Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
09:23:59 (441): wrapper (7.7.26015): starting
09:23:59 (441): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 09:23:59] Arguments: --nthreads 8
[2025-10-12 09:23:59] Threads: 8
[2025-10-12 09:23:59] Checking for CVMFS
[2025-10-12 09:23:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:23:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:23:59] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:23:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:23:59] 2.11.2.0 2876 973 65236 151621 0 56 13524337 20275200 1 130560 0 675539 99.989 34623 38299 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 09:23:59] CVMFS is ok
[2025-10-12 09:23:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:23:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:23:59] Further information can be found at the LHC@home message board.
[2025-10-12 09:23:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:23:59] Checking for apptainer binary...
[2025-10-12 09:23:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:23:59] Running /usr/bin/apptainer --version
[2025-10-12 09:23:59] apptainer version 1.3.2-1.el7
[2025-10-12 09:23:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:24:01] c-204-40.aglt2.org
[2025-10-12 09:24:01] apptainer works
[2025-10-12 09:24:01] Set ATHENA_PROC_NUMBER=8
[2025-10-12 09:24:01] Set ATHENA_CORE_NUMBER=8
[2025-10-12 09:24:01] Starting ATLAS job with PandaID=6839821844
[2025-10-12 09:24:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 11:31:37]  *** The last 200 lines of the pilot log: ***
[2025-10-12 11:31:37] 2025-10-12 15:30:32,560 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 11:31:37] 2025-10-12 15:30:32,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 11:31:37] 2025-10-12 15:30:32,561 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 11:31:37] 2025-10-12 15:30:32,561 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 11:31:37] 2025-10-12 15:30:32,564 | INFO     | fitting pss+swap vs Time
[2025-10-12 11:31:37] 2025-10-12 15:30:32,565 | INFO     | sum of square deviations: 591173875.0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,565 | INFO     | sum of deviations: -7345027018.999998
[2025-10-12 11:31:37] 2025-10-12 15:30:32,566 | INFO     | mean x: 1760279241.5
[2025-10-12 11:31:37] 2025-10-12 15:30:32,566 | INFO     | mean y: 2536409.9838709678
[2025-10-12 11:31:37] 2025-10-12 15:30:32,566 | INFO     | -- intersect: 21873087759.707035
[2025-10-12 11:31:37] 2025-10-12 15:30:32,566 | INFO     | intersect: 21873087759.707035
[2025-10-12 11:31:37] 2025-10-12 15:30:32,566 | INFO     | chi2: 2.510034358530927
[2025-10-12 11:31:37] 2025-10-12 15:30:32,566 | INFO     | sum of square deviations: 522502820.0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,567 | INFO     | sum of deviations: 1476366652.0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,567 | INFO     | mean x: 1760279089.0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,567 | INFO     | mean y: 2555389.218487395
[2025-10-12 11:31:37] 2025-10-12 15:30:32,567 | INFO     | -- intersect: -4971230867.499783
[2025-10-12 11:31:37] 2025-10-12 15:30:32,568 | INFO     | intersect: -4971230867.499783
[2025-10-12 11:31:37] 2025-10-12 15:30:32,568 | INFO     | chi2: 1.7206665452330299
[2025-10-12 11:31:37] 2025-10-12 15:30:32,568 | INFO     | current chi2=1.7206665452330299 (change=31.448486376891598 %)
[2025-10-12 11:31:37] 2025-10-12 15:30:32,568 | INFO     | sum of square deviations: 459366752.5
[2025-10-12 11:31:37] 2025-10-12 15:30:32,569 | INFO     | sum of deviations: 1835063335.5000024
[2025-10-12 11:31:37] 2025-10-12 15:30:32,569 | INFO     | mean x: 1760278936.5
[2025-10-12 11:31:37] 2025-10-12 15:30:32,569 | INFO     | mean y: 2556258.9736842103
[2025-10-12 11:31:37] 2025-10-12 15:30:32,569 | INFO     | -- intersect: -7029348682.000656
[2025-10-12 11:31:37] 2025-10-12 15:30:32,569 | INFO     | intersect: -7029348682.000656
[2025-10-12 11:31:37] 2025-10-12 15:30:32,570 | INFO     | chi2: 1.723039741847394
[2025-10-12 11:31:37] 2025-10-12 15:30:32,570 | INFO     | current chi2=1.723039741847394 (change=-0.13792309851893353 %)
[2025-10-12 11:31:37] 2025-10-12 15:30:32,570 | INFO     | right removable region: 113
[2025-10-12 11:31:37] 2025-10-12 15:30:32,570 | INFO     | sum of square deviations: 522502820.0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,571 | INFO     | sum of deviations: -27006521155.0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,571 | INFO     | mean x: 1760279394.0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,571 | INFO     | mean y: 2579313.68907563
[2025-10-12 11:31:37] 2025-10-12 15:30:32,571 | INFO     | -- intersect: 90985863753.70718
[2025-10-12 11:31:37] 2025-10-12 15:30:32,571 | INFO     | intersect: 90985863753.70718
[2025-10-12 11:31:37] 2025-10-12 15:30:32,571 | INFO     | chi2: 0.9737313953086562
[2025-10-12 11:31:37] 2025-10-12 15:30:32,572 | INFO     | current chi2=0.9737313953086562 (change=61.20645153723865 %)
[2025-10-12 11:31:37] 2025-10-12 15:30:32,572 | INFO     | sum of square deviations: 459366752.5
[2025-10-12 11:31:37] 2025-10-12 15:30:32,572 | INFO     | sum of deviations: -27662625412.5
[2025-10-12 11:31:37] 2025-10-12 15:30:32,572 | INFO     | mean x: 1760279546.5
[2025-10-12 11:31:37] 2025-10-12 15:30:32,573 | INFO     | mean y: 2580777.3245614036
[2025-10-12 11:31:37] 2025-10-12 15:30:32,573 | INFO     | -- intersect: 106004927379.70491
[2025-10-12 11:31:37] 2025-10-12 15:30:32,573 | INFO     | intersect: 106004927379.70491
[2025-10-12 11:31:37] 2025-10-12 15:30:32,573 | INFO     | chi2: 0.9390630926893087
[2025-10-12 11:31:37] 2025-10-12 15:30:32,573 | INFO     | current chi2=0.9390630926893087 (change=3.560355842111699 %)
[2025-10-12 11:31:37] 2025-10-12 15:30:32,573 | INFO     | left removable region: 20
[2025-10-12 11:31:37] 2025-10-12 15:30:32,574 | INFO     | sum of square deviations: 249388862.0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,574 | INFO     | sum of deviations: -11857779995.999998
[2025-10-12 11:31:37] 2025-10-12 15:30:32,574 | INFO     | mean x: 1760279516.0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,574 | INFO     | mean y: 2588447.505376344
[2025-10-12 11:31:37] 2025-10-12 15:30:32,574 | INFO     | -- intersect: 83699218139.78633
[2025-10-12 11:31:37] 2025-10-12 15:30:32,574 | INFO     | intersect: 83699218139.78633
[2025-10-12 11:31:37] 2025-10-12 15:30:32,575 | INFO     | chi2: 0.09223376874609078
[2025-10-12 11:31:37] 2025-10-12 15:30:32,575 | INFO     | -- intersect: 83699218139.78633
[2025-10-12 11:31:37] 2025-10-12 15:30:32,575 | INFO     | current memory leak: -47.55 B/s (using 93 data points, chi2=0.09)
[2025-10-12 11:31:37] 2025-10-12 15:30:32,575 | INFO     | could have reported an average CPU frequency of 1985 MHz (8 samples)
[2025-10-12 11:31:37] 2025-10-12 15:30:32,576 | INFO     | ..............................
[2025-10-12 11:31:37] 2025-10-12 15:30:32,576 | INFO     | . Timing measurements:
[2025-10-12 11:31:37] 2025-10-12 15:30:32,576 | INFO     | . get job = 0 s
[2025-10-12 11:31:37] 2025-10-12 15:30:32,576 | INFO     | . initial setup = 2 s
[2025-10-12 11:31:37] 2025-10-12 15:30:32,576 | INFO     | . payload setup = 8 s
[2025-10-12 11:31:37] 2025-10-12 15:30:32,576 | INFO     | . stage-in = 0 s
[2025-10-12 11:31:37] 2025-10-12 15:30:32,576 | INFO     | . payload execution = 7533 s
[2025-10-12 11:31:37] 2025-10-12 15:30:32,576 | INFO     | . stage-out = 0 s
[2025-10-12 11:31:37] 2025-10-12 15:30:32,576 | INFO     | . log creation = 0 s
[2025-10-12 11:31:37] 2025-10-12 15:30:32,577 | INFO     | ..............................
[2025-10-12 11:31:37] 2025-10-12 15:30:32,666 | INFO     | 
[2025-10-12 11:31:37] 2025-10-12 15:30:32,666 | INFO     | job summary report
[2025-10-12 11:31:37] 2025-10-12 15:30:32,667 | INFO     | --------------------------------------------------
[2025-10-12 11:31:37] 2025-10-12 15:30:32,667 | INFO     | PanDA job id: 6839821844
[2025-10-12 11:31:37] 2025-10-12 15:30:32,667 | INFO     | task id: 46676269
[2025-10-12 11:31:37] 2025-10-12 15:30:32,667 | INFO     | errors: (none)
[2025-10-12 11:31:37] 2025-10-12 15:30:32,667 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 11:31:37] 2025-10-12 15:30:32,667 | INFO     | pilot state: finished 
[2025-10-12 11:31:37] 2025-10-12 15:30:32,668 | INFO     | transexitcode: 0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,668 | INFO     | exeerrorcode: 0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,668 | INFO     | exeerrordiag: 
[2025-10-12 11:31:37] 2025-10-12 15:30:32,668 | INFO     | exitcode: 0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,668 | INFO     | exitmsg: OK
[2025-10-12 11:31:37] 2025-10-12 15:30:32,668 | INFO     | cpuconsumptiontime: 55330 s
[2025-10-12 11:31:37] 2025-10-12 15:30:32,669 | INFO     | nevents: 400
[2025-10-12 11:31:37] 2025-10-12 15:30:32,669 | INFO     | neventsw: 0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,669 | INFO     | pid: 10797
[2025-10-12 11:31:37] 2025-10-12 15:30:32,669 | INFO     | pgrp: 10797
[2025-10-12 11:31:37] 2025-10-12 15:30:32,669 | INFO     | corecount: 8
[2025-10-12 11:31:37] 2025-10-12 15:30:32,669 | INFO     | event service: False
[2025-10-12 11:31:37] 2025-10-12 15:30:32,669 | INFO     | sizes: {0: 2348743, 1: 2348885, 6: 2349147, 11: 2349175, 7545: 2376721, 7546: 2385719, 7549: 2385903, 7557: 2386097}
[2025-10-12 11:31:37] 2025-10-12 15:30:32,670 | INFO     | --------------------------------------------------
[2025-10-12 11:31:37] 2025-10-12 15:30:32,670 | INFO     | 
[2025-10-12 11:31:37] 2025-10-12 15:30:32,670 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-12 11:31:37] 2025-10-12 15:30:32,699 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,700 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,700 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,700 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,702 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,702 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,702 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,702 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,702 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,703 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,703 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,703 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,703 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,703 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 11:31:37] 2025-10-12 15:30:32,704 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,704 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 11:31:37] 2025-10-12 15:30:32,704 | INFO     | job 6839821844 has completed (purged errors)
[2025-10-12 11:31:37] 2025-10-12 15:30:32,704 | INFO     | overall cleanup function is called
[2025-10-12 11:31:37] 2025-10-12 15:30:33,712 | INFO     | --- collectZombieJob: --- 10, [10797]
[2025-10-12 11:31:37] 2025-10-12 15:30:33,712 | INFO     | zombie collector waiting for pid 10797
[2025-10-12 11:31:37] 2025-10-12 15:30:33,712 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 11:31:37] 2025-10-12 15:30:33,712 | INFO     | collected zombie processes
[2025-10-12 11:31:37] 2025-10-12 15:30:33,713 | INFO     | will attempt to kill all subprocesses of pid=10797
[2025-10-12 11:31:37] 2025-10-12 15:30:33,803 | INFO     | process IDs to be killed: [10797] (in reverse order)
[2025-10-12 11:31:37] 2025-10-12 15:30:33,857 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 11:31:37] 2025-10-12 15:30:33,858 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 11:31:37] 2025-10-12 15:30:33,863 | INFO     | did not find any defunct processes belonging to 10797
[2025-10-12 11:31:37] 2025-10-12 15:30:33,866 | INFO     | did not find any defunct processes belonging to 10797
[2025-10-12 11:31:37] 2025-10-12 15:30:33,866 | INFO     | ready for new job
[2025-10-12 11:31:37] 2025-10-12 15:30:33,866 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 11:31:37] 2025-10-12 15:30:33,868 | INFO     | ***************************************
[2025-10-12 11:31:37] 2025-10-12 15:30:33,868 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 11:31:37] 2025-10-12 15:30:33,868 | INFO     | ***************************************
[2025-10-12 11:31:37] 2025-10-12 15:30:33,869 | INFO     | 
[2025-10-12 11:31:37] 2025-10-12 15:30:33,869 | INFO     | architecture information:
[2025-10-12 11:31:37] 2025-10-12 15:30:33,870 | INFO     | executing command: cat /etc/os-release
[2025-10-12 11:31:37] 2025-10-12 15:30:33,889 | INFO     | cat /etc/os-release:
[2025-10-12 11:31:37] NAME="CentOS Linux"
[2025-10-12 11:31:37] VERSION="7 (Core)"
[2025-10-12 11:31:37] ID="centos"
[2025-10-12 11:31:37] ID_LIKE="rhel fedora"
[2025-10-12 11:31:37] VERSION_ID="7"
[2025-10-12 11:31:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 11:31:37] ANSI_COLOR="0;31"
[2025-10-12 11:31:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 11:31:37] HOME_URL="https://www.centos.org/"
[2025-10-12 11:31:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 11:31:37] 
[2025-10-12 11:31:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 11:31:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 11:31:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 11:31:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 11:31:37] 
[2025-10-12 11:31:37] 2025-10-12 15:30:33,889 | INFO     | ***************************************
[2025-10-12 11:31:37] 2025-10-12 15:30:34,392 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-12 11:31:37] 2025-10-12 15:30:34,412 | INFO     | sufficient remaining disk space (18546163712 B)
[2025-10-12 11:31:37] 2025-10-12 15:30:34,413 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 11:31:37] 2025-10-12 15:30:34,413 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 11:31:37] 2025-10-12 15:30:34,414 | INFO     | update_server=False
[2025-10-12 11:31:37] 2025-10-12 15:30:34,414 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 11:31:37] 2025-10-12 15:30:34,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:31:37] 2025-10-12 15:30:34,415 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 11:31:37] 2025-10-12 15:30:34,415 | INFO     | aborting loop
[2025-10-12 11:31:37] 2025-10-12 15:30:34,682 | INFO     | all payload control threads have been joined
[2025-10-12 11:31:37] 2025-10-12 15:30:35,010 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 11:31:37] 2025-10-12 15:30:35,151 | INFO     | all data control threads have been joined
[2025-10-12 11:31:37] 2025-10-12 15:30:35,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 11:31:37] 2025-10-12 15:30:35,420 | INFO     | [job] retrieve thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:35,420 | INFO     | [job] queue monitor thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:35,421 | INFO     | [job] job monitor thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:35,549 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:35,646 | INFO     | all job control threads have been joined
[2025-10-12 11:31:37] 2025-10-12 15:30:35,688 | INFO     | [payload] control thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:35,914 | INFO     | [job] validate thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:36,157 | INFO     | [data] control thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:36,194 | INFO     | [payload] validate_post thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:36,198 | INFO     | [payload] failed_post thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:36,377 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:36,523 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:36,651 | INFO     | [job] control thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:36,711 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:36,736 | INFO     | [data] copytool_in thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:37,016 | INFO     | [data] copytool_out thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:30:39,407 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 11:31:37] 2025-10-12 15:31:04,336 | INFO     | PID=4389 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-12 11:31:37] 2025-10-12 15:31:04,336 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 11:31:37] 2025-10-12 15:31:04,336 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 11:31:37] 2025-10-12 15:31:04,337 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 11:31:37] 2025-10-12 15:31:30,881 | INFO     | [monitor] cgroup control has ended
[2025-10-12 11:31:37] 2025-10-12 15:31:32,140 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139694136346432)>', '<ExcThread(monitor, started 139693828052736)>']
[2025-10-12 11:31:37] 2025-10-12 15:31:32,473 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 11:31:37] 2025-10-12 15:31:32,473 | INFO     | [monitor] control thread has ended
[2025-10-12 11:31:37] 2025-10-12 15:31:37,145 | INFO     | all workflow threads have been joined
[2025-10-12 11:31:37] 2025-10-12 15:31:37,145 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 11:31:37] 2025-10-12 15:31:37,146 | INFO     | traces error code: 0
[2025-10-12 11:31:37] 2025-10-12 15:31:37,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 11:31:37] 2025-10-12 15:31:37,289 [wrapper] ==== pilot stdout END ====
[2025-10-12 11:31:37] 2025-10-12 15:31:37,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 11:31:37] 2025-10-12 15:31:37,298 [wrapper] pilotpid: 4389
[2025-10-12 11:31:37] 2025-10-12 15:31:37,303 [wrapper] Pilot exit status: 0
[2025-10-12 11:31:37] 2025-10-12 15:31:37,321 [wrapper] pandaids: 6839821844
[2025-10-12 11:31:37] 2025-10-12 15:31:37,374 [wrapper] cleanup supervisor_pilot 15713 4390
[2025-10-12 11:31:37] 2025-10-12 15:31:37,380 [wrapper] Test setup, not cleaning
[2025-10-12 11:31:37] 2025-10-12 15:31:37,385 [wrapper] apfmon messages muted
[2025-10-12 11:31:37] 2025-10-12 15:31:37,390 [wrapper] ==== wrapper stdout END ====
[2025-10-12 11:31:37] 2025-10-12 15:31:37,394 [wrapper] ==== wrapper stderr END ====
[2025-10-12 11:31:37]  *** Error codes and diagnostics ***
[2025-10-12 11:31:37]     "exeErrorCode": 0,
[2025-10-12 11:31:37]     "exeErrorDiag": "",
[2025-10-12 11:31:37]     "pilotErrorCode": 0,
[2025-10-12 11:31:37]     "pilotErrorDiag": "",
[2025-10-12 11:31:37]  *** Listing of results directory ***
[2025-10-12 11:31:37] total 418928
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas    557409 Oct 12 05:04 pilot3.tar.gz
[2025-10-12 11:31:37] -rwx------ 1 boincer umatlas     36292 Oct 12 05:16 runpilot2-wrapper.sh
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas      5112 Oct 12 05:16 queuedata.json
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas       100 Oct 12 09:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 11:31:37] -rwxr-xr-x 1 boincer umatlas      7986 Oct 12 09:23 run_atlas
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas       105 Oct 12 09:23 job.xml
[2025-10-12 11:31:37] -rw-r--r-- 2 boincer umatlas 223930483 Oct 12 09:23 EVNT.46676267._003567.pool.root.1
[2025-10-12 11:31:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 09:23 start_atlas.sh
[2025-10-12 11:31:37] drwxrwx--x 2 boincer umatlas      4096 Oct 12 09:23 shared
[2025-10-12 11:31:37] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 09:23 input.tar.gz
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas         0 Oct 12 09:23 boinc_lockfile
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas      2550 Oct 12 09:24 pandaJob.out
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas    975528 Oct 12 09:24 agis_schedconf.cvmfs.json
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas   1560580 Oct 12 09:24 agis_ddmendpoints.agis.ALL.json
[2025-10-12 11:31:37] drwx------ 5 boincer umatlas      4096 Oct 12 09:24 pilot3
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas      5909 Oct 12 11:27 init_data.xml
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas 198300990 Oct 12 11:29 HITS.46676269._075165.pool.root.1
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas       529 Oct 12 11:29 boinc_task_state.xml
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas        95 Oct 12 11:30 pilot_heartbeat.json
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas      1052 Oct 12 11:30 memory_monitor_summary.json
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas    357197 Oct 12 11:30 log.46676269._075165.job.log.tgz.1
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas      7850 Oct 12 11:30 heartbeat.json
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas      8192 Oct 12 11:31 boinc_mmap_file
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas        27 Oct 12 11:31 wrapper_checkpoint.txt
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas      4745 Oct 12 11:31 pilotlog.txt
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas   1066335 Oct 12 11:31 log.46676269._075165.job.log.1
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas       357 Oct 12 11:31 output.list
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas       620 Oct 12 11:31 runtime_log
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas   1443840 Oct 12 11:31 result.tar.gz
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas       659 Oct 12 11:31 y1PNDmCN7R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1JjNDmbv1d5m.diag
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas      8703 Oct 12 11:31 runtime_log.err
[2025-10-12 11:31:37] -rw-r--r-- 1 boincer umatlas     20851 Oct 12 11:31 stderr.txt
[2025-10-12 11:31:37] HITS file was successfully produced:
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas 198300990 Oct 12 11:29 shared/HITS.pool.root.1
[2025-10-12 11:31:37]  *** Contents of shared directory: ***
[2025-10-12 11:31:37] total 414328
[2025-10-12 11:31:37] -rw-r--r-- 2 boincer umatlas 223930483 Oct 12 09:23 ATLAS.root_0
[2025-10-12 11:31:37] -rw-r--r-- 2 boincer umatlas     15120 Oct 12 09:23 start_atlas.sh
[2025-10-12 11:31:37] -rw-r--r-- 2 boincer umatlas    569681 Oct 12 09:23 input.tar.gz
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas 198300990 Oct 12 11:29 HITS.pool.root.1
[2025-10-12 11:31:37] -rw------- 1 boincer umatlas   1443840 Oct 12 11:31 result.tar.gz
11:31:39 (441): run_atlas exited; CPU time 55345.982867
11:31:39 (441): called boinc_finish(0)

</stderr_txt>
]]>

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