Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
10:00:29 (992039): wrapper (7.7.26015): starting
10:00:29 (992039): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 10:00:29] Arguments: --nthreads 12
[2025-10-12 10:00:29] Threads: 12
[2025-10-12 10:00:29] Checking for CVMFS
[2025-10-12 10:00:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:00:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:00:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:00:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:00:29] 2.13.2.0 14624 613 51192 151621 2 188 2510483 4096001 922 130560 0 2432923 99.998 24268 1528 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-12 10:00:29] CVMFS is ok
[2025-10-12 10:00:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:00:29] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-12 10:00:29] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-12 10:00:29] Further information can be found at the LHC@home message board.
[2025-10-12 10:00:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:00:29] Checking for apptainer binary...
[2025-10-12 10:00:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:00:29] Running /usr/bin/apptainer --version
[2025-10-12 10:00:29] apptainer version 1.4.3
[2025-10-12 10:00:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:00:29] zhiwei-Z790-Riptide-WiFi
[2025-10-12 10:00:29] apptainer works
[2025-10-12 10:00:29] Set ATHENA_PROC_NUMBER=12
[2025-10-12 10:00:29] Set ATHENA_CORE_NUMBER=12
[2025-10-12 10:00:29] Starting ATLAS job with PandaID=6839822855
[2025-10-12 10:00:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:24:44]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:24:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/8e/log.46676269._075467.job.log.tgz.1
[2025-10-12 10:24:44]  workdir=None
[2025-10-12 10:24:44] ]
[2025-10-12 10:24:44] 2025-10-12 14:24:10,610 | INFO     | transferring file log.46676269._075467.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6839822855/log.46676269._075467.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-12 10:24:44] 2025-10-12 14:24:10,610 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6839822855/log.46676269._075467.job.log.tgz.1 /var/lib/boinc/slots/0/log.46676269._075467.job
[2025-10-12 10:24:44] 2025-10-12 14:24:10,619 | INFO     | adding to output.list: log.46676269._075467.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c8/8e/log.46676269._075467.job.log.tg
[2025-10-12 10:24:44] 2025-10-12 14:24:10,619 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 10:24:44] 2025-10-12 14:24:10,619 | INFO     | summary of transferred files:
[2025-10-12 10:24:44] 2025-10-12 14:24:10,619 | INFO     |  -- lfn=log.46676269._075467.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 10:24:44] 2025-10-12 14:24:10,620 | INFO     | stage-out finished correctly
[2025-10-12 10:24:44] 2025-10-12 14:24:10,649 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 10:24:44] 2025-10-12 14:24:10,721 | INFO     | job 6839822855 has state=finished
[2025-10-12 10:24:44] 2025-10-12 14:24:10,721 | INFO     | preparing for final server update for job 6839822855 in state='finished'
[2025-10-12 10:24:44] 2025-10-12 14:24:10,721 | INFO     | this job has now completed (state=finished)
[2025-10-12 10:24:44] 2025-10-12 14:24:10,721 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 10:24:44] 2025-10-12 14:24:10,721 | INFO     | log transfer has been attempted: DONE
[2025-10-12 10:24:44] 2025-10-12 14:24:10,721 | INFO     | job 6839822855 has finished - writing final server update
[2025-10-12 10:24:44] 2025-10-12 14:24:10,721 | INFO     | total number of processed events: 400 (read)
[2025-10-12 10:24:44] 2025-10-12 14:24:10,722 | INFO     | executing command: lscpu
[2025-10-12 10:24:44] 2025-10-12 14:24:10,736 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 10:24:44] 2025-10-12 14:24:11,134 | INFO     | time since job start (1417s) is within the limit (172800.0s)
[2025-10-12 10:24:44] 2025-10-12 14:24:12,019 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 10:24:44] 2025-10-12 14:24:12,021 | INFO     | found 24 cores (24 cores per socket, 1 socket) , CPU MHz: 3556.20821875
[2025-10-12 10:24:44] 2025-10-12 14:24:12,023 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6839822855/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:24:44] 2025-10-12 14:24:12,023 | INFO     | extracted standard info from prmon json
[2025-10-12 10:24:44] 2025-10-12 14:24:12,023 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 10:24:44] 2025-10-12 14:24:12,023 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | sum of square deviations: 1265140.0
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | sum of deviations: -360155559.5
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | mean x: 1760278413.5
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | mean y: 2812633.0625
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | -- intersect: 501112616204.102
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | intersect: 501112616204.102
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | chi2: 0.006476171225299788
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | -- intersect: 501112616204.102
[2025-10-12 10:24:44] 2025-10-12 14:24:12,024 | INFO     | current memory leak: -284.68 B/s (using 16 data points, chi2=0.01)
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | could have reported an average CPU frequency of 3687 MHz (4 samples)
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | ..............................
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | . Timing measurements:
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | . get job = 0 s
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | . initial setup = 2 s
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | . payload setup = 2 s
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | . stage-in = 0 s
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | . payload execution = 1398 s
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | . stage-out = 0 s
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | . log creation = 0 s
[2025-10-12 10:24:44] 2025-10-12 14:24:12,025 | INFO     | ..............................
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | 
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | job summary report
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | --------------------------------------------------
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | PanDA job id: 6839822855
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | task id: 46676269
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | errors: (none)
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | pilot state: finished 
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | transexitcode: 0
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | exeerrorcode: 0
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | exeerrordiag: 
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | exitcode: 0
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | exitmsg: OK
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | cpuconsumptiontime: 14849 s
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | nevents: 400
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | neventsw: 0
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | pid: 1002534
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | pgrp: 1002534
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | corecount: 12
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | event service: False
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | sizes: {0: 2348806, 1: 2349068, 10: 2349096, 1403: 2382781, 1405: 2382919}
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | --------------------------------------------------
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | 
[2025-10-12 10:24:44] 2025-10-12 14:24:12,055 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,065 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,065 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:24:44] 2025-10-12 14:24:12,065 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,065 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:24:44] 2025-10-12 14:24:12,065 | INFO     | job 6839822855 has completed (purged errors)
[2025-10-12 10:24:44] 2025-10-12 14:24:12,065 | INFO     | overall cleanup function is called
[2025-10-12 10:24:44] 2025-10-12 14:24:13,071 | INFO     | --- collectZombieJob: --- 10, [1002534]
[2025-10-12 10:24:44] 2025-10-12 14:24:13,071 | INFO     | zombie collector waiting for pid 1002534
[2025-10-12 10:24:44] 2025-10-12 14:24:13,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:24:44] 2025-10-12 14:24:13,071 | INFO     | collected zombie processes
[2025-10-12 10:24:44] 2025-10-12 14:24:13,071 | INFO     | will attempt to kill all subprocesses of pid=1002534
[2025-10-12 10:24:44] 2025-10-12 14:24:13,136 | INFO     | process IDs to be killed: [1002534] (in reverse order)
[2025-10-12 10:24:44] 2025-10-12 14:24:13,163 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:24:44] 2025-10-12 14:24:13,163 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:24:44] 2025-10-12 14:24:13,165 | INFO     | did not find any defunct processes belonging to 1002534
[2025-10-12 10:24:44] 2025-10-12 14:24:13,167 | INFO     | did not find any defunct processes belonging to 1002534
[2025-10-12 10:24:44] 2025-10-12 14:24:13,167 | INFO     | ready for new job
[2025-10-12 10:24:44] 2025-10-12 14:24:13,167 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:24:44] 2025-10-12 14:24:13,168 | INFO     | ***************************************
[2025-10-12 10:24:44] 2025-10-12 14:24:13,168 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:24:44] 2025-10-12 14:24:13,168 | INFO     | ***************************************
[2025-10-12 10:24:44] 2025-10-12 14:24:13,168 | INFO     | 
[2025-10-12 10:24:44] 2025-10-12 14:24:13,168 | INFO     | architecture information:
[2025-10-12 10:24:44] 2025-10-12 14:24:13,169 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:24:44] 2025-10-12 14:24:13,175 | INFO     | cat /etc/os-release:
[2025-10-12 10:24:44] NAME="CentOS Linux"
[2025-10-12 10:24:44] VERSION="7 (Core)"
[2025-10-12 10:24:44] ID="centos"
[2025-10-12 10:24:44] ID_LIKE="rhel fedora"
[2025-10-12 10:24:44] VERSION_ID="7"
[2025-10-12 10:24:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:24:44] ANSI_COLOR="0;31"
[2025-10-12 10:24:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:24:44] HOME_URL="https://www.centos.org/"
[2025-10-12 10:24:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:24:44] 
[2025-10-12 10:24:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:24:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:24:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:24:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:24:44] 
[2025-10-12 10:24:44] 2025-10-12 14:24:13,175 | INFO     | ***************************************
[2025-10-12 10:24:44] 2025-10-12 14:24:13,544 | WARNING  | process 1002534 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 10:24:44] 2025-10-12 14:24:13,597 | INFO     | using path: /var/lib/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:24:44] 2025-10-12 14:24:13,598 | INFO     | using path: /var/lib/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:24:44] 2025-10-12 14:24:13,598 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 10:24:44] 2025-10-12 14:24:13,598 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 10:24:44] 2025-10-12 14:24:13,598 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/slots/0/PanDA_Pilot-6839822855/payload.stdout) since it has not been created yet
[2025-10-12 10:24:44] 2025-10-12 14:24:13,598 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 10:24:44] 2025-10-12 14:24:13,606 | INFO     | sufficient remaining disk space (1819462860800 B)
[2025-10-12 10:24:44] 2025-10-12 14:24:13,606 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-10-12 10:24:44] 2025-10-12 14:24:13,606 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/0/PanDA_Pilot-6839822855/HITS.46676269._075467.pool.root.1 since it does not exist
[2025-10-12 10:24:44] 2025-10-12 14:24:13,671 | INFO     | number of running child processes to parent process 1002534: 1
[2025-10-12 10:24:44] 2025-10-12 14:24:13,671 | INFO     | maximum number of monitored processes: 6
[2025-10-12 10:24:44] 2025-10-12 14:24:13,671 | INFO     | aborting job monitoring since job object (job id=6839822855) has expired
[2025-10-12 10:24:44] 2025-10-12 14:24:13,677 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-10-12 10:24:44] 2025-10-12 14:24:13,685 | INFO     | sufficient remaining disk space (1819462860800 B)
[2025-10-12 10:24:44] 2025-10-12 14:24:13,685 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:24:44] 2025-10-12 14:24:13,685 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:24:44] 2025-10-12 14:24:13,685 | INFO     | update_server=False
[2025-10-12 10:24:44] 2025-10-12 14:24:13,685 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:24:44] 2025-10-12 14:24:13,686 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:24:44] 2025-10-12 14:24:13,686 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:24:44] 2025-10-12 14:24:13,686 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:24:44] 2025-10-12 14:24:13,686 | INFO     | will abort loop
[2025-10-12 10:24:44] 2025-10-12 14:24:13,959 | INFO     | all payload control threads have been joined
[2025-10-12 10:24:44] 2025-10-12 14:24:14,070 | INFO     | all job control threads have been joined
[2025-10-12 10:24:44] 2025-10-12 14:24:14,284 | INFO     | all data control threads have been joined
[2025-10-12 10:24:44] 2025-10-12 14:24:14,691 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:14,692 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:14,693 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:14,964 | INFO     | [payload] control thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:15,072 | INFO     | [job] control thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:15,289 | INFO     | [data] control thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:15,511 | INFO     | job.realtimelogging is not enabled
[2025-10-12 10:24:44] 2025-10-12 14:24:15,528 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:15,603 | INFO     | [job] validate thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:15,654 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:15,690 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:15,694 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:15,787 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:15,808 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:16,136 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:16,517 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:16,683 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:24:44] 2025-10-12 14:24:20,689 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:24:44] 2025-10-12 14:24:36,655 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:24:44] 2025-10-12 14:24:38,333 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126101904066368)>', '<ExcThread(monitor, started 126101397411584)>']
[2025-10-12 10:24:44] 2025-10-12 14:24:43,358 | INFO     | all workflow threads have been joined
[2025-10-12 10:24:44] 2025-10-12 14:24:43,358 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:24:44] 2025-10-12 14:24:43,358 | INFO     | traces error code: 0
[2025-10-12 10:24:44] 2025-10-12 14:24:43,358 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:24:44] 2025-10-12 14:24:44,307 | INFO     | PID=995889 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-12 10:24:44] 2025-10-12 14:24:44,307 | INFO     | .. there are 2 such processes running
[2025-10-12 10:24:44] 2025-10-12 14:24:44,308 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:24:44] 2025-10-12 14:24:44,308 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:24:44] 2025-10-12 14:24:44,308 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:24:44] 2025-10-12 14:24:44,308 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:24:44] 2025-10-12 14:24:44,308 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 10:24:44] 2025-10-12 14:24:44,308 | INFO     | [monitor] control thread has ended
[2025-10-12 10:24:44] 2025-10-12 14:24:44,358 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:24:44] 2025-10-12 14:24:44,360 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:24:44] 2025-10-12 14:24:44,361 [wrapper] pilotpid: 995889
[2025-10-12 10:24:44] 2025-10-12 14:24:44,362 [wrapper] Pilot exit status: 0
[2025-10-12 10:24:44] 2025-10-12 14:24:44,366 [wrapper] pandaids: 6839822855
[2025-10-12 10:24:44] 2025-10-12 14:24:44,384 [wrapper] cleanup supervisor_pilot 1013639 995890
[2025-10-12 10:24:44] 2025-10-12 14:24:44,385 [wrapper] Test setup, not cleaning
[2025-10-12 10:24:44] 2025-10-12 14:24:44,387 [wrapper] apfmon messages muted
[2025-10-12 10:24:44] 2025-10-12 14:24:44,388 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:24:44] 2025-10-12 14:24:44,389 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:24:44]  *** Error codes and diagnostics ***
[2025-10-12 10:24:44]     "exeErrorCode": 0,
[2025-10-12 10:24:44]     "exeErrorDiag": "",
[2025-10-12 10:24:44]     "pilotErrorCode": 0,
[2025-10-12 10:24:44]     "pilotErrorDiag": "",
[2025-10-12 10:24:44]  *** Listing of results directory ***
[2025-10-12 10:24:44] total 409980
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc    557409 Oct 12 05:37 pilot3.tar.gz
[2025-10-12 10:24:44] -rwx------ 1 boinc boinc     36292 Oct 12 05:45 runpilot2-wrapper.sh
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:45 queuedata.json
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc       100 Oct 12 10:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:24:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 10:00 run_atlas
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc       105 Oct 12 10:00 job.xml
[2025-10-12 10:24:44] -rw-r--r-- 2 boinc boinc 223283234 Oct 12 10:00 EVNT.46676267._003594.pool.root.1
[2025-10-12 10:24:44] -rw-r--r-- 2 boinc boinc    569677 Oct 12 10:00 input.tar.gz
[2025-10-12 10:24:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:00 start_atlas.sh
[2025-10-12 10:24:44] drwxrwx--x 2 boinc boinc      4096 Oct 12 10:00 shared
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:00 boinc_setup_complete
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc     11824 Oct 12 10:00 init_data.xml
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc         0 Oct 12 10:00 boinc_lockfile
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc      2549 Oct 12 10:00 pandaJob.out
[2025-10-12 10:24:44] -rw------- 1 boinc boinc    975528 Oct 12 10:00 agis_schedconf.cvmfs.json
[2025-10-12 10:24:44] -rw------- 1 boinc boinc   1560580 Oct 12 10:00 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:24:44] drwx------ 5 boinc boinc      4096 Oct 12 10:00 pilot3
[2025-10-12 10:24:44] -rw------- 1 boinc boinc 191459895 Oct 12 10:23 HITS.46676269._075467.pool.root.1
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc       529 Oct 12 10:24 boinc_task_state.xml
[2025-10-12 10:24:44] -rw------- 1 boinc boinc      1014 Oct 12 10:24 memory_monitor_summary.json
[2025-10-12 10:24:44] -rw------- 1 boinc boinc    332490 Oct 12 10:24 log.46676269._075467.job.log.tgz.1
[2025-10-12 10:24:44] -rw------- 1 boinc boinc      7773 Oct 12 10:24 heartbeat.json
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc      8192 Oct 12 10:24 boinc_mmap_file
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc        27 Oct 12 10:24 wrapper_checkpoint.txt
[2025-10-12 10:24:44] -rw------- 1 boinc boinc       891 Oct 12 10:24 pilotlog.txt
[2025-10-12 10:24:44] -rw------- 1 boinc boinc        95 Oct 12 10:24 pilot_heartbeat.json
[2025-10-12 10:24:44] -rw------- 1 boinc boinc    249715 Oct 12 10:24 log.46676269._075467.job.log.1
[2025-10-12 10:24:44] -rw------- 1 boinc boinc       357 Oct 12 10:24 output.list
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc       620 Oct 12 10:24 runtime_log
[2025-10-12 10:24:44] -rw------- 1 boinc boinc    604160 Oct 12 10:24 result.tar.gz
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc      8741 Oct 12 10:24 runtime_log.err
[2025-10-12 10:24:44] -rw------- 1 boinc boinc       657 Oct 12 10:24 eYBMDmao7R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmWNjNDm3u4lEo.diag
[2025-10-12 10:24:44] -rw-r--r-- 1 boinc boinc     22388 Oct 12 10:24 stderr.txt
[2025-10-12 10:24:44] HITS file was successfully produced:
[2025-10-12 10:24:44] -rw------- 1 boinc boinc 191459895 Oct 12 10:23 shared/HITS.pool.root.1
[2025-10-12 10:24:44]  *** Contents of shared directory: ***
[2025-10-12 10:24:44] total 406204
[2025-10-12 10:24:44] -rw-r--r-- 2 boinc boinc 223283234 Oct 12 10:00 ATLAS.root_0
[2025-10-12 10:24:44] -rw-r--r-- 2 boinc boinc    569677 Oct 12 10:00 input.tar.gz
[2025-10-12 10:24:44] -rw-r--r-- 2 boinc boinc     15120 Oct 12 10:00 start_atlas.sh
[2025-10-12 10:24:44] -rw------- 1 boinc boinc 191459895 Oct 12 10:23 HITS.pool.root.1
[2025-10-12 10:24:44] -rw------- 1 boinc boinc    604160 Oct 12 10:24 result.tar.gz
10:24:46 (992039): run_atlas exited; CPU time 14855.321804
10:24:46 (992039): called boinc_finish(0)

</stderr_txt>
]]>

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