Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:49:59 (24973): wrapper (7.7.26015): starting
09:49:59 (24973): wrapper: running run_atlas (--nthreads 12)
[2025-10-12 09:49:59] Arguments: --nthreads 12
[2025-10-12 09:49:59] Threads: 12
[2025-10-12 09:49:59] Checking for CVMFS
[2025-10-12 09:49:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:49:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:49:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:49:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:49:59] 2.11.2.0 2984 222917 96920 151621 3 57 14494663 20275201 1 130560 1 109875133 99.984 13370497 12624 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 09:49:59] CVMFS is ok
[2025-10-12 09:49:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:49:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:49:59] Further information can be found at the LHC@home message board.
[2025-10-12 09:49:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:49:59] Checking for apptainer binary...
[2025-10-12 09:49:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:49:59] Running /usr/bin/apptainer --version
[2025-10-12 09:49:59] apptainer version 1.3.2-1.el7
[2025-10-12 09:49:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:50:01] c-205-26.aglt2.org
[2025-10-12 09:50:01] apptainer works
[2025-10-12 09:50:01] Set ATHENA_PROC_NUMBER=12
[2025-10-12 09:50:01] Set ATHENA_CORE_NUMBER=12
[2025-10-12 09:50:01] Starting ATLAS job with PandaID=6839821977
[2025-10-12 09:50:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 10:59:29]  *** The last 200 lines of the pilot log: ***
[2025-10-12 10:59:29]  scope=mc23_13p6TeV
[2025-10-12 10:59:29]  status=None
[2025-10-12 10:59:29]  status_code=0
[2025-10-12 10:59:29]  storage_token=
[2025-10-12 10:59:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6839821977/log.46676269._075298.job.log.tgz.1
[2025-10-12 10:59:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/31/log.46676269._075298.job.log.tgz.1
[2025-10-12 10:59:29]  workdir=None
[2025-10-12 10:59:29] ]
[2025-10-12 10:59:29] 2025-10-12 14:58:34,092 | INFO     | transferring file log.46676269._075298.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6839821977/log.46676269._075298.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-12 10:59:29] 2025-10-12 14:58:34,092 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6839821977/log.46676269._075298.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._075298.job
[2025-10-12 10:59:29] 2025-10-12 14:58:34,115 | INFO     | adding to output.list: log.46676269._075298.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/68/31/log.46676269._075298.job.log.tg
[2025-10-12 10:59:29] 2025-10-12 14:58:34,116 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 10:59:29] 2025-10-12 14:58:34,116 | INFO     | summary of transferred files:
[2025-10-12 10:59:29] 2025-10-12 14:58:34,117 | INFO     |  -- lfn=log.46676269._075298.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 10:59:29] 2025-10-12 14:58:34,117 | INFO     | stage-out finished correctly
[2025-10-12 10:59:29] 2025-10-12 14:58:34,201 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 10:59:29] 2025-10-12 14:58:34,280 | INFO     | job 6839821977 has state=finished
[2025-10-12 10:59:29] 2025-10-12 14:58:34,280 | INFO     | preparing for final server update for job 6839821977 in state='finished'
[2025-10-12 10:59:29] 2025-10-12 14:58:34,281 | INFO     | this job has now completed (state=finished)
[2025-10-12 10:59:29] 2025-10-12 14:58:34,281 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 10:59:29] 2025-10-12 14:58:34,281 | INFO     | log transfer has been attempted: DONE
[2025-10-12 10:59:29] 2025-10-12 14:58:34,281 | INFO     | job 6839821977 has finished - writing final server update
[2025-10-12 10:59:29] 2025-10-12 14:58:34,281 | INFO     | total number of processed events: 400 (read)
[2025-10-12 10:59:29] 2025-10-12 14:58:34,282 | INFO     | executing command: lscpu
[2025-10-12 10:59:29] 2025-10-12 14:58:34,309 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 10:59:29] 2025-10-12 14:58:34,613 | INFO     | monitor loop #307: job 0:6839821977 is in state 'finished'
[2025-10-12 10:59:29] 2025-10-12 14:58:34,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:59:29] 2025-10-12 14:58:34,934 | INFO     | time since job start (4098s) is within the limit (172800.0s)
[2025-10-12 10:59:29] 2025-10-12 14:58:36,940 | INFO     | time since job start (4100s) is within the limit (172800.0s)
[2025-10-12 10:59:29] 2025-10-12 14:58:37,116 | INFO     | monitor loop #308: job 0:6839821977 is in state 'finished'
[2025-10-12 10:59:29] 2025-10-12 14:58:37,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:59:29] 2025-10-12 14:58:38,945 | INFO     | time since job start (4102s) is within the limit (172800.0s)
[2025-10-12 10:59:29] 2025-10-12 14:58:39,624 | INFO     | monitor loop #309: job 0:6839821977 is in state 'finished'
[2025-10-12 10:59:29] 2025-10-12 14:58:39,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 10:59:29] 2025-10-12 14:58:40,044 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-12 10:59:29] 2025-10-12 14:58:40,050 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1784.5
[2025-10-12 10:59:29] 2025-10-12 14:58:40,052 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6839821977/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 10:59:29] 2025-10-12 14:58:40,054 | INFO     | extracted standard info from prmon json
[2025-10-12 10:59:29] 2025-10-12 14:58:40,054 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 10:59:29] 2025-10-12 14:58:40,054 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 10:59:29] 2025-10-12 14:58:40,055 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 10:59:29] 2025-10-12 14:58:40,055 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 10:59:29] 2025-10-12 14:58:40,056 | INFO     | fitting pss+swap vs Time
[2025-10-12 10:59:29] 2025-10-12 14:58:40,057 | INFO     | sum of square deviations: 66959395.0
[2025-10-12 10:59:29] 2025-10-12 14:58:40,057 | INFO     | sum of deviations: -2437530354.0
[2025-10-12 10:59:29] 2025-10-12 14:58:40,057 | INFO     | mean x: 1760279149.5
[2025-10-12 10:59:29] 2025-10-12 14:58:40,057 | INFO     | mean y: 2704415.2
[2025-10-12 10:59:29] 2025-10-12 14:58:40,058 | INFO     | -- intersect: 64082343402.67223
[2025-10-12 10:59:29] 2025-10-12 14:58:40,058 | INFO     | intersect: 64082343402.67223
[2025-10-12 10:59:29] 2025-10-12 14:58:40,058 | INFO     | chi2: 0.06091776806435178
[2025-10-12 10:59:29] 2025-10-12 14:58:40,058 | INFO     | -- intersect: 64082343402.67223
[2025-10-12 10:59:29] 2025-10-12 14:58:40,058 | INFO     | current memory leak: -36.40 B/s (using 60 data points, chi2=0.06)
[2025-10-12 10:59:29] 2025-10-12 14:58:40,059 | INFO     | could have reported an average CPU frequency of 2041 MHz (6 samples)
[2025-10-12 10:59:29] 2025-10-12 14:58:40,059 | INFO     | ..............................
[2025-10-12 10:59:29] 2025-10-12 14:58:40,059 | INFO     | . Timing measurements:
[2025-10-12 10:59:29] 2025-10-12 14:58:40,059 | INFO     | . get job = 0 s
[2025-10-12 10:59:29] 2025-10-12 14:58:40,060 | INFO     | . initial setup = 2 s
[2025-10-12 10:59:29] 2025-10-12 14:58:40,060 | INFO     | . payload setup = 7 s
[2025-10-12 10:59:29] 2025-10-12 14:58:40,060 | INFO     | . stage-in = 0 s
[2025-10-12 10:59:29] 2025-10-12 14:58:40,060 | INFO     | . payload execution = 4069 s
[2025-10-12 10:59:29] 2025-10-12 14:58:40,060 | INFO     | . stage-out = 0 s
[2025-10-12 10:59:29] 2025-10-12 14:58:40,060 | INFO     | . log creation = 0 s
[2025-10-12 10:59:29] 2025-10-12 14:58:40,061 | INFO     | ..............................
[2025-10-12 10:59:29] 2025-10-12 14:58:40,143 | INFO     | 
[2025-10-12 10:59:29] 2025-10-12 14:58:40,144 | INFO     | job summary report
[2025-10-12 10:59:29] 2025-10-12 14:58:40,144 | INFO     | --------------------------------------------------
[2025-10-12 10:59:29] 2025-10-12 14:58:40,144 | INFO     | PanDA job id: 6839821977
[2025-10-12 10:59:29] 2025-10-12 14:58:40,144 | INFO     | task id: 46676269
[2025-10-12 10:59:29] 2025-10-12 14:58:40,144 | INFO     | errors: (none)
[2025-10-12 10:59:29] 2025-10-12 14:58:40,145 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 10:59:29] 2025-10-12 14:58:40,145 | INFO     | pilot state: finished 
[2025-10-12 10:59:29] 2025-10-12 14:58:40,145 | INFO     | transexitcode: 0
[2025-10-12 10:59:29] 2025-10-12 14:58:40,145 | INFO     | exeerrorcode: 0
[2025-10-12 10:59:29] 2025-10-12 14:58:40,145 | INFO     | exeerrordiag: 
[2025-10-12 10:59:29] 2025-10-12 14:58:40,146 | INFO     | exitcode: 0
[2025-10-12 10:59:29] 2025-10-12 14:58:40,146 | INFO     | exitmsg: OK
[2025-10-12 10:59:29] 2025-10-12 14:58:40,146 | INFO     | cpuconsumptiontime: 44055 s
[2025-10-12 10:59:29] 2025-10-12 14:58:40,146 | INFO     | nevents: 400
[2025-10-12 10:59:29] 2025-10-12 14:58:40,146 | INFO     | neventsw: 0
[2025-10-12 10:59:29] 2025-10-12 14:58:40,146 | INFO     | pid: 3945
[2025-10-12 10:59:29] 2025-10-12 14:58:40,146 | INFO     | pgrp: 3945
[2025-10-12 10:59:29] 2025-10-12 14:58:40,147 | INFO     | corecount: 12
[2025-10-12 10:59:29] 2025-10-12 14:58:40,147 | INFO     | event service: False
[2025-10-12 10:59:29] 2025-10-12 14:58:40,147 | INFO     | sizes: {0: 2348630, 1: 2348885, 6: 2349147, 12: 2349175, 4080: 2375043, 4082: 2384225, 4088: 2384363}
[2025-10-12 10:59:29] 2025-10-12 14:58:40,147 | INFO     | --------------------------------------------------
[2025-10-12 10:59:29] 2025-10-12 14:58:40,147 | INFO     | 
[2025-10-12 10:59:29] 2025-10-12 14:58:40,147 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 10:59:29] 2025-10-12 14:58:40,166 | INFO     | PID=29870 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 10:59:29] 2025-10-12 14:58:40,169 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,169 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,169 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,169 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,170 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,170 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,170 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,170 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,170 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,170 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,170 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,171 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,171 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,171 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,171 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,172 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 10:59:29] 2025-10-12 14:58:40,172 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,172 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 10:59:29] 2025-10-12 14:58:40,172 | INFO     | job 6839821977 has completed (purged errors)
[2025-10-12 10:59:29] 2025-10-12 14:58:40,172 | INFO     | overall cleanup function is called
[2025-10-12 10:59:29] 2025-10-12 14:58:41,180 | INFO     | --- collectZombieJob: --- 10, [3945]
[2025-10-12 10:59:29] 2025-10-12 14:58:41,181 | INFO     | zombie collector waiting for pid 3945
[2025-10-12 10:59:29] 2025-10-12 14:58:41,181 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 10:59:29] 2025-10-12 14:58:41,181 | INFO     | collected zombie processes
[2025-10-12 10:59:29] 2025-10-12 14:58:41,181 | INFO     | will attempt to kill all subprocesses of pid=3945
[2025-10-12 10:59:29] 2025-10-12 14:58:41,271 | INFO     | process IDs to be killed: [3945] (in reverse order)
[2025-10-12 10:59:29] 2025-10-12 14:58:41,321 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 10:59:29] 2025-10-12 14:58:41,322 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 10:59:29] 2025-10-12 14:58:41,326 | INFO     | did not find any defunct processes belonging to 3945
[2025-10-12 10:59:29] 2025-10-12 14:58:41,328 | INFO     | did not find any defunct processes belonging to 3945
[2025-10-12 10:59:29] 2025-10-12 14:58:41,328 | INFO     | ready for new job
[2025-10-12 10:59:29] 2025-10-12 14:58:41,328 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 10:59:29] 2025-10-12 14:58:41,329 | INFO     | ***************************************
[2025-10-12 10:59:29] 2025-10-12 14:58:41,329 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 10:59:29] 2025-10-12 14:58:41,329 | INFO     | ***************************************
[2025-10-12 10:59:29] 2025-10-12 14:58:41,329 | INFO     | 
[2025-10-12 10:59:29] 2025-10-12 14:58:41,330 | INFO     | architecture information:
[2025-10-12 10:59:29] 2025-10-12 14:58:41,330 | INFO     | executing command: cat /etc/os-release
[2025-10-12 10:59:29] 2025-10-12 14:58:41,343 | INFO     | cat /etc/os-release:
[2025-10-12 10:59:29] NAME="CentOS Linux"
[2025-10-12 10:59:29] VERSION="7 (Core)"
[2025-10-12 10:59:29] ID="centos"
[2025-10-12 10:59:29] ID_LIKE="rhel fedora"
[2025-10-12 10:59:29] VERSION_ID="7"
[2025-10-12 10:59:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 10:59:29] ANSI_COLOR="0;31"
[2025-10-12 10:59:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 10:59:29] HOME_URL="https://www.centos.org/"
[2025-10-12 10:59:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 10:59:29] 
[2025-10-12 10:59:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 10:59:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 10:59:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 10:59:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 10:59:29] 
[2025-10-12 10:59:29] 2025-10-12 14:58:41,343 | INFO     | ***************************************
[2025-10-12 10:59:29] 2025-10-12 14:58:41,846 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 10:59:29] 2025-10-12 14:58:41,863 | INFO     | sufficient remaining disk space (29379002368 B)
[2025-10-12 10:59:29] 2025-10-12 14:58:41,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 10:59:29] 2025-10-12 14:58:41,863 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 10:59:29] 2025-10-12 14:58:41,863 | INFO     | update_server=False
[2025-10-12 10:59:29] 2025-10-12 14:58:41,864 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 10:59:29] 2025-10-12 14:58:41,864 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:59:29] 2025-10-12 14:58:42,126 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 10:59:29] 2025-10-12 14:58:42,127 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 10:59:29] 2025-10-12 14:58:42,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 10:59:29] 2025-10-12 14:58:42,135 | INFO     | will abort loop
[2025-10-12 10:59:29] 2025-10-12 14:58:42,167 | INFO     | all data control threads have been joined
[2025-10-12 10:59:29] 2025-10-12 14:58:42,211 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 10:59:29] 2025-10-12 14:58:42,229 | INFO     | all job control threads have been joined
[2025-10-12 10:59:29] 2025-10-12 14:58:42,755 | INFO     | all payload control threads have been joined
[2025-10-12 10:59:29] 2025-10-12 14:58:42,869 | INFO     | [job] retrieve thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:42,870 | INFO     | [job] queue monitor thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,024 | INFO     | [payload] validate_post thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,136 | INFO     | [job] job monitor thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,173 | INFO     | [data] control thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,235 | INFO     | [job] control thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,406 | INFO     | [payload] failed_post thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,423 | INFO     | [job] validate thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,670 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,757 | INFO     | [payload] control thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,843 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:43,919 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:44,162 | INFO     | [data] copytool_in thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:44,217 | INFO     | [data] copytool_out thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:58:44,788 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 10:59:29] 2025-10-12 14:58:48,794 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 10:59:29] 2025-10-12 14:59:12,362 | INFO     | PID=29870 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-12 10:59:29] 2025-10-12 14:59:12,362 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 10:59:29] 2025-10-12 14:59:12,362 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 10:59:29] 2025-10-12 14:59:12,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 10:59:29] 2025-10-12 14:59:22,378 | INFO     | [monitor] cgroup control has ended
[2025-10-12 10:59:29] 2025-10-12 14:59:24,369 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139932220299072)>', '<ExcThread(monitor, started 139931485718272)>']
[2025-10-12 10:59:29] 2025-10-12 14:59:24,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 10:59:29] 2025-10-12 14:59:24,418 | INFO     | [monitor] control thread has ended
[2025-10-12 10:59:29] 2025-10-12 14:59:29,385 | INFO     | all workflow threads have been joined
[2025-10-12 10:59:29] 2025-10-12 14:59:29,386 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 10:59:29] 2025-10-12 14:59:29,386 | INFO     | traces error code: 0
[2025-10-12 10:59:29] 2025-10-12 14:59:29,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 10:59:29] 2025-10-12 14:59:29,466 [wrapper] ==== pilot stdout END ====
[2025-10-12 10:59:29] 2025-10-12 14:59:29,470 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 10:59:29] 2025-10-12 14:59:29,474 [wrapper] pilotpid: 29870
[2025-10-12 10:59:29] 2025-10-12 14:59:29,478 [wrapper] Pilot exit status: 0
[2025-10-12 10:59:29] 2025-10-12 14:59:29,494 [wrapper] pandaids: 6839821977
[2025-10-12 10:59:29] 2025-10-12 14:59:29,541 [wrapper] cleanup supervisor_pilot  7308 29871
[2025-10-12 10:59:29] 2025-10-12 14:59:29,545 [wrapper] Test setup, not cleaning
[2025-10-12 10:59:29] 2025-10-12 14:59:29,549 [wrapper] apfmon messages muted
[2025-10-12 10:59:29] 2025-10-12 14:59:29,553 [wrapper] ==== wrapper stdout END ====
[2025-10-12 10:59:29] 2025-10-12 14:59:29,557 [wrapper] ==== wrapper stderr END ====
[2025-10-12 10:59:29]  *** Error codes and diagnostics ***
[2025-10-12 10:59:29]     "exeErrorCode": 0,
[2025-10-12 10:59:29]     "exeErrorDiag": "",
[2025-10-12 10:59:29]     "pilotErrorCode": 0,
[2025-10-12 10:59:29]     "pilotErrorDiag": "",
[2025-10-12 10:59:29]  *** Listing of results directory ***
[2025-10-12 10:59:29] total 399700
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 05:04 pilot3.tar.gz
[2025-10-12 10:59:29] -rwx------ 1 boincer umatlas     36292 Oct 12 05:30 runpilot2-wrapper.sh
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 05:30 queuedata.json
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas       100 Oct 12 09:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 10:59:29] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 09:49 run_atlas
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas       105 Oct 12 09:49 job.xml
[2025-10-12 10:59:29] -rw-r--r-- 2 boincer umatlas 218091300 Oct 12 09:49 EVNT.46676267._003572.pool.root.1
[2025-10-12 10:59:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 09:49 start_atlas.sh
[2025-10-12 10:59:29] drwxrwx--x 2 boincer umatlas      4096 Oct 12 09:49 shared
[2025-10-12 10:59:29] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 09:49 input.tar.gz
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas         0 Oct 12 09:49 boinc_lockfile
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 09:50 pandaJob.out
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas    975528 Oct 12 09:50 agis_schedconf.cvmfs.json
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas   1560580 Oct 12 09:50 agis_ddmendpoints.agis.ALL.json
[2025-10-12 10:59:29] drwx------ 5 boincer umatlas      4096 Oct 12 09:50 pilot3
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas 185335239 Oct 12 10:58 HITS.46676269._075298.pool.root.1
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas       529 Oct 12 10:58 boinc_task_state.xml
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas      1049 Oct 12 10:58 memory_monitor_summary.json
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas    381346 Oct 12 10:58 log.46676269._075298.job.log.tgz.1
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas      7854 Oct 12 10:58 heartbeat.json
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas      5953 Oct 12 10:58 init_data.xml
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas        95 Oct 12 10:59 pilot_heartbeat.json
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 10:59 boinc_mmap_file
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas        27 Oct 12 10:59 wrapper_checkpoint.txt
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas      4932 Oct 12 10:59 pilotlog.txt
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas    600155 Oct 12 10:59 log.46676269._075298.job.log.1
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas       357 Oct 12 10:59 output.list
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas       620 Oct 12 10:59 runtime_log
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas   1003520 Oct 12 10:59 result.tar.gz
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas      8705 Oct 12 10:59 runtime_log.err
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas       659 Oct 12 10:59 AFDNDmja7R8n9Rq4apOajLDm4fhM0noT9bVof3QYDmkZTMDmxVi41m.diag
[2025-10-12 10:59:29] -rw-r--r-- 1 boincer umatlas     21984 Oct 12 10:59 stderr.txt
[2025-10-12 10:59:29] HITS file was successfully produced:
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas 185335239 Oct 12 10:58 shared/HITS.pool.root.1
[2025-10-12 10:59:29]  *** Contents of shared directory: ***
[2025-10-12 10:59:29] total 395532
[2025-10-12 10:59:29] -rw-r--r-- 2 boincer umatlas 218091300 Oct 12 09:49 ATLAS.root_0
[2025-10-12 10:59:29] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 09:49 start_atlas.sh
[2025-10-12 10:59:29] -rw-r--r-- 2 boincer umatlas    569679 Oct 12 09:49 input.tar.gz
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas 185335239 Oct 12 10:58 HITS.pool.root.1
[2025-10-12 10:59:29] -rw------- 1 boincer umatlas   1003520 Oct 12 10:59 result.tar.gz
10:59:31 (24973): run_atlas exited; CPU time 44023.360806
10:59:31 (24973): called boinc_finish(0)

</stderr_txt>
]]>

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