Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-16 01:30:29 (454548): vboxwrapper version 26210
2025-10-16 01:30:29 (454548): BOINC client version: 8.2.5
2025-10-16 01:30:30 (454548): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-10-16 01:30:31 (454548): Successfully copied 'init_data.xml' to the shared directory.
2025-10-16 01:30:31 (454548): Create VM. (boinc_7db7a6e30485f54b, slot#2)
2025-10-16 01:30:31 (454548): Setting Memory Size for VM. (4400MB)
2025-10-16 01:30:32 (454548): Setting CPU Count for VM. (4)
2025-10-16 01:30:32 (454548): Setting Chipset Options for VM.
2025-10-16 01:30:32 (454548): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-16 01:30:33 (454548): Setting Boot Options for VM.
2025-10-16 01:30:33 (454548): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-16 01:30:33 (454548): Enabling VM Network Access.
2025-10-16 01:30:34 (454548): Disabling USB Support for VM.
2025-10-16 01:30:34 (454548): Disabling COM Port Support for VM.
2025-10-16 01:30:34 (454548): Disabling LPT Port Support for VM.
2025-10-16 01:30:34 (454548): Disabling Audio Support for VM.
2025-10-16 01:30:35 (454548): Disabling Clipboard Support for VM.
2025-10-16 01:30:35 (454548): Disabling Drag and Drop Support for VM.
2025-10-16 01:30:35 (454548): Adding storage controller(s) to VM.
2025-10-16 01:30:35 (454548): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-16 01:30:38 (454548): Adding VirtualBox Guest Additions to VM.
2025-10-16 01:30:38 (454548): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-16 01:30:38 (454548): forwarding host port 56006 to guest port 80
2025-10-16 01:30:38 (454548): Enabling remote desktop for VM.
2025-10-16 01:30:39 (454548): Enabling shared directory for VM.
2025-10-16 01:30:40 (454548): Starting VM using VBoxManage interface. (boinc_7db7a6e30485f54b, slot#2)
2025-10-16 01:30:46 (454548): Successfully started VM. (PID = '454268')
2025-10-16 01:30:46 (454548): Reporting VM Process ID to BOINC.
2025-10-16 01:30:46 (454548): Guest Log: BIOS: VirtualBox 7.1.12
2025-10-16 01:30:46 (454548): Guest Log: CPUID EDX: 0x178bfbff
2025-10-16 01:30:46 (454548): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-16 01:30:46 (454548): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-16 01:30:46 (454548): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-16 01:30:46 (454548): Detected: Web Application Enabled (http://localhost:56006)
2025-10-16 01:30:46 (454548): Detected: Remote Desktop Enabled (localhost:56007)
2025-10-16 01:30:46 (454548): Preference change detected
2025-10-16 01:30:46 (454548): Setting CPU throttle for VM. (98%)
2025-10-16 01:30:46 (454548): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-16 01:30:48 (454548): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-16 01:30:48 (454548): Guest Log: BIOS: Booting from Hard Disk...
2025-10-16 01:30:51 (454548): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-16 01:30:51 (454548): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-16 01:30:51 (454548): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-16 01:30:56 (454548): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-16 01:30:56 (454548): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-16 01:31:01 (454548): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-16 01:31:01 (454548): Guest Log: 00:00:00.000221 main     Log opened 2025-10-16T01:30:59.601722000Z
2025-10-16 01:31:01 (454548): Guest Log: 00:00:00.000314 main     OS Product: Linux
2025-10-16 01:31:01 (454548): Guest Log: 00:00:00.000336 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-16 01:31:01 (454548): Guest Log: 00:00:00.000353 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-16 01:31:01 (454548): Guest Log: 00:00:00.000371 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-16 01:31:01 (454548): Guest Log: 00:00:00.000371 main     Process ID: 1315
2025-10-16 01:31:01 (454548): Guest Log: 00:00:00.000371 main     Package type: LINUX_64BITS_GENERIC
2025-10-16 01:31:01 (454548): Guest Log: 00:00:00.001175 main     5.2.32 r132073 started. Verbose level = 0
2025-10-16 01:31:01 (454548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-16 01:31:01 (454548): Guest Log: [INFO] Mounting shared directory
2025-10-16 01:31:01 (454548): Guest Log: [INFO] Checking for init_data.xml
2025-10-16 01:31:11 (454548): Guest Log: 00:00:10.008108 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 222 221 000ns (GuestNow=1 760 571 070 381 663 000 ns GuestLast=1 760 578 259 603 884 000 ns fSetTimeLastLoop=true )
2025-10-16 01:31:12 (454548): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-16 01:31:12 (454548): Guest Log: [INFO] Detected branch: prod
2025-10-16 01:31:12 (454548): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-16 01:31:12 (454548): Guest Log: Copying input files
2025-10-16 01:31:13 (454548): Guest Log: Copied input files into RunAtlas.
2025-10-16 01:31:13 (454548): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-16 01:31:13 (454548): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-16 01:31:13 (454548): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-16 01:31:13 (454548): Guest Log: Further information can be found at the LHC@home message board.
2025-10-16 01:32:09 (454548): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-16 01:32:09 (454548): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-16 01:32:09 (454548): Guest Log: 2.6.3.0 1608 1 30184 151752 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-16 01:32:09 (454548): Guest Log: copied the webapp to /var/www
2025-10-16 01:32:09 (454548): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-16 01:32:09 (454548): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-16 01:32:10 (454548): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-16 01:32:10 (454548): Guest Log:  *** Starting ATLAS job. (PandaID=6838772231 taskID=46676269) ***
2025-10-16 03:11:17 (454548): Status Report: Elapsed Time: '6000.000000'
2025-10-16 03:11:17 (454548): Status Report: CPU Time: '21981.843750'
2025-10-16 03:39:41 (454548): Guest Log:  *** Job finished ***
2025-10-16 03:39:41 (454548): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:34,430 | INFO     | PID=5997 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:34,430 | INFO     | found 0 job(s) in 20 queues
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:34,430 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:34,430 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:34,431 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:34,431 | INFO     | [monitor] control thread has ended
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:36,630 | INFO     | all workflow threads have been joined
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:36,630 | INFO     | end of generic workflow (traces error code: 0)
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:36,630 | INFO     | traces error code: 0
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:36,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:36,725 [wrapper] ==== pilot stdout END ====
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:36,730 [wrapper] ==== wrapper stdout RESUME ====
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:36,735 [wrapper] pilotpid: 5997
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:36,741 [wrapper] Pilot exit status: 0
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:37,234 [wrapper] pandaids: 6838772231
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:37,261 [wrapper] cleanup supervisor_pilot  3561 5998
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:37,266 [wrapper] Test setup, not cleaning
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:37,271 [wrapper] apfmon messages muted
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:37,275 [wrapper] ==== wrapper stdout END ====
2025-10-16 03:39:41 (454548): Guest Log: 2025-10-16 01:39:37,280 [wrapper] ==== wrapper stderr END ====
2025-10-16 03:39:41 (454548): Guest Log:  *** Error codes and diagnostics ***
2025-10-16 03:39:41 (454548): Guest Log:     "exeErrorCode": 0,
2025-10-16 03:39:41 (454548): Guest Log:     "exeErrorDiag": "",
2025-10-16 03:39:41 (454548): Guest Log:     "pilotErrorCode": 0,
2025-10-16 03:39:41 (454548): Guest Log:     "pilotErrorDiag": "",
2025-10-16 03:39:41 (454548): Guest Log:  *** Listing of results directory ***
2025-10-16 03:39:41 (454548): Guest Log: total 194092
2025-10-16 03:39:41 (454548): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 17:51 pilot3.tar.gz
2025-10-16 03:39:41 (454548): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 18:09 queuedata.json
2025-10-16 03:39:41 (454548): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 18:09 runpilot2-wrapper.sh
2025-10-16 03:39:41 (454548): Guest Log: -rwxr-xr-x. 1 atlas atlas      9503 Oct 15 23:31 init_data.xml
2025-10-16 03:39:41 (454548): Guest Log: -rwxr-xr-x. 1 atlas atlas    569681 Oct 15 23:31 input.tar.gz
2025-10-16 03:39:41 (454548): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 15 23:31 start_atlas.sh
2025-10-16 03:39:41 (454548): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 15 23:31 EVNT.46676267._002500.pool.root.1 -> /data/./ATLAS.root_0
2025-10-16 03:39:41 (454548): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 15 23:32 pandaJob.out
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas    974310 Oct 15 23:33 agis_schedconf.cvmfs.json
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas   1560740 Oct 15 23:33 agis_ddmendpoints.agis.ALL.json
2025-10-16 03:39:41 (454548): Guest Log: drwx------. 5 atlas atlas      4096 Oct 15 23:33 pilot3
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas 192227857 Oct 16 01:38 HITS.46676269._062292.pool.root.1
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas      1025 Oct 16 01:38 memory_monitor_summary.json
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas    307645 Oct 16 01:38 log.46676269._062292.job.log.tgz.1
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas      7754 Oct 16 01:39 heartbeat.json
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas        95 Oct 16 01:39 pilot_heartbeat.json
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 16 01:39 pilotlog.txt
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas   1039707 Oct 16 01:39 log.46676269._062292.job.log.1
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas       357 Oct 16 01:39 output.list
2025-10-16 03:39:41 (454548): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 16 01:39 runtime_log
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas   1361920 Oct 16 01:39 result.tar.gz
2025-10-16 03:39:41 (454548): Guest Log: -rw-r--r--. 1 atlas atlas      8644 Oct 16 01:39 runtime_log.err
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas       658 Oct 16 01:39 iTyNDmDDtR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlAhNDmTPsLom.diag
2025-10-16 03:39:41 (454548): Guest Log: Looking for outputfile HITS.46676269._062292.pool.root.1
2025-10-16 03:39:41 (454548): Guest Log: HITS file was successfully produced
2025-10-16 03:39:41 (454548): Guest Log: -rw-------. 1 atlas atlas 192227857 Oct 16 01:38 /home/atlas/RunAtlas/HITS.46676269._062292.pool.root.1
2025-10-16 03:39:42 (454548): Guest Log: Successfully finished the ATLAS job!
2025-10-16 03:39:42 (454548): Guest Log: Copying the results back to the shared directory!
2025-10-16 03:39:42 (454548): Guest Log:  *** Contents of shared directory: ***
2025-10-16 03:39:42 (454548): Guest Log: total 406496
2025-10-16 03:39:42 (454548): Guest Log: -rwxrwxrwx. 1 root root 222054211 Oct 15 23:30 ATLAS.root_0
2025-10-16 03:39:42 (454548): Guest Log: -rwxrwxrwx. 1 root root 192227857 Oct 16  2025 HITS.pool.root.1
2025-10-16 03:39:42 (454548): Guest Log: -rwxrwxrwx. 1 root root      9503 Oct 15 23:30 init_data.xml
2025-10-16 03:39:42 (454548): Guest Log: -rwxrwxrwx. 1 root root    569681 Oct 12 13:31 input.tar.gz
2025-10-16 03:39:42 (454548): Guest Log: -rwxrwxrwx. 1 root root   1361920 Oct 16  2025 result.tar.gz
2025-10-16 03:39:42 (454548): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 12 13:31 start_atlas.sh
2025-10-16 03:39:42 (454548): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-16 03:39:42 (454548): VM Completion File Detected.
2025-10-16 03:39:42 (454548): Powering off VM.
2025-10-16 03:39:44 (454548): Successfully stopped VM.
2025-10-16 03:39:44 (454548): Deregistering VM. (boinc_7db7a6e30485f54b, slot#2)
2025-10-16 03:39:44 (454548): Removing network bandwidth throttle group from VM.
2025-10-16 03:39:44 (454548): Removing VM from VirtualBox.
2025-10-16 03:39:49 (454548): called boinc_finish(0)

</stderr_txt>
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