Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
14:37:50 (798445): wrapper (7.7.26015): starting
14:37:50 (798445): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 14:37:50] Arguments: --nthreads 12
[2025-10-12 14:37:50] Threads: 12
[2025-10-12 14:37:50] Checking for CVMFS
[2025-10-12 14:37:50] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 14:37:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 14:37:50] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 14:37:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 14:37:51] 2.11.0.0 3299214 3191 87272 151623 1 188 5388595 6144000 13928 130560 0 62629539 100.000 114103 190 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-12 14:37:51] CVMFS is ok
[2025-10-12 14:37:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 14:37:51] Checking for apptainer binary...
[2025-10-12 14:37:51] apptainer is not installed, using version from CVMFS
[2025-10-12 14:37:51] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 14:37:51] radiat0r
[2025-10-12 14:37:51] apptainer works
[2025-10-12 14:37:51] Set ATHENA_PROC_NUMBER=12
[2025-10-12 14:37:51] Set ATHENA_CORE_NUMBER=12
[2025-10-12 14:37:51] Starting ATLAS job with PandaID=6839865920
[2025-10-12 14:37:51] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 15:31:17]  *** The last 200 lines of the pilot log: ***
[2025-10-12 15:31:18] 2025-10-12 15:30:37,114 | INFO     | stage-out finished correctly
[2025-10-12 15:31:18] 2025-10-12 15:30:37,218 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 15:31:18] 2025-10-12 15:30:37,399 | INFO     | job 6839865920 has state=finished
[2025-10-12 15:31:18] 2025-10-12 15:30:37,402 | INFO     | preparing for final server update for job 6839865920 in state='finished'
[2025-10-12 15:31:18] 2025-10-12 15:30:37,402 | INFO     | this job has now completed (state=finished)
[2025-10-12 15:31:18] 2025-10-12 15:30:37,402 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 15:31:18] 2025-10-12 15:30:37,402 | INFO     | log transfer has been attempted: DONE
[2025-10-12 15:31:18] 2025-10-12 15:30:37,402 | INFO     | job 6839865920 has finished - writing final server update
[2025-10-12 15:31:18] 2025-10-12 15:30:37,403 | INFO     | total number of processed events: 400 (read)
[2025-10-12 15:31:18] 2025-10-12 15:30:37,404 | INFO     | executing command: lscpu
[2025-10-12 15:31:18] 2025-10-12 15:30:37,592 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 15:31:18] 2025-10-12 15:30:38,348 | INFO     | time since job start (3152s) is within the limit (172800.0s)
[2025-10-12 15:31:18] 2025-10-12 15:30:39,763 | WARNING  | process 827348 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 15:31:18] 2025-10-12 15:30:39,766 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6839865920/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:31:18] 2025-10-12 15:30:39,767 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6839865920/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:31:18] 2025-10-12 15:30:39,768 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 15:31:18] 2025-10-12 15:30:39,768 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 15:31:18] 2025-10-12 15:30:39,769 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4318959 B
[2025-10-12 15:31:18] 2025-10-12 15:30:39,769 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15542 B
[2025-10-12 15:31:18] 2025-10-12 15:30:39,769 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-10-12 15:31:18] 2025-10-12 15:30:40,351 | INFO     | time since job start (3154s) is within the limit (172800.0s)
[2025-10-12 15:31:18] 2025-10-12 15:30:42,364 | INFO     | PID=806714 has CPU usage=21.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 15:31:18] 2025-10-12 15:30:42,364 | INFO     | .. there are 17 such processes running
[2025-10-12 15:31:18] 2025-10-12 15:30:43,364 | INFO     | time since job start (3157s) is within the limit (172800.0s)
[2025-10-12 15:31:18] 2025-10-12 15:30:44,316 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 15:31:18] 2025-10-12 15:30:44,344 | INFO     | sufficient remaining disk space (1725134012416 B)
[2025-10-12 15:31:18] 2025-10-12 15:30:44,345 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 15:31:18] 2025-10-12 15:30:44,346 | INFO     | size of work directory /var/lib/boinc/slots/9/PanDA_Pilot-6839865920: 4606703 B (within 2537553920 B limit)
[2025-10-12 15:31:18] 2025-10-12 15:30:44,347 | INFO     | pfn file=/var/lib/boinc/slots/9/PanDA_Pilot-6839865920/HITS.46676269._075655.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 15:31:18] 2025-10-12 15:30:44,347 | INFO     | total size of present files: 0 B (workdir size: 4606703 B)
[2025-10-12 15:31:18] 2025-10-12 15:30:44,347 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/9/PanDA_Pilot-6839865920/HITS.46676269._075655.pool.root.1 since it does not exist
[2025-10-12 15:31:18] 2025-10-12 15:30:44,450 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2327.6518359375
[2025-10-12 15:31:18] 2025-10-12 15:30:44,548 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6839865920/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 15:31:18] 2025-10-12 15:30:44,549 | INFO     | extracted standard info from prmon json
[2025-10-12 15:31:18] 2025-10-12 15:30:44,549 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 15:31:18] 2025-10-12 15:30:44,549 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 15:31:18] 2025-10-12 15:30:44,550 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 15:31:18] 2025-10-12 15:30:44,550 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 15:31:18] 2025-10-12 15:30:44,552 | INFO     | fitting pss+swap vs Time
[2025-10-12 15:31:18] 2025-10-12 15:30:44,552 | INFO     | sum of square deviations: 28242390.0
[2025-10-12 15:31:18] 2025-10-12 15:30:44,552 | INFO     | sum of deviations: 113406930.00000006
[2025-10-12 15:31:18] 2025-10-12 15:30:44,552 | INFO     | mean x: 1760281567.0
[2025-10-12 15:31:18] 2025-10-12 15:30:44,553 | INFO     | mean y: 2676056.8444444444
[2025-10-12 15:31:18] 2025-10-12 15:30:44,553 | INFO     | -- intersect: -7065710451.841946
[2025-10-12 15:31:18] 2025-10-12 15:30:44,553 | INFO     | intersect: -7065710451.841946
[2025-10-12 15:31:18] 2025-10-12 15:30:44,553 | INFO     | chi2: 0.0034185422417622627
[2025-10-12 15:31:18] 2025-10-12 15:30:44,553 | INFO     | -- intersect: -7065710451.841946
[2025-10-12 15:31:18] 2025-10-12 15:30:44,553 | INFO     | current memory leak: 4.02 B/s (using 45 data points, chi2=0.00)
[2025-10-12 15:31:18] 2025-10-12 15:30:44,553 | INFO     | could have reported an average CPU frequency of 2356 MHz (5 samples)
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | ..............................
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | . Timing measurements:
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | . get job = 0 s
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | . initial setup = 1 s
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | . payload setup = 8 s
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | . stage-in = 0 s
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | . payload execution = 3118 s
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | . stage-out = 0 s
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | . log creation = 0 s
[2025-10-12 15:31:18] 2025-10-12 15:30:44,554 | INFO     | ..............................
[2025-10-12 15:31:18] 2025-10-12 15:30:45,084 | INFO     | 
[2025-10-12 15:31:18] 2025-10-12 15:30:45,085 | INFO     | job summary report
[2025-10-12 15:31:18] 2025-10-12 15:30:45,085 | INFO     | --------------------------------------------------
[2025-10-12 15:31:18] 2025-10-12 15:30:45,085 | INFO     | PanDA job id: 6839865920
[2025-10-12 15:31:18] 2025-10-12 15:30:45,085 | INFO     | task id: 46676269
[2025-10-12 15:31:18] 2025-10-12 15:30:45,085 | INFO     | errors: (none)
[2025-10-12 15:31:18] 2025-10-12 15:30:45,086 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 15:31:18] 2025-10-12 15:30:45,086 | INFO     | pilot state: finished 
[2025-10-12 15:31:18] 2025-10-12 15:30:45,086 | INFO     | transexitcode: 0
[2025-10-12 15:31:18] 2025-10-12 15:30:45,086 | INFO     | exeerrorcode: 0
[2025-10-12 15:31:18] 2025-10-12 15:30:45,086 | INFO     | exeerrordiag: 
[2025-10-12 15:31:18] 2025-10-12 15:30:45,086 | INFO     | exitcode: 0
[2025-10-12 15:31:18] 2025-10-12 15:30:45,087 | INFO     | exitmsg: OK
[2025-10-12 15:31:18] 2025-10-12 15:30:45,087 | INFO     | cpuconsumptiontime: 32500 s
[2025-10-12 15:31:18] 2025-10-12 15:30:45,087 | INFO     | nevents: 400
[2025-10-12 15:31:18] 2025-10-12 15:30:45,087 | INFO     | neventsw: 0
[2025-10-12 15:31:18] 2025-10-12 15:30:45,087 | INFO     | pid: 827348
[2025-10-12 15:31:18] 2025-10-12 15:30:45,087 | INFO     | pgrp: 827348
[2025-10-12 15:31:18] 2025-10-12 15:30:45,088 | INFO     | corecount: 12
[2025-10-12 15:31:18] 2025-10-12 15:30:45,088 | INFO     | event service: False
[2025-10-12 15:31:18] 2025-10-12 15:30:45,088 | INFO     | sizes: {0: 2348686, 1: 2348885, 8: 2349147, 12: 2349175, 3130: 2374717, 3131: 2374716, 3133: 2383954, 3140: 2384152}
[2025-10-12 15:31:18] 2025-10-12 15:30:45,088 | INFO     | --------------------------------------------------
[2025-10-12 15:31:18] 2025-10-12 15:30:45,088 | INFO     | 
[2025-10-12 15:31:18] 2025-10-12 15:30:45,089 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2025-10-12 15:31:18] 2025-10-12 15:30:45,123 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,124 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,124 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,124 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,124 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,124 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,125 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,125 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,125 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,125 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,125 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,125 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,126 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,126 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,126 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,126 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,126 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,126 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 15:31:18] 2025-10-12 15:30:45,126 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,126 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 15:31:18] 2025-10-12 15:30:45,127 | INFO     | job 6839865920 has completed (purged errors)
[2025-10-12 15:31:18] 2025-10-12 15:30:45,127 | INFO     | overall cleanup function is called
[2025-10-12 15:31:18] 2025-10-12 15:30:45,367 | INFO     | number of running child processes to parent process 827348: 1
[2025-10-12 15:31:18] 2025-10-12 15:30:45,368 | INFO     | maximum number of monitored processes: 6
[2025-10-12 15:31:18] 2025-10-12 15:30:45,368 | INFO     | aborting job monitoring since job object (job id=6839865920) has expired
[2025-10-12 15:31:18] 2025-10-12 15:30:46,135 | INFO     | --- collectZombieJob: --- 10, [827348]
[2025-10-12 15:31:18] 2025-10-12 15:30:46,135 | INFO     | zombie collector waiting for pid 827348
[2025-10-12 15:31:18] 2025-10-12 15:30:46,135 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 15:31:18] 2025-10-12 15:30:46,135 | INFO     | collected zombie processes
[2025-10-12 15:31:18] 2025-10-12 15:30:46,135 | INFO     | will attempt to kill all subprocesses of pid=827348
[2025-10-12 15:31:18] 2025-10-12 15:30:46,909 | INFO     | process IDs to be killed: [827348] (in reverse order)
[2025-10-12 15:31:18] 2025-10-12 15:30:47,187 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 15:31:18] 2025-10-12 15:30:47,187 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 15:31:18] 2025-10-12 15:30:47,217 | INFO     | did not find any defunct processes belonging to 827348
[2025-10-12 15:31:18] 2025-10-12 15:30:47,245 | INFO     | did not find any defunct processes belonging to 827348
[2025-10-12 15:31:18] 2025-10-12 15:30:47,246 | INFO     | ready for new job
[2025-10-12 15:31:18] 2025-10-12 15:30:47,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 15:31:18] 2025-10-12 15:30:47,249 | INFO     | ***************************************
[2025-10-12 15:31:18] 2025-10-12 15:30:47,249 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 15:31:18] 2025-10-12 15:30:47,249 | INFO     | ***************************************
[2025-10-12 15:31:18] 2025-10-12 15:30:47,249 | INFO     | 
[2025-10-12 15:31:18] 2025-10-12 15:30:47,287 | INFO     | architecture information:
[2025-10-12 15:31:18] 2025-10-12 15:30:47,288 | INFO     | executing command: cat /etc/os-release
[2025-10-12 15:31:18] 2025-10-12 15:30:47,312 | INFO     | cat /etc/os-release:
[2025-10-12 15:31:18] NAME="CentOS Linux"
[2025-10-12 15:31:18] VERSION="7 (Core)"
[2025-10-12 15:31:18] ID="centos"
[2025-10-12 15:31:18] ID_LIKE="rhel fedora"
[2025-10-12 15:31:18] VERSION_ID="7"
[2025-10-12 15:31:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 15:31:18] ANSI_COLOR="0;31"
[2025-10-12 15:31:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 15:31:18] HOME_URL="https://www.centos.org/"
[2025-10-12 15:31:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 15:31:18] 
[2025-10-12 15:31:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 15:31:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 15:31:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 15:31:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 15:31:18] 
[2025-10-12 15:31:18] 2025-10-12 15:30:47,313 | INFO     | ***************************************
[2025-10-12 15:31:18] 2025-10-12 15:30:47,815 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2025-10-12 15:31:18] 2025-10-12 15:30:47,843 | INFO     | sufficient remaining disk space (1727120015360 B)
[2025-10-12 15:31:18] 2025-10-12 15:30:47,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 15:31:18] 2025-10-12 15:30:47,843 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 15:31:18] 2025-10-12 15:30:47,843 | INFO     | update_server=False
[2025-10-12 15:31:18] 2025-10-12 15:30:47,843 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 15:31:18] 2025-10-12 15:30:47,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 15:31:18] 2025-10-12 15:30:47,844 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 15:31:18] 2025-10-12 15:30:47,871 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 15:31:18] 2025-10-12 15:30:47,872 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 15:31:18] 2025-10-12 15:30:47,872 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:31:18] 2025-10-12 15:30:47,872 | INFO     | will abort loop
[2025-10-12 15:31:18] 2025-10-12 15:30:48,222 | INFO     | all job control threads have been joined
[2025-10-12 15:31:18] 2025-10-12 15:30:48,607 | INFO     | all data control threads have been joined
[2025-10-12 15:31:18] 2025-10-12 15:30:48,612 | INFO     | all payload control threads have been joined
[2025-10-12 15:31:18] 2025-10-12 15:30:48,849 | INFO     | [job] retrieve thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:48,874 | INFO     | [job] job monitor thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,158 | INFO     | [payload] validate_post thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,228 | INFO     | [job] control thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,270 | INFO     | [data] copytool_in thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,308 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,318 | INFO     | [job] validate thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,611 | INFO     | [data] control thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,615 | INFO     | [payload] control thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,658 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 15:31:18] 2025-10-12 15:30:49,671 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,718 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:49,850 | INFO     | [data] copytool_out thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:50,070 | INFO     | [payload] failed_post thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:50,662 | INFO     | [job] queue monitor thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:51,846 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:30:58,397 | INFO     | job.realtimelogging is not enabled
[2025-10-12 15:31:18] 2025-10-12 15:30:59,398 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 15:31:18] 2025-10-12 15:31:10,902 | INFO     | [monitor] cgroup control has ended
[2025-10-12 15:31:18] 2025-10-12 15:31:11,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140555512710976)>', '<ExcThread(monitor, started 140554943850240)>']
[2025-10-12 15:31:18] 2025-10-12 15:31:16,722 | INFO     | all workflow threads have been joined
[2025-10-12 15:31:18] 2025-10-12 15:31:16,723 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 15:31:18] 2025-10-12 15:31:16,723 | INFO     | traces error code: 0
[2025-10-12 15:31:18] 2025-10-12 15:31:16,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 15:31:18] 2025-10-12 15:31:17,467 | INFO     | PID=806714 has CPU usage=8.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 15:31:18] 2025-10-12 15:31:17,468 | INFO     | .. there are 16 such processes running
[2025-10-12 15:31:18] 2025-10-12 15:31:17,468 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 15:31:18] 2025-10-12 15:31:17,469 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 15:31:18] 2025-10-12 15:31:17,469 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 15:31:18] 2025-10-12 15:31:17,469 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 15:31:18] 2025-10-12 15:31:17,469 | INFO     | [monitor] control thread has ended
[2025-10-12 15:31:18] 2025-10-12 15:31:17,641 [wrapper] ==== pilot stdout END ====
[2025-10-12 15:31:18] 2025-10-12 15:31:17,646 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 15:31:18] 2025-10-12 15:31:17,649 [wrapper] pilotpid: 806714
[2025-10-12 15:31:18] 2025-10-12 15:31:17,653 [wrapper] Pilot exit status: 0
[2025-10-12 15:31:18] 2025-10-12 15:31:17,665 [wrapper] pandaids: 6839865920
[2025-10-12 15:31:18] 2025-10-12 15:31:17,844 [wrapper] cleanup supervisor_pilot 1183484 806715
[2025-10-12 15:31:18] 2025-10-12 15:31:17,848 [wrapper] Test setup, not cleaning
[2025-10-12 15:31:18] 2025-10-12 15:31:17,851 [wrapper] apfmon messages muted
[2025-10-12 15:31:18] 2025-10-12 15:31:17,854 [wrapper] ==== wrapper stdout END ====
[2025-10-12 15:31:18] 2025-10-12 15:31:17,858 [wrapper] ==== wrapper stderr END ====
[2025-10-12 15:31:18]  *** Error codes and diagnostics ***
[2025-10-12 15:31:18]     "exeErrorCode": 0,
[2025-10-12 15:31:18]     "exeErrorDiag": "",
[2025-10-12 15:31:18]     "pilotErrorCode": 0,
[2025-10-12 15:31:18]     "pilotErrorDiag": "",
[2025-10-12 15:31:18]  *** Listing of results directory ***
[2025-10-12 15:31:18] total 412160
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc    557409 Oct 12 09:51 pilot3.tar.gz
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc      5112 Oct 12 10:02 queuedata.json
[2025-10-12 15:31:18] -rwx------ 1 boinc boinc     36292 Oct 12 10:03 runpilot2-wrapper.sh
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc       100 Oct 12 14:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 15:31:18] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 14:37 run_atlas
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc       105 Oct 12 14:37 job.xml
[2025-10-12 15:31:18] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:37 start_atlas.sh
[2025-10-12 15:31:18] drwxrwx--x 2 boinc boinc      4096 Oct 12 14:37 shared
[2025-10-12 15:31:18] -rw-r--r-- 2 boinc boinc    569684 Oct 12 14:37 input.tar.gz
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc      9395 Oct 12 14:37 init_data.xml
[2025-10-12 15:31:18] -rw-r--r-- 2 boinc boinc 220316495 Oct 12 14:37 EVNT.46676267._003600.pool.root.1
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:37 boinc_setup_complete
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc         0 Oct 12 14:37 boinc_lockfile
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc      2550 Oct 12 14:37 pandaJob.out
[2025-10-12 15:31:18] -rw------- 1 boinc boinc    975528 Oct 12 14:38 agis_schedconf.cvmfs.json
[2025-10-12 15:31:18] -rw------- 1 boinc boinc   1560580 Oct 12 14:38 agis_ddmendpoints.agis.ALL.json
[2025-10-12 15:31:18] drwx------ 5 boinc boinc      4096 Oct 12 14:38 pilot3
[2025-10-12 15:31:18] -rw------- 1 boinc boinc 196160998 Oct 12 15:29 HITS.46676269._075655.pool.root.1
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc       530 Oct 12 15:30 boinc_task_state.xml
[2025-10-12 15:31:18] -rw------- 1 boinc boinc      1028 Oct 12 15:30 memory_monitor_summary.json
[2025-10-12 15:31:18] -rw------- 1 boinc boinc    367889 Oct 12 15:30 log.46676269._075655.job.log.tgz.1
[2025-10-12 15:31:18] -rw------- 1 boinc boinc      7743 Oct 12 15:30 heartbeat.json
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc      8192 Oct 12 15:31 boinc_mmap_file
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc        27 Oct 12 15:31 wrapper_checkpoint.txt
[2025-10-12 15:31:18] -rw------- 1 boinc boinc       822 Oct 12 15:31 pilotlog.txt
[2025-10-12 15:31:18] -rw------- 1 boinc boinc        95 Oct 12 15:31 pilot_heartbeat.json
[2025-10-12 15:31:18] -rw------- 1 boinc boinc    467793 Oct 12 15:31 log.46676269._075655.job.log.1
[2025-10-12 15:31:18] -rw------- 1 boinc boinc       357 Oct 12 15:31 output.list
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc       620 Oct 12 15:31 runtime_log
[2025-10-12 15:31:18] -rw------- 1 boinc boinc    849920 Oct 12 15:31 result.tar.gz
[2025-10-12 15:31:18] -rw------- 1 boinc boinc       643 Oct 12 15:31 y1BMDmC67R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmtbTMDmt4nGNn.diag
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc      8658 Oct 12 15:31 runtime_log.err
[2025-10-12 15:31:18] -rw-r--r-- 1 boinc boinc     22141 Oct 12 15:31 stderr.txt
[2025-10-12 15:31:18] HITS file was successfully produced:
[2025-10-12 15:31:18] -rw------- 1 boinc boinc 196160998 Oct 12 15:29 shared/HITS.pool.root.1
[2025-10-12 15:31:18]  *** Contents of shared directory: ***
[2025-10-12 15:31:18] total 408136
[2025-10-12 15:31:18] -rw-r--r-- 2 boinc boinc     15120 Oct 12 14:37 start_atlas.sh
[2025-10-12 15:31:18] -rw-r--r-- 2 boinc boinc    569684 Oct 12 14:37 input.tar.gz
[2025-10-12 15:31:18] -rw-r--r-- 2 boinc boinc 220316495 Oct 12 14:37 ATLAS.root_0
[2025-10-12 15:31:18] -rw------- 1 boinc boinc 196160998 Oct 12 15:29 HITS.pool.root.1
[2025-10-12 15:31:18] -rw------- 1 boinc boinc    849920 Oct 12 15:31 result.tar.gz
15:31:19 (798445): run_atlas exited; CPU time 32695.515614
15:31:19 (798445): called boinc_finish(0)

</stderr_txt>
]]>

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