Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:05:49 (212702): wrapper (7.7.26015): starting
07:05:49 (212702): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 07:05:49] Arguments: --nthreads 12
[2025-10-12 07:05:49] Threads: 12
[2025-10-12 07:05:49] Checking for CVMFS
[2025-10-12 07:05:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 07:05:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 07:05:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 07:05:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 07:05:51] 2.11.5.0 2471 31222 207680 151621 3 383 30252279 45568000 20048 130560 0 309067058 99.857 134895429 25435 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 07:05:51] CVMFS is ok
[2025-10-12 07:05:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 07:05:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 07:05:51] Further information can be found at the LHC@home message board.
[2025-10-12 07:05:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 07:05:51] Checking for apptainer binary...
[2025-10-12 07:05:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 07:05:51] Running /usr/bin/apptainer --version
[2025-10-12 07:05:51] apptainer version 1.4.1-1.el9
[2025-10-12 07:05:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 07:05:52] wns0035.triumf.lcg
[2025-10-12 07:05:52] apptainer works
[2025-10-12 07:05:52] Set ATHENA_PROC_NUMBER=12
[2025-10-12 07:05:52] Set ATHENA_CORE_NUMBER=12
[2025-10-12 07:05:52] Starting ATLAS job with PandaID=6839865821
[2025-10-12 07:05:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 07:11:38]  *** The last 200 lines of the pilot log: ***
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | WARNING  | wrong length of table data, x=[1760278076.0], y=[1979.0] (must be same and length>=4)
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | could have reported an average CPU frequency of 2578 MHz (4 samples)
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | ..............................
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . Timing measurements:
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . get job = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . initial setup = 3 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . payload setup = 23 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . stage-in = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . payload execution = 65 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . stage-out = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . log creation = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,706 | INFO     | ..............................
[2025-10-12 07:11:38] 2025-10-12 14:11:00,706 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 07:11:38] 2025-10-12 14:11:00,706 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839865821/pilotlog.txt
[2025-10-12 07:11:38] 2025-10-12 14:11:00,761 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 07:11:38] - Log from pilotlog.txt -
[2025-10-12 07:11:38] 2025-10-12 14:11:00,691 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839865821/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | INFO     | extracted standard info from prmon json
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | WARNING  | wrong length of table data, x=[1760278076.0], y=[1979.0] (must be same and length>=4)
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | could have reported an average CPU frequency of 2578 MHz (4 samples)
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | ..............................
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . Timing measurements:
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . get job = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . initial setup = 3 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . payload setup = 23 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . stage-in = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . payload execution = 65 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . stage-out = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . log creation = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,706 | INFO     | ..............................
[2025-10-12 07:11:38] 2025-10-12 14:11:00,706 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 07:11:38] 2025-10-12 14:11:00,706 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839865821/pilotlog.txt
[2025-10-12 07:11:38] 2025-10-12 14:11:00,762 | WARNING  | 
[2025-10-12 07:11:38] [begin log extracts]
[2025-10-12 07:11:38] - Log from pilotlog.txt -
[2025-10-12 07:11:38] 2025-10-12 14:11:00,691 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839865821/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | INFO     | extracted standard info from prmon json
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 07:11:38] 2025-10-12 14:11:00,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | WARNING  | wrong length of table data, x=[1760278076.0], y=[1979.0] (must be same and length>=4)
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | could have reported an average CPU frequency of 2578 MHz (4 samples)
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | ..............................
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . Timing measurements:
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . get job = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . initial setup = 3 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . payload setup = 23 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . stage-in = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . payload execution = 65 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . stage-out = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,705 | INFO     | . log creation = 0 s
[2025-10-12 07:11:38] 2025-10-12 14:11:00,706 | INFO     | ..............................
[2025-10-12 07:11:38] 2025-10-12 14:11:00,706 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 07:11:38] 2025-10-12 14:11:00,706 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839865821/pilotlog.txt
[2025-10-12 07:11:38] [end log extracts]
[2025-10-12 07:11:38] 2025-10-12 14:11:00,762 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 07:11:38] 2025-10-12 14:11:00,762 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 07:11:38] 2025-10-12 14:11:01,241 | INFO     | 
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | job summary report
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | --------------------------------------------------
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | PanDA job id: 6839865821
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | task id: 46676269
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 07:08:31,047 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | pilot state: failed 
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | transexitcode: 65
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | exeerrorcode: 65
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | exitcode: 65
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | cpuconsumptiontime: 19 s
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | nevents: 0
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | neventsw: 0
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | pid: 223311
[2025-10-12 07:11:38] 2025-10-12 14:11:01,242 | INFO     | pgrp: 223311
[2025-10-12 07:11:38] 2025-10-12 14:11:01,243 | INFO     | corecount: 12
[2025-10-12 07:11:38] 2025-10-12 14:11:01,243 | INFO     | event service: False
[2025-10-12 07:11:38] 2025-10-12 14:11:01,243 | INFO     | sizes: {0: 2348804, 1: 2348804, 11: 2348832, 19: 2349122, 22: 2349150, 93: 2372483, 94: 2376775, 98: 2376803, 233: 2376969}
[2025-10-12 07:11:38] 2025-10-12 14:11:01,243 | INFO     | --------------------------------------------------
[2025-10-12 07:11:38] 2025-10-12 14:11:01,243 | INFO     | 
[2025-10-12 07:11:38] 2025-10-12 14:11:01,243 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 07:11:38] 2025-10-12 14:11:01,282 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,282 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,282 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,282 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 07:11:38] 2025-10-12 14:11:01,283 | INFO     | job 6839865821 has completed (purged errors)
[2025-10-12 07:11:38] 2025-10-12 14:11:01,284 | INFO     | overall cleanup function is called
[2025-10-12 07:11:38] 2025-10-12 14:11:02,301 | INFO     | --- collectZombieJob: --- 10, [223311]
[2025-10-12 07:11:38] 2025-10-12 14:11:02,301 | INFO     | zombie collector waiting for pid 223311
[2025-10-12 07:11:38] 2025-10-12 14:11:02,302 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 07:11:38] 2025-10-12 14:11:02,302 | INFO     | collected zombie processes
[2025-10-12 07:11:38] 2025-10-12 14:11:02,302 | INFO     | will attempt to kill all subprocesses of pid=223311
[2025-10-12 07:11:38] 2025-10-12 14:11:02,596 | INFO     | process IDs to be killed: [223311] (in reverse order)
[2025-10-12 07:11:38] 2025-10-12 14:11:02,681 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 07:11:38] 2025-10-12 14:11:02,681 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 07:11:38] 2025-10-12 14:11:02,693 | INFO     | did not find any defunct processes belonging to 223311
[2025-10-12 07:11:38] 2025-10-12 14:11:02,711 | INFO     | did not find any defunct processes belonging to 223311
[2025-10-12 07:11:38] 2025-10-12 14:11:02,712 | INFO     | ready for new job
[2025-10-12 07:11:38] 2025-10-12 14:11:02,712 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 07:11:38] 2025-10-12 14:11:02,714 | INFO     | ***************************************
[2025-10-12 07:11:38] 2025-10-12 14:11:02,714 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 07:11:38] 2025-10-12 14:11:02,714 | INFO     | ***************************************
[2025-10-12 07:11:38] 2025-10-12 14:11:02,715 | INFO     | 
[2025-10-12 07:11:38] 2025-10-12 14:11:02,716 | INFO     | architecture information:
[2025-10-12 07:11:38] 2025-10-12 14:11:02,720 | INFO     | executing command: cat /etc/os-release
[2025-10-12 07:11:38] 2025-10-12 14:11:02,744 | INFO     | cat /etc/os-release:
[2025-10-12 07:11:38] NAME="CentOS Linux"
[2025-10-12 07:11:38] VERSION="7 (Core)"
[2025-10-12 07:11:38] ID="centos"
[2025-10-12 07:11:38] ID_LIKE="rhel fedora"
[2025-10-12 07:11:38] VERSION_ID="7"
[2025-10-12 07:11:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 07:11:38] ANSI_COLOR="0;31"
[2025-10-12 07:11:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 07:11:38] HOME_URL="https://www.centos.org/"
[2025-10-12 07:11:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 07:11:38] 
[2025-10-12 07:11:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 07:11:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 07:11:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 07:11:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 07:11:38] 
[2025-10-12 07:11:38] 2025-10-12 14:11:02,745 | INFO     | ***************************************
[2025-10-12 07:11:38] 2025-10-12 14:11:03,248 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 07:11:38] 2025-10-12 14:11:03,328 | INFO     | sufficient remaining disk space (1738540056576 B)
[2025-10-12 07:11:38] 2025-10-12 14:11:03,328 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 07:11:38] 2025-10-12 14:11:03,328 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 07:11:38] 2025-10-12 14:11:03,328 | INFO     | update_server=False
[2025-10-12 07:11:38] 2025-10-12 14:11:03,328 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 07:11:38] 2025-10-12 14:11:03,328 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 07:11:38] 2025-10-12 14:11:03,329 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 07:11:38] 2025-10-12 14:11:03,396 | INFO     | all job control threads have been joined
[2025-10-12 07:11:38] 2025-10-12 14:11:03,405 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:11:38] 2025-10-12 14:11:03,406 | INFO     | aborting loop
[2025-10-12 07:11:38] 2025-10-12 14:11:04,187 | INFO     | all data control threads have been joined
[2025-10-12 07:11:38] 2025-10-12 14:11:04,333 | INFO     | [job] retrieve thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:04,344 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:04,402 | INFO     | [job] control thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:04,411 | INFO     | [job] job monitor thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:04,479 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:04,501 | INFO     | [data] copytool_in thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:04,513 | INFO     | all payload control threads have been joined
[2025-10-12 07:11:38] 2025-10-12 14:11:04,831 | INFO     | [payload] failed_post thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:04,914 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:05,193 | INFO     | [data] control thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:05,311 | INFO     | [payload] validate_post thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:05,334 | INFO     | [data] copytool_out thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:05,401 | INFO     | [job] validate thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:05,519 | INFO     | [payload] control thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:05,657 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:05,981 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 07:11:38] 2025-10-12 14:11:06,987 | INFO     | [job] queue monitor thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:07,336 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 07:11:38] 2025-10-12 14:11:32,662 | INFO     | [monitor] cgroup control has ended
[2025-10-12 07:11:38] 2025-10-12 14:11:32,802 | INFO     | PID=216468 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 07:11:38] 2025-10-12 14:11:32,802 | INFO     | .. there are 35 such processes running
[2025-10-12 07:11:38] 2025-10-12 14:11:32,802 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 07:11:38] 2025-10-12 14:11:32,803 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 07:11:38] 2025-10-12 14:11:32,803 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 07:11:38] 2025-10-12 14:11:32,966 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140377647306560)>', '<ExcThread(monitor, started 140376945964800)>']
[2025-10-12 07:11:38] 2025-10-12 14:11:33,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 07:11:38] 2025-10-12 14:11:33,809 | INFO     | [monitor] control thread has ended
[2025-10-12 07:11:38] 2025-10-12 14:11:37,991 | INFO     | all workflow threads have been joined
[2025-10-12 07:11:38] 2025-10-12 14:11:37,991 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 07:11:38] 2025-10-12 14:11:37,992 | INFO     | traces error code: 0
[2025-10-12 07:11:38] 2025-10-12 14:11:37,992 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 07:11:38] 2025-10-12 14:11:38,415 [wrapper] ==== pilot stdout END ====
[2025-10-12 07:11:38] 2025-10-12 14:11:38,438 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 07:11:38] 2025-10-12 14:11:38,454 [wrapper] pilotpid: 216468
[2025-10-12 07:11:38] 2025-10-12 14:11:38,477 [wrapper] Pilot exit status: 0
[2025-10-12 07:11:38] 2025-10-12 14:11:38,518 [wrapper] pandaids: 6839865821
[2025-10-12 07:11:38] 2025-10-12 14:11:38,593 [wrapper] cleanup supervisor_pilot  216474 216469
[2025-10-12 07:11:38] 2025-10-12 14:11:38,613 [wrapper] Test setup, not cleaning
[2025-10-12 07:11:38] 2025-10-12 14:11:38,620 [wrapper] apfmon messages muted
[2025-10-12 07:11:38] 2025-10-12 14:11:38,622 [wrapper] ==== wrapper stdout END ====
[2025-10-12 07:11:38] 2025-10-12 14:11:38,624 [wrapper] ==== wrapper stderr END ====
[2025-10-12 07:11:38]  *** Error codes and diagnostics ***
[2025-10-12 07:11:38]     "exeErrorCode": 65,
[2025-10-12 07:11:38]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 07:11:38]     "pilotErrorCode": 1305,
[2025-10-12 07:11:38]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 07:11:38]  *** Listing of results directory ***
[2025-10-12 07:11:38] total 218976
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc    557409 Oct 12 02:51 pilot3.tar.gz
[2025-10-12 07:11:38] -rwx------. 1 boinc boinc     36292 Oct 12 02:54 runpilot2-wrapper.sh
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc      5112 Oct 12 02:55 queuedata.json
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc       100 Oct 12 07:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 07:11:38] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 07:05 run_atlas
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc       105 Oct 12 07:05 job.xml
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc      6594 Oct 12 07:05 init_data.xml
[2025-10-12 07:11:38] -rw-r--r--. 2 boinc boinc 220092288 Oct 12 07:05 EVNT.46676267._001388.pool.root.1
[2025-10-12 07:11:38] -rw-r--r--. 2 boinc boinc     15120 Oct 12 07:05 start_atlas.sh
[2025-10-12 07:11:38] drwxrwx--x. 2 boinc boinc      4096 Oct 12 07:05 shared
[2025-10-12 07:11:38] -rw-r--r--. 2 boinc boinc    569686 Oct 12 07:05 input.tar.gz
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc         0 Oct 12 07:05 boinc_lockfile
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc      2550 Oct 12 07:05 pandaJob.out
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc    975528 Oct 12 07:06 agis_schedconf.cvmfs.json
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc   1560580 Oct 12 07:06 agis_ddmendpoints.agis.ALL.json
[2025-10-12 07:11:38] drwx------. 5 boinc boinc      4096 Oct 12 07:06 pilot3
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc       523 Oct 12 07:08 boinc_task_state.xml
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc       951 Oct 12 07:08 memory_monitor_summary.json
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc     21951 Oct 12 07:08 log.46676269._075556.job.log.tgz.1
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc      8394 Oct 12 07:11 heartbeat.json
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc        95 Oct 12 07:11 pilot_heartbeat.json
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc      8192 Oct 12 07:11 boinc_mmap_file
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc        22 Oct 12 07:11 wrapper_checkpoint.txt
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc      4822 Oct 12 07:11 pilotlog.txt
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc     94459 Oct 12 07:11 log.46676269._075556.job.log.1
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc       188 Oct 12 07:11 output.list
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc       620 Oct 12 07:11 runtime_log
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc    133120 Oct 12 07:11 result.tar.gz
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc      8528 Oct 12 07:11 runtime_log.err
[2025-10-12 07:11:38] -rw-------. 1 boinc boinc       644 Oct 12 07:11 DSFKDmDy7R8n9Rq4apOajLDm4fhM0noT9bVof3QYDm6aTMDmojFsYm.diag
[2025-10-12 07:11:38] -rw-r--r--. 1 boinc boinc     21791 Oct 12 07:11 stderr.txt
[2025-10-12 07:11:39] No HITS result produced
[2025-10-12 07:11:39]  *** Contents of shared directory: ***
[2025-10-12 07:11:39] total 215648
[2025-10-12 07:11:39] -rw-r--r--. 2 boinc boinc 220092288 Oct 12 07:05 ATLAS.root_0
[2025-10-12 07:11:39] -rw-r--r--. 2 boinc boinc     15120 Oct 12 07:05 start_atlas.sh
[2025-10-12 07:11:39] -rw-r--r--. 2 boinc boinc    569686 Oct 12 07:05 input.tar.gz
[2025-10-12 07:11:39] -rw-------. 1 boinc boinc    133120 Oct 12 07:11 result.tar.gz
07:11:40 (212702): run_atlas exited; CPU time 29.699043
07:11:40 (212702): called boinc_finish(0)

</stderr_txt>
]]>

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