Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:00:36 (2404420): wrapper (7.7.26015): starting
10:00:36 (2404420): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 10:00:36] Arguments: --nthreads 8
[2025-10-12 10:00:36] Threads: 8
[2025-10-12 10:00:36] Checking for CVMFS
[2025-10-12 10:00:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 10:00:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 10:00:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 10:00:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 10:00:37] 2.13.2.0 3269412 35819 377788 151621 3 415 33022823 40960000 54354 16776704 0 459334571 99.846 184628872 36796 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 10:00:37] CVMFS is ok
[2025-10-12 10:00:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 10:00:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 10:00:37] Further information can be found at the LHC@home message board.
[2025-10-12 10:00:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 10:00:37] Checking for apptainer binary...
[2025-10-12 10:00:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 10:00:37] Running /usr/bin/apptainer --version
[2025-10-12 10:00:37] apptainer version 1.4.3-1.el9
[2025-10-12 10:00:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 10:00:37] c8-16-2.aglt2.org
[2025-10-12 10:00:37] apptainer works
[2025-10-12 10:00:37] Set ATHENA_PROC_NUMBER=8
[2025-10-12 10:00:37] Set ATHENA_CORE_NUMBER=8
[2025-10-12 10:00:37] Starting ATLAS job with PandaID=6839588738
[2025-10-12 10:00:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:14:14]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:14:14] 2025-10-12 15:13:07,642 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-12 11:14:14] 2025-10-12 15:13:07,642 | INFO     | summary of transferred files:
[2025-10-12 11:14:14] 2025-10-12 15:13:07,642 | INFO     |  -- lfn=log.46676269._071930.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 11:14:14] 2025-10-12 15:13:07,642 | INFO     | stage-out finished correctly
[2025-10-12 11:14:14] 2025-10-12 15:13:07,664 | INFO     | time since job start (4326s) is within the limit (172800.0s)
[2025-10-12 11:14:14] 2025-10-12 15:13:08,956 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 11:14:14] 2025-10-12 15:13:09,684 | INFO     | time since job start (4328s) is within the limit (172800.0s)
[2025-10-12 11:14:14] 2025-10-12 15:13:11,296 | INFO     | job 6839588738 has state=finished
[2025-10-12 11:14:14] 2025-10-12 15:13:11,298 | INFO     | preparing for final server update for job 6839588738 in state='finished'
[2025-10-12 11:14:14] 2025-10-12 15:13:11,299 | INFO     | this job has now completed (state=finished)
[2025-10-12 11:14:14] 2025-10-12 15:13:11,300 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 11:14:14] 2025-10-12 15:13:11,300 | INFO     | log transfer has been attempted: DONE
[2025-10-12 11:14:14] 2025-10-12 15:13:11,300 | INFO     | job 6839588738 has finished - writing final server update
[2025-10-12 11:14:14] 2025-10-12 15:13:11,300 | INFO     | total number of processed events: 400 (read)
[2025-10-12 11:14:14] 2025-10-12 15:13:11,300 | INFO     | executing command: lscpu
[2025-10-12 11:14:14] 2025-10-12 15:13:11,394 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 11:14:14] 2025-10-12 15:13:11,691 | INFO     | time since job start (4330s) is within the limit (172800.0s)
[2025-10-12 11:14:14] 2025-10-12 15:13:11,879 | WARNING  | process 2431926 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 11:14:14] 2025-10-12 15:13:11,880 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6839588738/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:14:14] 2025-10-12 15:13:12,989 | INFO     | number of running child processes to parent process 2431926: 1
[2025-10-12 11:14:14] 2025-10-12 15:13:12,992 | INFO     | maximum number of monitored processes: 6
[2025-10-12 11:14:14] 2025-10-12 15:13:13,817 | INFO     | PID=2410428 has CPU usage=18.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-12 11:14:14] 2025-10-12 15:13:13,817 | INFO     | .. there are 92 such processes running
[2025-10-12 11:14:14] 2025-10-12 15:13:14,819 | INFO     | time since job start (4333s) is within the limit (172800.0s)
[2025-10-12 11:14:14] 2025-10-12 15:13:15,497 | INFO     | monitor loop #274: job 0:6839588738 is in state 'finished'
[2025-10-12 11:14:14] 2025-10-12 15:13:15,497 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:14:14] 2025-10-12 15:13:16,826 | INFO     | time since job start (4335s) is within the limit (172800.0s)
[2025-10-12 11:14:14] 2025-10-12 15:13:18,006 | INFO     | monitor loop #275: job 0:6839588738 is in state 'finished'
[2025-10-12 11:14:14] 2025-10-12 15:13:18,011 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:14:14] 2025-10-12 15:13:18,832 | INFO     | time since job start (4337s) is within the limit (172800.0s)
[2025-10-12 11:14:14] 2025-10-12 15:13:20,515 | INFO     | monitor loop #276: job 0:6839588738 is in state 'finished'
[2025-10-12 11:14:14] 2025-10-12 15:13:20,515 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-12 11:14:14] 2025-10-12 15:13:20,839 | INFO     | time since job start (4339s) is within the limit (172800.0s)
[2025-10-12 11:14:14] 2025-10-12 15:13:21,894 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 11:14:14] 2025-10-12 15:13:21,903 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3787.0976328124993
[2025-10-12 11:14:14] 2025-10-12 15:13:21,928 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6839588738/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 11:14:14] 2025-10-12 15:13:21,933 | INFO     | extracted standard info from prmon json
[2025-10-12 11:14:14] 2025-10-12 15:13:21,933 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:14:14] 2025-10-12 15:13:21,933 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:14:14] 2025-10-12 15:13:21,933 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:14:14] 2025-10-12 15:13:21,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:14:14] 2025-10-12 15:13:21,934 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | sum of square deviations: 77515872.0
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | sum of deviations: 934165589.9999999
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | mean x: 1760279908.0
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | mean y: 2166773.746031746
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | -- intersect: -21211461821.2076
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | intersect: -21211461821.2076
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | chi2: 0.01167747288676553
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | -- intersect: -21211461821.2076
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | current memory leak: 12.05 B/s (using 63 data points, chi2=0.01)
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | could have reported an average CPU frequency of 3794 MHz (6 samples)
[2025-10-12 11:14:14] 2025-10-12 15:13:21,935 | INFO     | ..............................
[2025-10-12 11:14:14] 2025-10-12 15:13:21,936 | INFO     | . Timing measurements:
[2025-10-12 11:14:14] 2025-10-12 15:13:21,936 | INFO     | . get job = 0 s
[2025-10-12 11:14:14] 2025-10-12 15:13:21,936 | INFO     | . initial setup = 3 s
[2025-10-12 11:14:14] 2025-10-12 15:13:21,936 | INFO     | . payload setup = 14 s
[2025-10-12 11:14:14] 2025-10-12 15:13:21,936 | INFO     | . stage-in = 0 s
[2025-10-12 11:14:14] 2025-10-12 15:13:21,936 | INFO     | . payload execution = 4283 s
[2025-10-12 11:14:14] 2025-10-12 15:13:21,936 | INFO     | . stage-out = 0 s
[2025-10-12 11:14:14] 2025-10-12 15:13:21,936 | INFO     | . log creation = 0 s
[2025-10-12 11:14:14] 2025-10-12 15:13:21,936 | INFO     | ..............................
[2025-10-12 11:14:14] 2025-10-12 15:13:22,048 | INFO     | 
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | job summary report
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | --------------------------------------------------
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | PanDA job id: 6839588738
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | task id: 46676269
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | errors: (none)
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | pilot state: finished 
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | transexitcode: 0
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | exeerrorcode: 0
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | exeerrordiag: 
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | exitcode: 0
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | exitmsg: OK
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | cpuconsumptiontime: 22759 s
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | nevents: 400
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | neventsw: 0
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | pid: 2431926
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | pgrp: 2431926
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | corecount: 8
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | event service: False
[2025-10-12 11:14:14] 2025-10-12 15:13:22,049 | INFO     | sizes: {0: 2348635, 1: 2348834, 10: 2349096, 11: 2349124, 4301: 2375347, 4302: 2375346, 4304: 2384528, 4305: 2384584, 4318: 2384778}
[2025-10-12 11:14:14] 2025-10-12 15:13:22,057 | INFO     | --------------------------------------------------
[2025-10-12 11:14:14] 2025-10-12 15:13:22,057 | INFO     | 
[2025-10-12 11:14:14] 2025-10-12 15:13:22,057 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-12 11:14:14] 2025-10-12 15:13:22,085 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,085 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,085 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | job 6839588738 has completed (purged errors)
[2025-10-12 11:14:14] 2025-10-12 15:13:22,086 | INFO     | overall cleanup function is called
[2025-10-12 11:14:14] 2025-10-12 15:13:23,099 | INFO     | --- collectZombieJob: --- 10, [2431926]
[2025-10-12 11:14:14] 2025-10-12 15:13:23,099 | INFO     | zombie collector waiting for pid 2431926
[2025-10-12 11:14:14] 2025-10-12 15:13:23,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:14:14] 2025-10-12 15:13:23,099 | INFO     | collected zombie processes
[2025-10-12 11:14:14] 2025-10-12 15:13:23,099 | INFO     | will attempt to kill all subprocesses of pid=2431926
[2025-10-12 11:14:14] 2025-10-12 15:13:24,295 | INFO     | process IDs to be killed: [2431926] (in reverse order)
[2025-10-12 11:14:14] 2025-10-12 15:13:24,566 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:14:14] 2025-10-12 15:13:24,566 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:14:14] 2025-10-12 15:13:24,605 | INFO     | did not find any defunct processes belonging to 2431926
[2025-10-12 11:14:14] 2025-10-12 15:13:24,642 | INFO     | did not find any defunct processes belonging to 2431926
[2025-10-12 11:14:14] 2025-10-12 15:13:24,642 | INFO     | ready for new job
[2025-10-12 11:14:14] 2025-10-12 15:13:24,642 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:14:14] 2025-10-12 15:13:24,644 | INFO     | ***************************************
[2025-10-12 11:14:14] 2025-10-12 15:13:24,644 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:14:14] 2025-10-12 15:13:24,644 | INFO     | ***************************************
[2025-10-12 11:14:14] 2025-10-12 15:13:24,644 | INFO     | 
[2025-10-12 11:14:14] 2025-10-12 15:13:24,658 | INFO     | architecture information:
[2025-10-12 11:14:14] 2025-10-12 15:13:24,664 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:14:14] 2025-10-12 15:13:24,690 | INFO     | cat /etc/os-release:
[2025-10-12 11:14:14] NAME="CentOS Linux"
[2025-10-12 11:14:14] VERSION="7 (Core)"
[2025-10-12 11:14:14] ID="centos"
[2025-10-12 11:14:14] ID_LIKE="rhel fedora"
[2025-10-12 11:14:14] VERSION_ID="7"
[2025-10-12 11:14:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:14:14] ANSI_COLOR="0;31"
[2025-10-12 11:14:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:14:14] HOME_URL="https://www.centos.org/"
[2025-10-12 11:14:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:14:14] 
[2025-10-12 11:14:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:14:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:14:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:14:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:14:14] 
[2025-10-12 11:14:14] 2025-10-12 15:13:24,690 | INFO     | ***************************************
[2025-10-12 11:14:14] 2025-10-12 15:13:25,194 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-12 11:14:14] 2025-10-12 15:13:25,241 | INFO     | sufficient remaining disk space (166958465024 B)
[2025-10-12 11:14:14] 2025-10-12 15:13:25,241 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:14:14] 2025-10-12 15:13:25,241 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:14:14] 2025-10-12 15:13:25,241 | INFO     | update_server=False
[2025-10-12 11:14:14] 2025-10-12 15:13:25,241 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:14:14] 2025-10-12 15:13:25,540 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 11:14:14] 2025-10-12 15:13:25,540 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 11:14:14] 2025-10-12 15:13:25,540 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:14:14] 2025-10-12 15:13:25,540 | INFO     | will abort loop
[2025-10-12 11:14:14] 2025-10-12 15:13:25,565 | INFO     | all data control threads have been joined
[2025-10-12 11:14:14] 2025-10-12 15:13:25,780 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:14:14] 2025-10-12 15:13:26,211 | INFO     | all job control threads have been joined
[2025-10-12 11:14:14] 2025-10-12 15:13:26,246 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:26,546 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:26,571 | INFO     | [data] control thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:26,571 | INFO     | all payload control threads have been joined
[2025-10-12 11:14:14] 2025-10-12 15:13:26,680 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:27,069 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:14:14] 2025-10-12 15:13:27,091 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:27,216 | INFO     | [job] control thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:27,283 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:27,549 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:27,577 | INFO     | [payload] control thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:27,702 | INFO     | [job] validate thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:27,716 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:27,735 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:27,789 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:28,075 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:28,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:14:14] 2025-10-12 15:13:32,599 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:35,820 | INFO     | job.realtimelogging is not enabled
[2025-10-12 11:14:14] 2025-10-12 15:13:36,826 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:14:14] 2025-10-12 15:13:55,120 | INFO     | PID=2410428 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 11:14:14] 2025-10-12 15:13:55,120 | INFO     | .. there are 92 such processes running
[2025-10-12 11:14:14] 2025-10-12 15:13:55,120 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:14:14] 2025-10-12 15:13:55,122 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:14:14] 2025-10-12 15:13:55,122 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:14:14] 2025-10-12 15:14:08,146 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:14:14] 2025-10-12 15:14:09,349 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140474265597760)>', '<ExcThread(monitor, started 140473364616960)>']
[2025-10-12 11:14:14] 2025-10-12 15:14:10,210 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:14:14] 2025-10-12 15:14:10,210 | INFO     | [monitor] control thread has ended
[2025-10-12 11:14:14] 2025-10-12 15:14:14,375 | INFO     | all workflow threads have been joined
[2025-10-12 11:14:14] 2025-10-12 15:14:14,375 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:14:14] 2025-10-12 15:14:14,375 | INFO     | traces error code: 0
[2025-10-12 11:14:14] 2025-10-12 15:14:14,375 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:14:14] 2025-10-12 15:14:14,545 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:14:14] 2025-10-12 15:14:14,549 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:14:14] 2025-10-12 15:14:14,553 [wrapper] pilotpid: 2410428
[2025-10-12 11:14:14] 2025-10-12 15:14:14,557 [wrapper] Pilot exit status: 0
[2025-10-12 11:14:14] 2025-10-12 15:14:14,572 [wrapper] pandaids: 6839588738
[2025-10-12 11:14:14] 2025-10-12 15:14:14,777 [wrapper] cleanup supervisor_pilot 3112268 2410429
[2025-10-12 11:14:14] 2025-10-12 15:14:14,782 [wrapper] Test setup, not cleaning
[2025-10-12 11:14:14] 2025-10-12 15:14:14,785 [wrapper] apfmon messages muted
[2025-10-12 11:14:14] 2025-10-12 15:14:14,789 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:14:14] 2025-10-12 15:14:14,792 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:14:14]  *** Error codes and diagnostics ***
[2025-10-12 11:14:14]     "exeErrorCode": 0,
[2025-10-12 11:14:14]     "exeErrorDiag": "",
[2025-10-12 11:14:14]     "pilotErrorCode": 0,
[2025-10-12 11:14:14]     "pilotErrorDiag": "",
[2025-10-12 11:14:14]  *** Listing of results directory ***
[2025-10-12 11:14:14] total 418324
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 01:26 pilot3.tar.gz
[2025-10-12 11:14:14] -rwx------. 1 boincer umatlas     36292 Oct 12 01:29 runpilot2-wrapper.sh
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 01:29 queuedata.json
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas       100 Oct 12 10:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:14:14] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 10:00 run_atlas
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas       105 Oct 12 10:00 job.xml
[2025-10-12 11:14:14] -rw-r--r--. 2 boincer umatlas 222849792 Oct 12 10:00 EVNT.46676267._001376.pool.root.1
[2025-10-12 11:14:14] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 10:00 start_atlas.sh
[2025-10-12 11:14:14] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 10:00 shared
[2025-10-12 11:14:14] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 10:00 input.tar.gz
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas         0 Oct 12 10:00 boinc_lockfile
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas      2549 Oct 12 10:00 pandaJob.out
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas    975528 Oct 12 10:00 agis_schedconf.cvmfs.json
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas   1560580 Oct 12 10:00 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:14:14] drwx------. 5 boincer umatlas      4096 Oct 12 10:01 pilot3
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas      7161 Oct 12 11:09 init_data.xml
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas       530 Oct 12 11:12 boinc_task_state.xml
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas 199764734 Oct 12 11:12 HITS.46676269._071930.pool.root.1
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas      1036 Oct 12 11:13 memory_monitor_summary.json
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas    335326 Oct 12 11:13 log.46676269._071930.job.log.tgz.1
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas        95 Oct 12 11:13 pilot_heartbeat.json
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas      7779 Oct 12 11:13 heartbeat.json
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas      5083 Oct 12 11:14 pilotlog.txt
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 11:14 boinc_mmap_file
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas        27 Oct 12 11:14 wrapper_checkpoint.txt
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas    592337 Oct 12 11:14 log.46676269._071930.job.log.1
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas       357 Oct 12 11:14 output.list
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas       620 Oct 12 11:14 runtime_log
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas    942080 Oct 12 11:14 result.tar.gz
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas      8698 Oct 12 11:14 runtime_log.err
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas       650 Oct 12 11:14 HorKDmwo3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmakiNDmUZKyFn.diag
[2025-10-12 11:14:14] -rw-r--r--. 1 boincer umatlas     22244 Oct 12 11:14 stderr.txt
[2025-10-12 11:14:14] HITS file was successfully produced:
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas 199764734 Oct 12 11:12 shared/HITS.pool.root.1
[2025-10-12 11:14:14]  *** Contents of shared directory: ***
[2025-10-12 11:14:14] total 414212
[2025-10-12 11:14:14] -rw-r--r--. 2 boincer umatlas 222849792 Oct 12 10:00 ATLAS.root_0
[2025-10-12 11:14:14] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 10:00 start_atlas.sh
[2025-10-12 11:14:14] -rw-r--r--. 2 boincer umatlas    569678 Oct 12 10:00 input.tar.gz
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas 199764734 Oct 12 11:12 HITS.pool.root.1
[2025-10-12 11:14:14] -rw-------. 1 boincer umatlas    942080 Oct 12 11:14 result.tar.gz
11:14:16 (2404420): run_atlas exited; CPU time 22910.059184
11:14:16 (2404420): called boinc_finish(0)

</stderr_txt>
]]>

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