Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:20:27 (3622667): wrapper (7.7.26015): starting
01:20:27 (3622667): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 01:20:27] Arguments: --nthreads 4
[2025-10-13 01:20:27] Threads: 4
[2025-10-13 01:20:27] Checking for CVMFS
[2025-10-13 01:20:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:20:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:20:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:20:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:20:27] 2.9.2.0 1861142 4853 97412 151641 0 57 23168321 36864000 0 130560 0 4451724 99.992 174748 981 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 01:20:27] CVMFS is ok
[2025-10-13 01:20:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:20:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:20:27] Further information can be found at the LHC@home message board.
[2025-10-13 01:20:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:20:27] Checking for apptainer binary...
[2025-10-13 01:20:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:20:27] Running /usr/bin/apptainer --version
[2025-10-13 01:20:27] apptainer version 1.4.1-1.1
[2025-10-13 01:20:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:20:27] thA319
[2025-10-13 01:20:27] apptainer works
[2025-10-13 01:20:27] Set ATHENA_PROC_NUMBER=4
[2025-10-13 01:20:27] Set ATHENA_CORE_NUMBER=4
[2025-10-13 01:20:27] Starting ATLAS job with PandaID=6839319320
[2025-10-13 01:20:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:32:47]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:32:47] 2025-10-13 00:31:58,428 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | job 6839319320 has completed (purged errors)
[2025-10-13 02:32:47] 2025-10-13 00:31:58,429 | INFO     | overall cleanup function is called
[2025-10-13 02:32:47] 2025-10-13 00:31:59,436 | INFO     | --- collectZombieJob: --- 10, [3633030]
[2025-10-13 02:32:47] 2025-10-13 00:31:59,436 | INFO     | zombie collector waiting for pid 3633030
[2025-10-13 02:32:47] 2025-10-13 00:31:59,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:32:47] 2025-10-13 00:31:59,436 | INFO     | collected zombie processes
[2025-10-13 02:32:47] 2025-10-13 00:31:59,437 | INFO     | will attempt to kill all subprocesses of pid=3633030
[2025-10-13 02:32:47] 2025-10-13 00:31:59,487 | INFO     | process IDs to be killed: [3633030] (in reverse order)
[2025-10-13 02:32:47] 2025-10-13 00:31:59,521 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:32:47] 2025-10-13 00:31:59,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:32:47] 2025-10-13 00:31:59,523 | INFO     | did not find any defunct processes belonging to 3633030
[2025-10-13 02:32:47] 2025-10-13 00:31:59,524 | INFO     | did not find any defunct processes belonging to 3633030
[2025-10-13 02:32:47] 2025-10-13 00:31:59,525 | INFO     | ready for new job
[2025-10-13 02:32:47] 2025-10-13 00:31:59,525 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:32:47] 2025-10-13 00:31:59,525 | INFO     | ***************************************
[2025-10-13 02:32:47] 2025-10-13 00:31:59,525 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:32:47] 2025-10-13 00:31:59,525 | INFO     | ***************************************
[2025-10-13 02:32:47] 2025-10-13 00:31:59,525 | INFO     | 
[2025-10-13 02:32:47] 2025-10-13 00:31:59,526 | INFO     | architecture information:
[2025-10-13 02:32:47] 2025-10-13 00:31:59,526 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:32:47] 2025-10-13 00:31:59,540 | INFO     | cat /etc/os-release:
[2025-10-13 02:32:47] NAME="CentOS Linux"
[2025-10-13 02:32:47] VERSION="7 (Core)"
[2025-10-13 02:32:47] ID="centos"
[2025-10-13 02:32:47] ID_LIKE="rhel fedora"
[2025-10-13 02:32:47] VERSION_ID="7"
[2025-10-13 02:32:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:32:47] ANSI_COLOR="0;31"
[2025-10-13 02:32:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:32:47] HOME_URL="https://www.centos.org/"
[2025-10-13 02:32:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:32:47] 
[2025-10-13 02:32:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:32:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:32:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:32:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:32:47] 
[2025-10-13 02:32:47] 2025-10-13 00:31:59,540 | INFO     | ***************************************
[2025-10-13 02:32:47] 2025-10-13 00:32:00,044 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | INFO     | sufficient remaining disk space (333236404224 B)
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | INFO     | update_server=False
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:32:47] 2025-10-13 00:32:00,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:32:47] 2025-10-13 00:32:00,063 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:32:47] 2025-10-13 00:32:00,219 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 02:32:47] 2025-10-13 00:32:00,219 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 02:32:47] 2025-10-13 00:32:00,219 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:32:47] 2025-10-13 00:32:00,219 | INFO     | will abort loop
[2025-10-13 02:32:47] 2025-10-13 00:32:00,754 | INFO     | all data control threads have been joined
[2025-10-13 02:32:47] 2025-10-13 00:32:01,068 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:01,068 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:01,079 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:01,097 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:32:47] 2025-10-13 00:32:01,184 | INFO     | all payload control threads have been joined
[2025-10-13 02:32:47] 2025-10-13 00:32:01,225 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:01,614 | INFO     | all job control threads have been joined
[2025-10-13 02:32:47] 2025-10-13 00:32:01,635 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:01,760 | INFO     | [data] control thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:01,967 | INFO     | [job] validate thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:01,972 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:02,068 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:02,154 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:02,164 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:02,190 | INFO     | [payload] control thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:02,396 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:02,619 | INFO     | [job] control thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:05,105 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:10,330 | INFO     | job.realtimelogging is not enabled
[2025-10-13 02:32:47] 2025-10-13 00:32:11,336 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:32:47] 2025-10-13 00:32:39,770 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:32:47] 2025-10-13 00:32:41,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520613586752)>', '<ExcThread(monitor, started 140519938168576)>']
[2025-10-13 02:32:47] 2025-10-13 00:32:42,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:32:47] 2025-10-13 00:32:42,288 | INFO     | [monitor] control thread has ended
[2025-10-13 02:32:47] 2025-10-13 00:32:46,892 | INFO     | all workflow threads have been joined
[2025-10-13 02:32:47] 2025-10-13 00:32:46,892 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:32:47] 2025-10-13 00:32:46,893 | INFO     | traces error code: 0
[2025-10-13 02:32:47] 2025-10-13 00:32:46,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:32:47] 2025-10-13 00:32:46,964 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:32:47] 2025-10-13 00:32:46,968 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:32:47] 2025-10-13 00:32:46,971 [wrapper] pilotpid: 3626454
[2025-10-13 02:32:47] 2025-10-13 00:32:46,975 [wrapper] Pilot exit status: 0
[2025-10-13 02:32:47] 2025-10-13 00:32:46,985 [wrapper] pandaids: 6839319320
[2025-10-13 02:32:47] 2025-10-13 00:32:47,009 [wrapper] cleanup supervisor_pilot 3642896 3626455
[2025-10-13 02:32:47] 2025-10-13 00:32:47,013 [wrapper] Test setup, not cleaning
[2025-10-13 02:32:47] 2025-10-13 00:32:47,016 [wrapper] apfmon messages muted
[2025-10-13 02:32:47] 2025-10-13 00:32:47,020 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:32:47] 2025-10-13 00:32:47,023 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:32:47]  *** Error codes and diagnostics ***
[2025-10-13 02:32:47]     "exeErrorCode": 0,
[2025-10-13 02:32:47]     "exeErrorDiag": "",
[2025-10-13 02:32:47]     "pilotErrorCode": 0,
[2025-10-13 02:32:47]     "pilotErrorDiag": "",
[2025-10-13 02:32:47]  *** Listing of results directory ***
[2025-10-13 02:32:47] total 417404
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc    557409 Oct 12 04:56 pilot3.tar.gz
[2025-10-13 02:32:47] -rwx------ 1 boinc boinc     36292 Oct 12 05:14 runpilot2-wrapper.sh
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc      5112 Oct 12 05:14 queuedata.json
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc       100 Oct 13 01:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:32:47] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 01:20 run_atlas
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc       105 Oct 13 01:20 job.xml
[2025-10-13 02:32:47] -rw-r--r-- 2 boinc boinc 224721727 Oct 13 01:20 EVNT.46676267._003215.pool.root.1
[2025-10-13 02:32:47] -rw-r--r-- 2 boinc boinc    569675 Oct 13 01:20 input.tar.gz
[2025-10-13 02:32:47] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:20 start_atlas.sh
[2025-10-13 02:32:47] drwxrwx--x 2 boinc boinc      4096 Oct 13 01:20 shared
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:20 boinc_setup_complete
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc      6370 Oct 13 01:20 init_data.xml
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:20 boinc_lockfile
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc      2549 Oct 13 01:20 pandaJob.out
[2025-10-13 02:32:47] -rw------- 1 boinc boinc    975603 Oct 13 01:20 agis_schedconf.cvmfs.json
[2025-10-13 02:32:47] -rw------- 1 boinc boinc   1560580 Oct 13 01:20 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:32:47] drwx------ 5 boinc boinc      4096 Oct 13 01:20 pilot3
[2025-10-13 02:32:47] -rw------- 1 boinc boinc 197003995 Oct 13 02:31 HITS.46676269._070022.pool.root.1
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc       529 Oct 13 02:31 boinc_task_state.xml
[2025-10-13 02:32:47] -rw------- 1 boinc boinc      1022 Oct 13 02:31 memory_monitor_summary.json
[2025-10-13 02:32:47] -rw------- 1 boinc boinc    264353 Oct 13 02:31 log.46676269._070022.job.log.tgz.1
[2025-10-13 02:32:47] -rw------- 1 boinc boinc      7763 Oct 13 02:31 heartbeat.json
[2025-10-13 02:32:47] -rw------- 1 boinc boinc        95 Oct 13 02:31 pilot_heartbeat.json
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc      8192 Oct 13 02:32 boinc_mmap_file
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc        27 Oct 13 02:32 wrapper_checkpoint.txt
[2025-10-13 02:32:47] -rw------- 1 boinc boinc      4814 Oct 13 02:32 pilotlog.txt
[2025-10-13 02:32:47] -rw------- 1 boinc boinc    636862 Oct 13 02:32 log.46676269._070022.job.log.1
[2025-10-13 02:32:47] -rw------- 1 boinc boinc       357 Oct 13 02:32 output.list
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc       620 Oct 13 02:32 runtime_log
[2025-10-13 02:32:47] -rw------- 1 boinc boinc    921600 Oct 13 02:32 result.tar.gz
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc      8777 Oct 13 02:32 runtime_log.err
[2025-10-13 02:32:47] -rw------- 1 boinc boinc       658 Oct 13 02:32 lHWKDmGi1R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYSiNDmqhTZgm.diag
[2025-10-13 02:32:47] -rw-r--r-- 1 boinc boinc     13076 Oct 13 02:32 stderr.txt
[2025-10-13 02:32:47] HITS file was successfully produced:
[2025-10-13 02:32:47] -rw------- 1 boinc boinc 197003995 Oct 13 02:31 shared/HITS.pool.root.1
[2025-10-13 02:32:47]  *** Contents of shared directory: ***
[2025-10-13 02:32:47] total 413324
[2025-10-13 02:32:47] -rw-r--r-- 2 boinc boinc 224721727 Oct 13 01:20 ATLAS.root_0
[2025-10-13 02:32:47] -rw-r--r-- 2 boinc boinc    569675 Oct 13 01:20 input.tar.gz
[2025-10-13 02:32:47] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:20 start_atlas.sh
[2025-10-13 02:32:47] -rw------- 1 boinc boinc 197003995 Oct 13 02:31 HITS.pool.root.1
[2025-10-13 02:32:47] -rw------- 1 boinc boinc    921600 Oct 13 02:32 result.tar.gz
02:32:49 (3622667): run_atlas exited; CPU time 16123.478426
02:32:49 (3622667): called boinc_finish(0)

</stderr_txt>
]]>

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