Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:51:37 (823274): wrapper (7.7.26015): starting
06:51:37 (823274): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 06:51:38] Arguments: --nthreads 8
[2025-10-12 06:51:38] Threads: 8
[2025-10-12 06:51:38] Checking for CVMFS
[2025-10-12 06:51:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 06:51:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 06:51:38] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 06:51:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 06:51:39] 2.11.3.0 2154 31528 196368 151621 2 261 34211336 45568001 15700 130560 0 197494982 99.873 71546889 25470 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-12 06:51:39] CVMFS is ok
[2025-10-12 06:51:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 06:51:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 06:51:39] Further information can be found at the LHC@home message board.
[2025-10-12 06:51:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 06:51:39] Checking for apptainer binary...
[2025-10-12 06:51:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 06:51:39] Running /usr/bin/apptainer --version
[2025-10-12 06:51:39] apptainer version 1.4.1-1.el9
[2025-10-12 06:51:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 06:51:40] wns0007.triumf.lcg
[2025-10-12 06:51:40] apptainer works
[2025-10-12 06:51:40] Set ATHENA_PROC_NUMBER=8
[2025-10-12 06:51:40] Set ATHENA_CORE_NUMBER=8
[2025-10-12 06:51:40] Starting ATLAS job with PandaID=6839866294
[2025-10-12 06:51:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 06:58:32]  *** The last 200 lines of the pilot log: ***
[2025-10-12 06:58:32] 2025-10-12 13:57:56,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:58:32] 2025-10-12 13:57:56,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:58:32] 2025-10-12 13:57:56,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:58:32] 2025-10-12 13:57:56,465 | WARNING  | wrong length of table data, x=[1760277245.0, 1760277306.0], y=[16286.0, 497575.0] (must be same and length>=4)
[2025-10-12 06:58:32] 2025-10-12 13:57:56,466 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 06:58:32] 2025-10-12 13:57:56,467 | INFO     | ..............................
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . Timing measurements:
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . get job = 0 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . initial setup = 6 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . payload setup = 34 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . stage-in = 0 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . payload execution = 108 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . stage-out = 1 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . log creation = 0 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | ..............................
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 06:58:32] 2025-10-12 13:57:56,469 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839866294/pilotlog.txt
[2025-10-12 06:58:32] 2025-10-12 13:57:56,542 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-12 06:58:32] - Log from pilotlog.txt -
[2025-10-12 06:58:32] 2025-10-12 13:57:56,440 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839866294/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:58:32] 2025-10-12 13:57:56,440 | INFO     | extracted standard info from prmon json
[2025-10-12 06:58:32] 2025-10-12 13:57:56,440 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:58:32] 2025-10-12 13:57:56,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:58:32] 2025-10-12 13:57:56,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:58:32] 2025-10-12 13:57:56,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:58:32] 2025-10-12 13:57:56,465 | WARNING  | wrong length of table data, x=[1760277245.0, 1760277306.0], y=[16286.0, 497575.0] (must be same and length>=4)
[2025-10-12 06:58:32] 2025-10-12 13:57:56,466 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 06:58:32] 2025-10-12 13:57:56,467 | INFO     | ..............................
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . Timing measurements:
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . get job = 0 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . initial setup = 6 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . payload setup = 34 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . stage-in = 0 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . payload execution = 108 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . stage-out = 1 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . log creation = 0 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | ..............................
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 06:58:32] 2025-10-12 13:57:56,469 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839866294/pilotlog.txt
[2025-10-12 06:58:32] 2025-10-12 13:57:56,542 | WARNING  | 
[2025-10-12 06:58:32] [begin log extracts]
[2025-10-12 06:58:32] - Log from pilotlog.txt -
[2025-10-12 06:58:32] 2025-10-12 13:57:56,440 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6839866294/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 06:58:32] 2025-10-12 13:57:56,440 | INFO     | extracted standard info from prmon json
[2025-10-12 06:58:32] 2025-10-12 13:57:56,440 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 06:58:32] 2025-10-12 13:57:56,440 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 06:58:32] 2025-10-12 13:57:56,464 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 06:58:32] 2025-10-12 13:57:56,465 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 06:58:32] 2025-10-12 13:57:56,465 | WARNING  | wrong length of table data, x=[1760277245.0, 1760277306.0], y=[16286.0, 497575.0] (must be same and length>=4)
[2025-10-12 06:58:32] 2025-10-12 13:57:56,466 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-10-12 06:58:32] 2025-10-12 13:57:56,467 | INFO     | ..............................
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . Timing measurements:
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . get job = 0 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . initial setup = 6 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . payload setup = 34 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . stage-in = 0 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . payload execution = 108 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . stage-out = 1 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | . log creation = 0 s
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | ..............................
[2025-10-12 06:58:32] 2025-10-12 13:57:56,468 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-12 06:58:32] 2025-10-12 13:57:56,469 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6839866294/pilotlog.txt
[2025-10-12 06:58:32] [end log extracts]
[2025-10-12 06:58:32] 2025-10-12 13:57:56,543 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-12 06:58:32] 2025-10-12 13:57:56,543 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-12 06:58:32] 2025-10-12 13:57:57,000 | INFO     | 
[2025-10-12 06:58:32] 2025-10-12 13:57:57,005 | INFO     | job summary report
[2025-10-12 06:58:32] 2025-10-12 13:57:57,005 | INFO     | --------------------------------------------------
[2025-10-12 06:58:32] 2025-10-12 13:57:57,005 | INFO     | PanDA job id: 6839866294
[2025-10-12 06:58:32] 2025-10-12 13:57:57,005 | INFO     | task id: 46676269
[2025-10-12 06:58:32] 2025-10-12 13:57:57,005 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-12 06:55:24,803 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | pilot state: failed 
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | transexitcode: 65
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | exeerrorcode: 65
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | exitcode: 65
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | cpuconsumptiontime: 19 s
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | nevents: 0
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | neventsw: 0
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | pid: 834147
[2025-10-12 06:58:32] 2025-10-12 13:57:57,006 | INFO     | pgrp: 834147
[2025-10-12 06:58:32] 2025-10-12 13:57:57,007 | INFO     | corecount: 8
[2025-10-12 06:58:32] 2025-10-12 13:57:57,007 | INFO     | event service: False
[2025-10-12 06:58:32] 2025-10-12 13:57:57,007 | INFO     | sizes: {0: 2347978, 1: 2348660, 2: 2348859, 13: 2348859, 23: 2349177, 24: 2349205, 147: 2372670, 150: 2376962, 153: 2376990, 288: 2377156}
[2025-10-12 06:58:32] 2025-10-12 13:57:57,007 | INFO     | --------------------------------------------------
[2025-10-12 06:58:32] 2025-10-12 13:57:57,007 | INFO     | 
[2025-10-12 06:58:32] 2025-10-12 13:57:57,010 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-12 06:58:32] 2025-10-12 13:57:57,064 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,068 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,069 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,069 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,069 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,069 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,069 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,069 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 06:58:32] 2025-10-12 13:57:57,069 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,069 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 06:58:32] 2025-10-12 13:57:57,069 | INFO     | job 6839866294 has completed (purged errors)
[2025-10-12 06:58:32] 2025-10-12 13:57:57,070 | INFO     | overall cleanup function is called
[2025-10-12 06:58:32] 2025-10-12 13:57:58,088 | INFO     | --- collectZombieJob: --- 10, [834147]
[2025-10-12 06:58:32] 2025-10-12 13:57:58,089 | INFO     | zombie collector waiting for pid 834147
[2025-10-12 06:58:32] 2025-10-12 13:57:58,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 06:58:32] 2025-10-12 13:57:58,089 | INFO     | collected zombie processes
[2025-10-12 06:58:32] 2025-10-12 13:57:58,089 | INFO     | will attempt to kill all subprocesses of pid=834147
[2025-10-12 06:58:32] 2025-10-12 13:57:58,611 | INFO     | process IDs to be killed: [834147] (in reverse order)
[2025-10-12 06:58:32] 2025-10-12 13:57:58,764 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 06:58:32] 2025-10-12 13:57:58,764 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 06:58:32] 2025-10-12 13:57:58,777 | INFO     | did not find any defunct processes belonging to 834147
[2025-10-12 06:58:32] 2025-10-12 13:57:58,791 | INFO     | did not find any defunct processes belonging to 834147
[2025-10-12 06:58:32] 2025-10-12 13:57:58,791 | INFO     | ready for new job
[2025-10-12 06:58:32] 2025-10-12 13:57:58,791 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 06:58:32] 2025-10-12 13:57:58,792 | INFO     | ***************************************
[2025-10-12 06:58:32] 2025-10-12 13:57:58,792 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 06:58:32] 2025-10-12 13:57:58,793 | INFO     | ***************************************
[2025-10-12 06:58:32] 2025-10-12 13:57:58,793 | INFO     | 
[2025-10-12 06:58:32] 2025-10-12 13:57:58,794 | INFO     | architecture information:
[2025-10-12 06:58:32] 2025-10-12 13:57:58,796 | INFO     | executing command: cat /etc/os-release
[2025-10-12 06:58:32] 2025-10-12 13:57:58,814 | INFO     | cat /etc/os-release:
[2025-10-12 06:58:32] NAME="CentOS Linux"
[2025-10-12 06:58:32] VERSION="7 (Core)"
[2025-10-12 06:58:32] ID="centos"
[2025-10-12 06:58:32] ID_LIKE="rhel fedora"
[2025-10-12 06:58:32] VERSION_ID="7"
[2025-10-12 06:58:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 06:58:32] ANSI_COLOR="0;31"
[2025-10-12 06:58:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 06:58:32] HOME_URL="https://www.centos.org/"
[2025-10-12 06:58:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 06:58:32] 
[2025-10-12 06:58:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 06:58:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 06:58:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 06:58:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 06:58:32] 
[2025-10-12 06:58:32] 2025-10-12 13:57:58,814 | INFO     | ***************************************
[2025-10-12 06:58:32] 2025-10-12 13:57:59,316 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-12 06:58:32] 2025-10-12 13:57:59,357 | INFO     | sufficient remaining disk space (1269488943104 B)
[2025-10-12 06:58:32] 2025-10-12 13:57:59,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 06:58:32] 2025-10-12 13:57:59,357 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 06:58:32] 2025-10-12 13:57:59,357 | INFO     | update_server=False
[2025-10-12 06:58:32] 2025-10-12 13:57:59,357 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 06:58:32] 2025-10-12 13:57:59,358 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:58:32] 2025-10-12 13:57:59,358 | INFO     | aborting loop
[2025-10-12 06:58:32] 2025-10-12 13:57:59,358 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 06:58:32] 2025-10-12 13:57:59,366 | INFO     | all job control threads have been joined
[2025-10-12 06:58:32] 2025-10-12 13:58:00,245 | INFO     | all data control threads have been joined
[2025-10-12 06:58:32] 2025-10-12 13:58:00,259 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 06:58:32] 2025-10-12 13:58:00,363 | INFO     | [job] retrieve thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:00,364 | INFO     | [job] job monitor thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:00,365 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:00,373 | INFO     | [job] control thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:00,757 | INFO     | all payload control threads have been joined
[2025-10-12 06:58:32] 2025-10-12 13:58:00,851 | INFO     | [data] copytool_in thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:00,931 | INFO     | [job] validate thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:01,022 | INFO     | [payload] failed_post thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:01,251 | INFO     | [data] control thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:01,385 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:01,534 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:01,574 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:01,711 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 06:58:32] 2025-10-12 13:58:01,764 | INFO     | [payload] control thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:01,874 | INFO     | [payload] validate_post thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:02,266 | INFO     | [data] copytool_out thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:02,717 | INFO     | [job] queue monitor thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:03,369 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 06:58:32] 2025-10-12 13:58:25,195 | INFO     | [monitor] cgroup control has ended
[2025-10-12 06:58:32] 2025-10-12 13:58:26,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140504590595904)>', '<ExcThread(monitor, started 140504175978240)>']
[2025-10-12 06:58:32] 2025-10-12 13:58:29,516 | INFO     | PID=827332 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 06:58:32] 2025-10-12 13:58:29,516 | INFO     | .. there are 33 such processes running
[2025-10-12 06:58:32] 2025-10-12 13:58:29,517 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 06:58:32] 2025-10-12 13:58:29,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 06:58:32] 2025-10-12 13:58:29,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 06:58:32] 2025-10-12 13:58:29,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 06:58:32] 2025-10-12 13:58:29,518 | INFO     | [monitor] control thread has ended
[2025-10-12 06:58:32] 2025-10-12 13:58:31,291 | INFO     | all workflow threads have been joined
[2025-10-12 06:58:32] 2025-10-12 13:58:31,291 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 06:58:32] 2025-10-12 13:58:31,291 | INFO     | traces error code: 0
[2025-10-12 06:58:32] 2025-10-12 13:58:31,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 06:58:32] 2025-10-12 13:58:31,764 [wrapper] ==== pilot stdout END ====
[2025-10-12 06:58:32] 2025-10-12 13:58:31,770 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 06:58:32] 2025-10-12 13:58:31,776 [wrapper] pilotpid: 827332
[2025-10-12 06:58:32] 2025-10-12 13:58:31,780 [wrapper] Pilot exit status: 0
[2025-10-12 06:58:32] 2025-10-12 13:58:31,796 [wrapper] pandaids: 6839866294
[2025-10-12 06:58:32] 2025-10-12 13:58:31,861 [wrapper] cleanup supervisor_pilot  827338 827333
[2025-10-12 06:58:32] 2025-10-12 13:58:31,863 [wrapper] Test setup, not cleaning
[2025-10-12 06:58:32] 2025-10-12 13:58:31,865 [wrapper] apfmon messages muted
[2025-10-12 06:58:32] 2025-10-12 13:58:31,867 [wrapper] ==== wrapper stdout END ====
[2025-10-12 06:58:32] 2025-10-12 13:58:31,869 [wrapper] ==== wrapper stderr END ====
[2025-10-12 06:58:32]  *** Error codes and diagnostics ***
[2025-10-12 06:58:32]     "exeErrorCode": 65,
[2025-10-12 06:58:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 06:58:32]     "pilotErrorCode": 1305,
[2025-10-12 06:58:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-12 06:58:32]  *** Listing of results directory ***
[2025-10-12 06:58:32] total 218808
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc    557409 Oct 12 03:16 pilot3.tar.gz
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc      5112 Oct 12 03:18 queuedata.json
[2025-10-12 06:58:32] -rwx------. 1 boinc boinc     36292 Oct 12 03:19 runpilot2-wrapper.sh
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc       100 Oct 12 06:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 06:58:32] -rwxr-xr-x. 1 boinc boinc      7986 Oct 12 06:51 run_atlas
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc       105 Oct 12 06:51 job.xml
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc      6443 Oct 12 06:51 init_data.xml
[2025-10-12 06:58:32] -rw-r--r--. 2 boinc boinc 219907019 Oct 12 06:51 EVNT.46676267._003619.pool.root.1
[2025-10-12 06:58:32] -rw-r--r--. 2 boinc boinc     15120 Oct 12 06:51 start_atlas.sh
[2025-10-12 06:58:32] drwxrwx--x. 2 boinc boinc      4096 Oct 12 06:51 shared
[2025-10-12 06:58:32] -rw-r--r--. 2 boinc boinc    569682 Oct 12 06:51 input.tar.gz
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc         0 Oct 12 06:51 boinc_lockfile
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc      2549 Oct 12 06:51 pandaJob.out
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc    975528 Oct 12 06:52 agis_schedconf.cvmfs.json
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc   1560580 Oct 12 06:52 agis_ddmendpoints.agis.ALL.json
[2025-10-12 06:58:32] drwx------. 5 boinc boinc      4096 Oct 12 06:52 pilot3
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc       525 Oct 12 06:55 boinc_task_state.xml
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc       991 Oct 12 06:55 memory_monitor_summary.json
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc     23074 Oct 12 06:55 log.46676269._076012.job.log.tgz.1
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc      8440 Oct 12 06:57 heartbeat.json
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc        95 Oct 12 06:58 pilot_heartbeat.json
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc      8192 Oct 12 06:58 boinc_mmap_file
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc      4822 Oct 12 06:58 pilotlog.txt
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc        23 Oct 12 06:58 wrapper_checkpoint.txt
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc    101408 Oct 12 06:58 log.46676269._076012.job.log.1
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc       188 Oct 12 06:58 output.list
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc       620 Oct 12 06:58 runtime_log
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc    143360 Oct 12 06:58 result.tar.gz
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc      8526 Oct 12 06:58 runtime_log.err
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc       644 Oct 12 06:58 lK1KDmAM8R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2RjNDmL2RB0n.diag
[2025-10-12 06:58:32] -rw-r--r--. 1 boinc boinc     21877 Oct 12 06:58 stderr.txt
[2025-10-12 06:58:32] No HITS result produced
[2025-10-12 06:58:32]  *** Contents of shared directory: ***
[2025-10-12 06:58:32] total 215476
[2025-10-12 06:58:32] -rw-r--r--. 2 boinc boinc 219907019 Oct 12 06:51 ATLAS.root_0
[2025-10-12 06:58:32] -rw-r--r--. 2 boinc boinc     15120 Oct 12 06:51 start_atlas.sh
[2025-10-12 06:58:32] -rw-r--r--. 2 boinc boinc    569682 Oct 12 06:51 input.tar.gz
[2025-10-12 06:58:32] -rw-------. 1 boinc boinc    143360 Oct 12 06:58 result.tar.gz
06:58:33 (823274): run_atlas exited; CPU time 31.030458
06:58:33 (823274): called boinc_finish(0)

</stderr_txt>
]]>

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