Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
14:57:24 (951245): wrapper (7.7.26015): starting
14:57:24 (951245): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 14:57:24] Arguments: --nthreads 12
[2025-10-12 14:57:24] Threads: 12
[2025-10-12 14:57:24] Checking for CVMFS
[2025-10-12 14:57:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:57:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:57:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:57:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:57:25] 2.11.0.0 3299214 3211 86676 151623 2 188 5388595 6144000 14749 130560 0 62990367 100.000 114106 188 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 14:57:25] CVMFS is ok
[2025-10-12 14:57:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:57:25] Checking for apptainer binary...
[2025-10-12 14:57:25] apptainer is not installed, using version from CVMFS
[2025-10-12 14:57:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:57:25] radiat0r
[2025-10-12 14:57:25] apptainer works
[2025-10-12 14:57:25] Set ATHENA_PROC_NUMBER=12
[2025-10-12 14:57:25] Set ATHENA_CORE_NUMBER=12
[2025-10-12 14:57:25] Starting ATLAS job with PandaID=6839591660
[2025-10-12 14:57:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:51:54]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:51:54]  workdir=None
[2025-10-12 15:51:54] ]
[2025-10-12 15:51:54] 2025-10-12 15:50:59,247 | INFO     | transferring file log.46676269._072924.job.log.tgz.1 from /var/lib/boinc/slots/15/PanDA_Pilot-6839591660/log.46676269._072924.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-12 15:51:54] 2025-10-12 15:50:59,247 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/15/PanDA_Pilot-6839591660/log.46676269._072924.job.log.tgz.1 /var/lib/boinc/slots/15/log.46676269._072924.j
[2025-10-12 15:51:54] 2025-10-12 15:50:59,276 | INFO     | adding to output.list: log.46676269._072924.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0b/34/log.46676269._072924.job.log.tg
[2025-10-12 15:51:54] 2025-10-12 15:50:59,278 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 15:51:54] 2025-10-12 15:50:59,278 | INFO     | summary of transferred files:
[2025-10-12 15:51:54] 2025-10-12 15:50:59,279 | INFO     |  -- lfn=log.46676269._072924.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 15:51:54] 2025-10-12 15:50:59,279 | INFO     | stage-out finished correctly
[2025-10-12 15:51:54] 2025-10-12 15:50:59,965 | WARNING  | process 966632 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 15:51:54] 2025-10-12 15:50:59,966 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6839591660/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:51:54] 2025-10-12 15:51:00,787 | INFO     | PID=958450 has CPU usage=25.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 15:51:54] 2025-10-12 15:51:00,787 | INFO     | .. there are 17 such processes running
[2025-10-12 15:51:54] 2025-10-12 15:51:01,248 | INFO     | number of running child processes to parent process 966632: 1
[2025-10-12 15:51:54] 2025-10-12 15:51:01,248 | INFO     | maximum number of monitored processes: 6
[2025-10-12 15:51:54] 2025-10-12 15:51:01,788 | INFO     | time since job start (3198s) is within the limit (172800.0s)
[2025-10-12 15:51:54] 2025-10-12 15:51:02,396 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 15:51:54] 2025-10-12 15:51:02,501 | INFO     | job 6839591660 has state=finished
[2025-10-12 15:51:54] 2025-10-12 15:51:02,501 | INFO     | preparing for final server update for job 6839591660 in state='finished'
[2025-10-12 15:51:54] 2025-10-12 15:51:02,502 | INFO     | this job has now completed (state=finished)
[2025-10-12 15:51:54] 2025-10-12 15:51:02,502 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 15:51:54] 2025-10-12 15:51:02,502 | INFO     | log transfer has been attempted: DONE
[2025-10-12 15:51:54] 2025-10-12 15:51:02,503 | INFO     | job 6839591660 has finished - writing final server update
[2025-10-12 15:51:54] 2025-10-12 15:51:02,503 | INFO     | total number of processed events: 400 (read)
[2025-10-12 15:51:54] 2025-10-12 15:51:02,506 | INFO     | executing command: lscpu
[2025-10-12 15:51:54] 2025-10-12 15:51:02,704 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 15:51:54] 2025-10-12 15:51:03,752 | INFO     | monitor loop #223: job 0:6839591660 is in state 'finished'
[2025-10-12 15:51:54] 2025-10-12 15:51:03,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:51:54] 2025-10-12 15:51:03,794 | INFO     | time since job start (3200s) is within the limit (172800.0s)
[2025-10-12 15:51:54] 2025-10-12 15:51:05,799 | INFO     | time since job start (3202s) is within the limit (172800.0s)
[2025-10-12 15:51:54] 2025-10-12 15:51:06,255 | INFO     | monitor loop #224: job 0:6839591660 is in state 'finished'
[2025-10-12 15:51:54] 2025-10-12 15:51:06,255 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:51:54] 2025-10-12 15:51:07,803 | INFO     | time since job start (3204s) is within the limit (172800.0s)
[2025-10-12 15:51:54] 2025-10-12 15:51:08,759 | INFO     | monitor loop #225: job 0:6839591660 is in state 'finished'
[2025-10-12 15:51:54] 2025-10-12 15:51:08,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 15:51:54] 2025-10-12 15:51:09,490 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 15:51:54] 2025-10-12 15:51:09,555 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2360.822804687501
[2025-10-12 15:51:54] 2025-10-12 15:51:09,628 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6839591660/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:51:54] 2025-10-12 15:51:09,629 | INFO     | extracted standard info from prmon json
[2025-10-12 15:51:54] 2025-10-12 15:51:09,629 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:51:54] 2025-10-12 15:51:09,629 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:51:54] 2025-10-12 15:51:09,630 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:51:54] 2025-10-12 15:51:09,630 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:51:54] 2025-10-12 15:51:09,631 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:51:54] 2025-10-12 15:51:09,632 | INFO     | sum of square deviations: 28242390.0
[2025-10-12 15:51:54] 2025-10-12 15:51:09,632 | INFO     | sum of deviations: 395596712.0
[2025-10-12 15:51:54] 2025-10-12 15:51:09,632 | INFO     | mean x: 1760282745.0
[2025-10-12 15:51:54] 2025-10-12 15:51:09,632 | INFO     | mean y: 2661633.644444444
[2025-10-12 15:51:54] 2025-10-12 15:51:09,632 | INFO     | -- intersect: -24653965022.680832
[2025-10-12 15:51:54] 2025-10-12 15:51:09,632 | INFO     | intersect: -24653965022.680832
[2025-10-12 15:51:54] 2025-10-12 15:51:09,632 | INFO     | chi2: 0.0007359556653897749
[2025-10-12 15:51:54] 2025-10-12 15:51:09,633 | INFO     | -- intersect: -24653965022.680832
[2025-10-12 15:51:54] 2025-10-12 15:51:09,633 | INFO     | current memory leak: 14.01 B/s (using 45 data points, chi2=0.00)
[2025-10-12 15:51:54] 2025-10-12 15:51:09,633 | INFO     | could have reported an average CPU frequency of 2360 MHz (5 samples)
[2025-10-12 15:51:54] 2025-10-12 15:51:09,633 | INFO     | ..............................
[2025-10-12 15:51:54] 2025-10-12 15:51:09,633 | INFO     | . Timing measurements:
[2025-10-12 15:51:54] 2025-10-12 15:51:09,633 | INFO     | . get job = 0 s
[2025-10-12 15:51:54] 2025-10-12 15:51:09,633 | INFO     | . initial setup = 3 s
[2025-10-12 15:51:54] 2025-10-12 15:51:09,634 | INFO     | . payload setup = 8 s
[2025-10-12 15:51:54] 2025-10-12 15:51:09,634 | INFO     | . stage-in = 0 s
[2025-10-12 15:51:54] 2025-10-12 15:51:09,634 | INFO     | . payload execution = 3162 s
[2025-10-12 15:51:54] 2025-10-12 15:51:09,634 | INFO     | . stage-out = 1 s
[2025-10-12 15:51:54] 2025-10-12 15:51:09,634 | INFO     | . log creation = 0 s
[2025-10-12 15:51:54] 2025-10-12 15:51:09,634 | INFO     | ..............................
[2025-10-12 15:51:54] 2025-10-12 15:51:09,776 | INFO     | 
[2025-10-12 15:51:54] 2025-10-12 15:51:09,776 | INFO     | job summary report
[2025-10-12 15:51:54] 2025-10-12 15:51:09,776 | INFO     | --------------------------------------------------
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | PanDA job id: 6839591660
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | task id: 46676269
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | errors: (none)
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | pilot state: finished 
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | transexitcode: 0
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | exeerrorcode: 0
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | exeerrordiag: 
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | exitcode: 0
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | exitmsg: OK
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | cpuconsumptiontime: 33251 s
[2025-10-12 15:51:54] 2025-10-12 15:51:09,777 | INFO     | nevents: 400
[2025-10-12 15:51:54] 2025-10-12 15:51:09,778 | INFO     | neventsw: 0
[2025-10-12 15:51:54] 2025-10-12 15:51:09,778 | INFO     | pid: 966632
[2025-10-12 15:51:54] 2025-10-12 15:51:09,778 | INFO     | pgrp: 966632
[2025-10-12 15:51:54] 2025-10-12 15:51:09,778 | INFO     | corecount: 12
[2025-10-12 15:51:54] 2025-10-12 15:51:09,778 | INFO     | event service: False
[2025-10-12 15:51:54] 2025-10-12 15:51:09,778 | INFO     | sizes: {0: 2348857, 7: 2349119, 11: 2349147, 3175: 2374717, 3178: 2383717, 3181: 2383773, 3188: 2384127}
[2025-10-12 15:51:54] 2025-10-12 15:51:09,778 | INFO     | --------------------------------------------------
[2025-10-12 15:51:54] 2025-10-12 15:51:09,778 | INFO     | 
[2025-10-12 15:51:54] 2025-10-12 15:51:09,778 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-10-12 15:51:54] 2025-10-12 15:51:09,807 | INFO     | time since job start (3206s) is within the limit (172800.0s)
[2025-10-12 15:51:54] 2025-10-12 15:51:09,810 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,810 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,810 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,810 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,810 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,810 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,810 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,811 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,811 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,811 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,811 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,811 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,811 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,811 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,811 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,811 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,812 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,812 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:51:54] 2025-10-12 15:51:09,812 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,812 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:51:54] 2025-10-12 15:51:09,812 | INFO     | job 6839591660 has completed (purged errors)
[2025-10-12 15:51:54] 2025-10-12 15:51:09,812 | INFO     | overall cleanup function is called
[2025-10-12 15:51:54] 2025-10-12 15:51:10,822 | INFO     | --- collectZombieJob: --- 10, [966632]
[2025-10-12 15:51:54] 2025-10-12 15:51:10,823 | INFO     | zombie collector waiting for pid 966632
[2025-10-12 15:51:54] 2025-10-12 15:51:10,823 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:51:54] 2025-10-12 15:51:10,823 | INFO     | collected zombie processes
[2025-10-12 15:51:54] 2025-10-12 15:51:10,823 | INFO     | will attempt to kill all subprocesses of pid=966632
[2025-10-12 15:51:54] 2025-10-12 15:51:11,650 | INFO     | process IDs to be killed: [966632] (in reverse order)
[2025-10-12 15:51:54] 2025-10-12 15:51:11,923 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:51:54] 2025-10-12 15:51:11,923 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:51:54] 2025-10-12 15:51:11,953 | INFO     | did not find any defunct processes belonging to 966632
[2025-10-12 15:51:54] 2025-10-12 15:51:11,981 | INFO     | did not find any defunct processes belonging to 966632
[2025-10-12 15:51:54] 2025-10-12 15:51:11,981 | INFO     | ready for new job
[2025-10-12 15:51:54] 2025-10-12 15:51:11,981 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:51:54] 2025-10-12 15:51:11,984 | INFO     | ***************************************
[2025-10-12 15:51:54] 2025-10-12 15:51:11,984 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:51:54] 2025-10-12 15:51:11,984 | INFO     | ***************************************
[2025-10-12 15:51:54] 2025-10-12 15:51:11,984 | INFO     | 
[2025-10-12 15:51:54] 2025-10-12 15:51:12,026 | INFO     | architecture information:
[2025-10-12 15:51:54] 2025-10-12 15:51:12,026 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:51:54] 2025-10-12 15:51:12,051 | INFO     | cat /etc/os-release:
[2025-10-12 15:51:54] NAME="CentOS Linux"
[2025-10-12 15:51:54] VERSION="7 (Core)"
[2025-10-12 15:51:54] ID="centos"
[2025-10-12 15:51:54] ID_LIKE="rhel fedora"
[2025-10-12 15:51:54] VERSION_ID="7"
[2025-10-12 15:51:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:51:54] ANSI_COLOR="0;31"
[2025-10-12 15:51:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:51:54] HOME_URL="https://www.centos.org/"
[2025-10-12 15:51:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:51:54] 
[2025-10-12 15:51:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:51:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:51:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:51:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:51:54] 
[2025-10-12 15:51:54] 2025-10-12 15:51:12,051 | INFO     | ***************************************
[2025-10-12 15:51:54] 2025-10-12 15:51:12,554 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-10-12 15:51:54] 2025-10-12 15:51:12,583 | INFO     | sufficient remaining disk space (1725066903552 B)
[2025-10-12 15:51:54] 2025-10-12 15:51:12,583 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:51:54] 2025-10-12 15:51:12,583 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:51:54] 2025-10-12 15:51:12,584 | INFO     | update_server=False
[2025-10-12 15:51:54] 2025-10-12 15:51:12,584 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:51:54] 2025-10-12 15:51:12,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:51:54] 2025-10-12 15:51:12,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:51:54] 2025-10-12 15:51:12,585 | INFO     | aborting loop
[2025-10-12 15:51:54] 2025-10-12 15:51:12,637 | INFO     | all job control threads have been joined
[2025-10-12 15:51:54] 2025-10-12 15:51:13,013 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:51:54] 2025-10-12 15:51:13,566 | INFO     | all payload control threads have been joined
[2025-10-12 15:51:54] 2025-10-12 15:51:13,587 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:13,591 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:13,619 | INFO     | all data control threads have been joined
[2025-10-12 15:51:54] 2025-10-12 15:51:13,642 | INFO     | [job] control thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:13,684 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:13,980 | INFO     | [job] validate thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:14,016 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:14,145 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:14,567 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:14,572 | INFO     | [payload] control thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:14,591 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:14,610 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:14,622 | INFO     | [data] control thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:14,742 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:51:54] 2025-10-12 15:51:14,831 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:15,022 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:15,746 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:17,022 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:51:54] 2025-10-12 15:51:43,820 | INFO     | PID=958450 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 15:51:54] 2025-10-12 15:51:43,821 | INFO     | .. there are 17 such processes running
[2025-10-12 15:51:54] 2025-10-12 15:51:43,822 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:51:54] 2025-10-12 15:51:43,822 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:51:54] 2025-10-12 15:51:43,822 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:51:54] 2025-10-12 15:51:47,738 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:51:54] 2025-10-12 15:51:49,438 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956128995136)>', '<ExcThread(monitor, started 139955326150400)>']
[2025-10-12 15:51:54] 2025-10-12 15:51:49,841 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:51:54] 2025-10-12 15:51:49,842 | INFO     | [monitor] control thread has ended
[2025-10-12 15:51:54] 2025-10-12 15:51:54,462 | INFO     | all workflow threads have been joined
[2025-10-12 15:51:54] 2025-10-12 15:51:54,463 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:51:54] 2025-10-12 15:51:54,463 | INFO     | traces error code: 0
[2025-10-12 15:51:54] 2025-10-12 15:51:54,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:51:54] 2025-10-12 15:51:54,630 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:51:54] 2025-10-12 15:51:54,634 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:51:54] 2025-10-12 15:51:54,637 [wrapper] pilotpid: 958450
[2025-10-12 15:51:54] 2025-10-12 15:51:54,640 [wrapper] Pilot exit status: 0
[2025-10-12 15:51:54] 2025-10-12 15:51:54,655 [wrapper] pandaids: 6839591660
[2025-10-12 15:51:54] 2025-10-12 15:51:54,830 [wrapper] cleanup supervisor_pilot 1361923 958451
[2025-10-12 15:51:54] 2025-10-12 15:51:54,834 [wrapper] Test setup, not cleaning
[2025-10-12 15:51:54] 2025-10-12 15:51:54,836 [wrapper] apfmon messages muted
[2025-10-12 15:51:54] 2025-10-12 15:51:54,839 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:51:54] 2025-10-12 15:51:54,842 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:51:54]  *** Error codes and diagnostics ***
[2025-10-12 15:51:54]     "exeErrorCode": 0,
[2025-10-12 15:51:54]     "exeErrorDiag": "",
[2025-10-12 15:51:54]     "pilotErrorCode": 0,
[2025-10-12 15:51:54]     "pilotErrorDiag": "",
[2025-10-12 15:51:54]  *** Listing of results directory ***
[2025-10-12 15:51:54] total 416876
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:14 pilot3.tar.gz
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc      5112 Oct 12 06:41 queuedata.json
[2025-10-12 15:51:54] -rwx------ 1 boinc boinc     36292 Oct 12 06:41 runpilot2-wrapper.sh
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc       100 Oct 12 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:51:54] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 14:57 run_atlas
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc       105 Oct 12 14:57 job.xml
[2025-10-12 15:51:54] -rw-r--r-- 2 boinc boinc 220616820 Oct 12 14:57 EVNT.46676267._004520.pool.root.1
[2025-10-12 15:51:54] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:57 start_atlas.sh
[2025-10-12 15:51:54] drwxrwx--x 2 boinc boinc      4096 Oct 12 14:57 shared
[2025-10-12 15:51:54] -rw-r--r-- 2 boinc boinc    569679 Oct 12 14:57 input.tar.gz
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc      9396 Oct 12 14:57 init_data.xml
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:57 boinc_setup_complete
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:57 boinc_lockfile
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc      2549 Oct 12 14:57 pandaJob.out
[2025-10-12 15:51:54] -rw------- 1 boinc boinc    975528 Oct 12 14:57 agis_schedconf.cvmfs.json
[2025-10-12 15:51:54] -rw------- 1 boinc boinc   1560580 Oct 12 14:57 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:51:54] drwx------ 5 boinc boinc      4096 Oct 12 14:57 pilot3
[2025-10-12 15:51:54] -rw------- 1 boinc boinc 200690425 Oct 12 15:50 HITS.46676269._072924.pool.root.1
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc       529 Oct 12 15:50 boinc_task_state.xml
[2025-10-12 15:51:54] -rw------- 1 boinc boinc      1042 Oct 12 15:50 memory_monitor_summary.json
[2025-10-12 15:51:54] -rw------- 1 boinc boinc    357977 Oct 12 15:50 log.46676269._072924.job.log.tgz.1
[2025-10-12 15:51:54] -rw------- 1 boinc boinc      7743 Oct 12 15:51 heartbeat.json
[2025-10-12 15:51:54] -rw------- 1 boinc boinc        95 Oct 12 15:51 pilot_heartbeat.json
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc      8192 Oct 12 15:51 boinc_mmap_file
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc        27 Oct 12 15:51 wrapper_checkpoint.txt
[2025-10-12 15:51:54] -rw------- 1 boinc boinc      4826 Oct 12 15:51 pilotlog.txt
[2025-10-12 15:51:54] -rw------- 1 boinc boinc    473885 Oct 12 15:51 log.46676269._072924.job.log.1
[2025-10-12 15:51:54] -rw------- 1 boinc boinc       357 Oct 12 15:51 output.list
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc       620 Oct 12 15:51 runtime_log
[2025-10-12 15:51:54] -rw------- 1 boinc boinc    849920 Oct 12 15:51 result.tar.gz
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc      8672 Oct 12 15:51 runtime_log.err
[2025-10-12 15:51:54] -rw------- 1 boinc boinc       643 Oct 12 15:51 GTVKDmDx4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmSuiNDmuh6jmn.diag
[2025-10-12 15:51:54] -rw-r--r-- 1 boinc boinc     22077 Oct 12 15:51 stderr.txt
[2025-10-12 15:51:54] HITS file was successfully produced:
[2025-10-12 15:51:54] -rw------- 1 boinc boinc 200690425 Oct 12 15:50 shared/HITS.pool.root.1
[2025-10-12 15:51:54]  *** Contents of shared directory: ***
[2025-10-12 15:51:55] total 412852
[2025-10-12 15:51:55] -rw-r--r-- 2 boinc boinc 220616820 Oct 12 14:57 ATLAS.root_0
[2025-10-12 15:51:55] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:57 start_atlas.sh
[2025-10-12 15:51:55] -rw-r--r-- 2 boinc boinc    569679 Oct 12 14:57 input.tar.gz
[2025-10-12 15:51:55] -rw------- 1 boinc boinc 200690425 Oct 12 15:50 HITS.pool.root.1
[2025-10-12 15:51:55] -rw------- 1 boinc boinc    849920 Oct 12 15:51 result.tar.gz
15:51:56 (951245): run_atlas exited; CPU time 33432.255959
15:51:56 (951245): called boinc_finish(0)

</stderr_txt>
]]>

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