of results directory ***
[2025-10-12 11:07:47] total 411032
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 02:54 pilot3.tar.gz
[2025-10-12 11:07:47] -rwx------ 1 boincer umatlas     36292 Oct 12 03:43 runpilot2-wrapper.sh
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 03:43 queuedata.json
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas       100 Oct 12 10:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:07:47] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 10:01 run_atlas
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas       105 Oct 12 10:01 job.xml
[2025-10-12 11:07:47] -rw-r--r-- 2 boincer umatlas 223396460 Oct 12 10:01 EVNT.46676267._003512.pool.root.1
[2025-10-12 11:07:47] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:01 start_atlas.sh
[2025-10-12 11:07:47] drwxrwx--x 2 boincer umatlas      4096 Oct 12 10:01 shared
[2025-10-12 11:07:47] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 10:01 input.tar.gz
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas         0 Oct 12 10:01 boinc_lockfile
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 10:01 pandaJob.out
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas    975528 Oct 12 10:01 agis_schedconf.cvmfs.json
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas   1560580 Oct 12 10:01 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:07:47] drwx------ 5 boincer umatlas      4096 Oct 12 10:01 pilot3
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas      6135 Oct 12 11:01 init_data.xml
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas 191757375 Oct 12 11:06 HITS.46676269._073787.pool.root.1
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas       529 Oct 12 11:06 boinc_task_state.xml
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas      1044 Oct 12 11:06 memory_monitor_summary.json
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas    330495 Oct 12 11:06 log.46676269._073787.job.log.tgz.1
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas      7835 Oct 12 11:06 heartbeat.json
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas        95 Oct 12 11:07 pilot_heartbeat.json
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas        27 Oct 12 11:07 wrapper_checkpoint.txt
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 11:07 boinc_mmap_file
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas      4820 Oct 12 11:07 pilotlog.txt
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas    587406 Oct 12 11:07 log.46676269._073787.job.log.1
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas       357 Oct 12 11:07 output.list
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas       620 Oct 12 11:07 runtime_log
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas    942080 Oct 12 11:07 result.tar.gz
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 11:07 runtime_log.err
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas       657 Oct 12 11:07 AGcNDmNv5R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmcTTMDmfJV2Dm.diag
[2025-10-12 11:07:47] -rw-r--r-- 1 boincer umatlas     21760 Oct 12 11:07 stderr.txt
[2025-10-12 11:07:47] HITS file was successfully produced:
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas 191757375 Oct 12 11:06 shared/HITS.pool.root.1
[2025-10-12 11:07:47]  *** Contents of shared directory: ***
[2025-10-12 11:07:47] total 406928
[2025-10-12 11:07:47] -rw-r--r-- 2 boincer umatlas 223396460 Oct 12 10:01 ATLAS.root_0
[2025-10-12 11:07:47] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 10:01 start_atlas.sh
[2025-10-12 11:07:47] -rw-r--r-- 2 boincer umatlas    569677 Oct 12 10:01 input.tar.gz
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas 191757375 Oct 12 11:06 HITS.pool.root.1
[2025-10-12 11:07:47] -rw------- 1 boincer umatlas    942080 Oct 12 11:07 result.tar.gz
11:07:49 (4305): run_atlas exited; CPU time 28681.205027
11:07:49 (4305): called boinc_finish(0)

</stderr_txt>
]]>

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