Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:24:21 (3518298): wrapper (7.7.26015): starting
01:24:21 (3518298): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 01:24:21] Arguments: --nthreads 4
[2025-10-13 01:24:21] Threads: 4
[2025-10-13 01:24:21] Checking for CVMFS
[2025-10-13 01:24:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:24:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:24:21] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:24:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:24:21] 2.9.2.0 1857307 4799 96868 151641 0 56 29775295 36864000 0 130560 0 4321872 99.992 168139 952 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 01:24:21] CVMFS is ok
[2025-10-13 01:24:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:24:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:24:21] Further information can be found at the LHC@home message board.
[2025-10-13 01:24:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:24:21] Checking for apptainer binary...
[2025-10-13 01:24:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:24:21] Running /usr/bin/apptainer --version
[2025-10-13 01:24:21] apptainer version 1.4.1-1.1
[2025-10-13 01:24:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:24:21] thA319a
[2025-10-13 01:24:21] apptainer works
[2025-10-13 01:24:21] Set ATHENA_PROC_NUMBER=4
[2025-10-13 01:24:21] Set ATHENA_CORE_NUMBER=4
[2025-10-13 01:24:21] Starting ATLAS job with PandaID=6839387561
[2025-10-13 01:24:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:34:49]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:34:49] 2025-10-13 00:34:29,986 | INFO     | collected zombie processes
[2025-10-13 02:34:49] 2025-10-13 00:34:29,986 | INFO     | will attempt to kill all subprocesses of pid=3528643
[2025-10-13 02:34:49] 2025-10-13 00:34:30,030 | INFO     | process IDs to be killed: [3528643] (in reverse order)
[2025-10-13 02:34:49] 2025-10-13 00:34:30,064 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:34:49] 2025-10-13 00:34:30,064 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:34:49] 2025-10-13 00:34:30,066 | INFO     | did not find any defunct processes belonging to 3528643
[2025-10-13 02:34:49] 2025-10-13 00:34:30,067 | INFO     | did not find any defunct processes belonging to 3528643
[2025-10-13 02:34:49] 2025-10-13 00:34:30,067 | INFO     | ready for new job
[2025-10-13 02:34:49] 2025-10-13 00:34:30,068 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:34:49] 2025-10-13 00:34:30,068 | INFO     | ***************************************
[2025-10-13 02:34:49] 2025-10-13 00:34:30,068 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:34:49] 2025-10-13 00:34:30,068 | INFO     | ***************************************
[2025-10-13 02:34:49] 2025-10-13 00:34:30,068 | INFO     | 
[2025-10-13 02:34:49] 2025-10-13 00:34:30,069 | INFO     | architecture information:
[2025-10-13 02:34:49] 2025-10-13 00:34:30,069 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:34:49] 2025-10-13 00:34:30,083 | INFO     | cat /etc/os-release:
[2025-10-13 02:34:49] NAME="CentOS Linux"
[2025-10-13 02:34:49] VERSION="7 (Core)"
[2025-10-13 02:34:49] ID="centos"
[2025-10-13 02:34:49] ID_LIKE="rhel fedora"
[2025-10-13 02:34:49] VERSION_ID="7"
[2025-10-13 02:34:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:34:49] ANSI_COLOR="0;31"
[2025-10-13 02:34:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:34:49] HOME_URL="https://www.centos.org/"
[2025-10-13 02:34:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:34:49] 
[2025-10-13 02:34:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:34:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:34:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:34:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:34:49] 
[2025-10-13 02:34:49] 2025-10-13 00:34:30,084 | INFO     | ***************************************
[2025-10-13 02:34:49] 2025-10-13 00:34:30,587 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 02:34:49] 2025-10-13 00:34:30,604 | INFO     | sufficient remaining disk space (329830629376 B)
[2025-10-13 02:34:49] 2025-10-13 00:34:30,604 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:34:49] 2025-10-13 00:34:30,604 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:34:49] 2025-10-13 00:34:30,604 | INFO     | update_server=False
[2025-10-13 02:34:49] 2025-10-13 00:34:30,605 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:34:49] 2025-10-13 00:34:30,605 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:34:49] 2025-10-13 00:34:30,605 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 02:34:49] 2025-10-13 00:34:30,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:34:49] 2025-10-13 00:34:30,605 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:34:49] 2025-10-13 00:34:30,605 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:34:49] 2025-10-13 00:34:30,605 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:34:49] 2025-10-13 00:34:30,606 | INFO     | aborting loop
[2025-10-13 02:34:49] 2025-10-13 00:34:30,606 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:34:49] 2025-10-13 00:34:31,598 | INFO     | all data control threads have been joined
[2025-10-13 02:34:49] 2025-10-13 00:34:31,608 | INFO     | all job control threads have been joined
[2025-10-13 02:34:49] 2025-10-13 00:34:31,608 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:31,609 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:31,610 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:31,812 | INFO     | all payload control threads have been joined
[2025-10-13 02:34:49] 2025-10-13 00:34:31,866 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:31,880 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:34:49] 2025-10-13 00:34:32,150 | INFO     | [job] validate thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:32,327 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:32,439 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:32,453 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:32,604 | INFO     | [data] control thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:32,614 | INFO     | [job] control thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:32,818 | INFO     | [payload] control thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:32,882 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:33,193 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:33,886 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:34,393 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:34:49] 2025-10-13 00:34:34,611 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:41,223 | INFO     | job.realtimelogging is not enabled
[2025-10-13 02:34:49] 2025-10-13 00:34:42,229 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:34:49] 2025-10-13 00:34:44,243 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140384785606464)>', '<ExcThread(monitor, started 140383480702720)>']
[2025-10-13 02:34:49] 2025-10-13 00:34:44,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:34:49] 2025-10-13 00:34:44,678 | INFO     | [monitor] control thread has ended
[2025-10-13 02:34:49] 2025-10-13 00:34:49,269 | INFO     | all workflow threads have been joined
[2025-10-13 02:34:49] 2025-10-13 00:34:49,269 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:34:49] 2025-10-13 00:34:49,269 | INFO     | traces error code: 0
[2025-10-13 02:34:49] 2025-10-13 00:34:49,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:34:49] 2025-10-13 00:34:49,350 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:34:49] 2025-10-13 00:34:49,354 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:34:49] 2025-10-13 00:34:49,358 [wrapper] pilotpid: 3522083
[2025-10-13 02:34:49] 2025-10-13 00:34:49,362 [wrapper] Pilot exit status: 0
[2025-10-13 02:34:49] 2025-10-13 00:34:49,374 [wrapper] pandaids: 6839387561
[2025-10-13 02:34:49] 2025-10-13 00:34:49,397 [wrapper] cleanup supervisor_pilot 3538382 3522084
[2025-10-13 02:34:49] 2025-10-13 00:34:49,401 [wrapper] Test setup, not cleaning
[2025-10-13 02:34:49] 2025-10-13 00:34:49,404 [wrapper] apfmon messages muted
[2025-10-13 02:34:49] 2025-10-13 00:34:49,409 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:34:49] 2025-10-13 00:34:49,412 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:34:49]  *** Error codes and diagnostics ***
[2025-10-13 02:34:49]     "exeErrorCode": 0,
[2025-10-13 02:34:49]     "exeErrorDiag": "",
[2025-10-13 02:34:49]     "pilotErrorCode": 0,
[2025-10-13 02:34:49]     "pilotErrorDiag": "",
[2025-10-13 02:34:49]  *** Listing of results directory ***
[2025-10-13 02:34:49] total 412152
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc    557409 Oct 12 06:38 pilot3.tar.gz
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc      5112 Oct 12 06:48 queuedata.json
[2025-10-13 02:34:49] -rwx------ 1 boinc boinc     36292 Oct 12 06:49 runpilot2-wrapper.sh
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc       100 Oct 13 01:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:34:49] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 01:24 run_atlas
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc       105 Oct 13 01:24 job.xml
[2025-10-13 02:34:49] -rw-r--r-- 2 boinc boinc 219122999 Oct 13 01:24 EVNT.46676267._004306.pool.root.1
[2025-10-13 02:34:49] -rw-r--r-- 2 boinc boinc    569678 Oct 13 01:24 input.tar.gz
[2025-10-13 02:34:49] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:24 start_atlas.sh
[2025-10-13 02:34:49] drwxrwx--x 2 boinc boinc      4096 Oct 13 01:24 shared
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:24 boinc_setup_complete
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc      6367 Oct 13 01:24 init_data.xml
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:24 boinc_lockfile
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc      2546 Oct 13 01:24 pandaJob.out
[2025-10-13 02:34:49] -rw------- 1 boinc boinc    975603 Oct 13 01:24 agis_schedconf.cvmfs.json
[2025-10-13 02:34:49] -rw------- 1 boinc boinc   1560580 Oct 13 01:24 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:34:49] drwx------ 5 boinc boinc      4096 Oct 13 01:24 pilot3
[2025-10-13 02:34:49] -rw------- 1 boinc boinc        95 Oct 13 02:33 pilot_heartbeat.json
[2025-10-13 02:34:49] -rw------- 1 boinc boinc 197304035 Oct 13 02:34 HITS.46676269._071452.pool.root.1
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc       529 Oct 13 02:34 boinc_task_state.xml
[2025-10-13 02:34:49] -rw------- 1 boinc boinc      1022 Oct 13 02:34 memory_monitor_summary.json
[2025-10-13 02:34:49] -rw------- 1 boinc boinc    244178 Oct 13 02:34 log.46676269._071452.job.log.tgz.1
[2025-10-13 02:34:49] -rw------- 1 boinc boinc      7775 Oct 13 02:34 heartbeat.json
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc      8192 Oct 13 02:34 boinc_mmap_file
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc        27 Oct 13 02:34 wrapper_checkpoint.txt
[2025-10-13 02:34:49] -rw------- 1 boinc boinc      4628 Oct 13 02:34 pilotlog.txt
[2025-10-13 02:34:49] -rw------- 1 boinc boinc    622586 Oct 13 02:34 log.46676269._071452.job.log.1
[2025-10-13 02:34:49] -rw------- 1 boinc boinc       357 Oct 13 02:34 output.list
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc       620 Oct 13 02:34 runtime_log
[2025-10-13 02:34:49] -rw------- 1 boinc boinc    880640 Oct 13 02:34 result.tar.gz
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc      8782 Oct 13 02:34 runtime_log.err
[2025-10-13 02:34:49] -rw------- 1 boinc boinc       659 Oct 13 02:34 6IELDmyC3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmCfiNDm8jb2Un.diag
[2025-10-13 02:34:49] -rw-r--r-- 1 boinc boinc     10298 Oct 13 02:34 stderr.txt
[2025-10-13 02:34:49] HITS file was successfully produced:
[2025-10-13 02:34:49] -rw------- 1 boinc boinc 197304035 Oct 13 02:34 shared/HITS.pool.root.1
[2025-10-13 02:34:49]  *** Contents of shared directory: ***
[2025-10-13 02:34:49] total 408112
[2025-10-13 02:34:49] -rw-r--r-- 2 boinc boinc 219122999 Oct 13 01:24 ATLAS.root_0
[2025-10-13 02:34:49] -rw-r--r-- 2 boinc boinc    569678 Oct 13 01:24 input.tar.gz
[2025-10-13 02:34:49] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:24 start_atlas.sh
[2025-10-13 02:34:49] -rw------- 1 boinc boinc 197304035 Oct 13 02:34 HITS.pool.root.1
[2025-10-13 02:34:49] -rw------- 1 boinc boinc    880640 Oct 13 02:34 result.tar.gz
02:34:50 (3518298): run_atlas exited; CPU time 15777.957212
02:34:50 (3518298): called boinc_finish(0)

</stderr_txt>
]]>

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