Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:10:08 (555941): wrapper (7.7.26015): starting
05:10:08 (555941): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 05:10:08] Arguments: --nthreads 4
[2025-10-13 05:10:08] Threads: 4
[2025-10-13 05:10:08] Checking for CVMFS
[2025-10-13 05:10:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 05:10:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 05:10:08] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 05:10:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 05:10:09] 2.13.2.0 1261730 2806 51592 151629 1 188 3798126 6144001 1911 130560 0 7686896 99.997 88633 100 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.253:3128 1
[2025-10-13 05:10:09] CVMFS is ok
[2025-10-13 05:10:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 05:10:09] Checking for apptainer binary...
[2025-10-13 05:10:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 05:10:09] Running /usr/bin/apptainer --version
[2025-10-13 05:10:09] apptainer version 1.4.0
[2025-10-13 05:10:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 05:10:09] Zen
[2025-10-13 05:10:09] apptainer works
[2025-10-13 05:10:09] Set ATHENA_PROC_NUMBER=4
[2025-10-13 05:10:09] Set ATHENA_CORE_NUMBER=4
[2025-10-13 05:10:09] Starting ATLAS job with PandaID=6839591959
[2025-10-13 05:10:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/michael/Boinc/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 06:45:38]  *** The last 200 lines of the pilot log: ***
[2025-10-13 06:45:38]  status=None
[2025-10-13 06:45:38]  status_code=0
[2025-10-13 06:45:38]  storage_token=
[2025-10-13 06:45:38]  surl=/home/michael/Boinc/BOINC/slots/3/PanDA_Pilot-6839591959/log.46676269._073061.job.log.tgz.1
[2025-10-13 06:45:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/39/log.46676269._073061.job.log.tgz.1
[2025-10-13 06:45:38]  workdir=None
[2025-10-13 06:45:38] ]
[2025-10-13 06:45:38] 2025-10-12 19:45:00,396 | INFO     | transferring file log.46676269._073061.job.log.tgz.1 from /home/michael/Boinc/BOINC/slots/3/PanDA_Pilot-6839591959/log.46676269._073061.job.log.tgz.1 to /home/mich
[2025-10-13 06:45:38] 2025-10-12 19:45:00,396 | INFO     | executing command: /usr/bin/env mv /home/michael/Boinc/BOINC/slots/3/PanDA_Pilot-6839591959/log.46676269._073061.job.log.tgz.1 /home/michael/Boinc/BOINC/slots/3/lo
[2025-10-13 06:45:38] 2025-10-12 19:45:00,408 | INFO     | adding to output.list: log.46676269._073061.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/39/log.46676269._073061.job.log.tg
[2025-10-13 06:45:38] 2025-10-12 19:45:00,408 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 06:45:38] 2025-10-12 19:45:00,408 | INFO     | summary of transferred files:
[2025-10-13 06:45:38] 2025-10-12 19:45:00,409 | INFO     |  -- lfn=log.46676269._073061.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 06:45:38] 2025-10-12 19:45:00,409 | INFO     | stage-out finished correctly
[2025-10-13 06:45:38] 2025-10-12 19:45:00,816 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 06:45:38] 2025-10-12 19:45:00,962 | INFO     | time since job start (5681s) is within the limit (172800.0s)
[2025-10-13 06:45:38] 2025-10-12 19:45:02,084 | INFO     | PID=559747 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 06:45:38] 2025-10-12 19:45:02,084 | INFO     | .. there are 3 such processes running
[2025-10-13 06:45:38] 2025-10-12 19:45:02,596 | INFO     | monitor loop #431: job 0:6839591959 is in state 'finished'
[2025-10-13 06:45:38] 2025-10-12 19:45:02,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:45:38] 2025-10-12 19:45:02,863 | INFO     | job 6839591959 has state=finished
[2025-10-13 06:45:38] 2025-10-12 19:45:02,863 | INFO     | preparing for final server update for job 6839591959 in state='finished'
[2025-10-13 06:45:38] 2025-10-12 19:45:02,863 | INFO     | this job has now completed (state=finished)
[2025-10-13 06:45:38] 2025-10-12 19:45:02,863 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 06:45:38] 2025-10-12 19:45:02,863 | INFO     | log transfer has been attempted: DONE
[2025-10-13 06:45:38] 2025-10-12 19:45:02,863 | INFO     | job 6839591959 has finished - writing final server update
[2025-10-13 06:45:38] 2025-10-12 19:45:02,864 | INFO     | total number of processed events: 400 (read)
[2025-10-13 06:45:38] 2025-10-12 19:45:02,864 | INFO     | executing command: lscpu
[2025-10-13 06:45:38] 2025-10-12 19:45:02,886 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 06:45:38] 2025-10-12 19:45:03,084 | INFO     | time since job start (5684s) is within the limit (172800.0s)
[2025-10-13 06:45:38] 2025-10-12 19:45:05,099 | INFO     | monitor loop #432: job 0:6839591959 is in state 'finished'
[2025-10-13 06:45:38] 2025-10-12 19:45:05,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 06:45:38] 2025-10-12 19:45:05,101 | INFO     | time since job start (5686s) is within the limit (172800.0s)
[2025-10-13 06:45:38] 2025-10-12 19:45:05,324 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 06:45:38] 2025-10-12 19:45:05,327 | INFO     | found 12 cores (12 cores per socket, 1 socket) HT, CPU MHz: 4299.252625
[2025-10-13 06:45:38] 2025-10-12 19:45:05,329 | INFO     | using path: /home/michael/Boinc/BOINC/slots/3/PanDA_Pilot-6839591959/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 06:45:38] 2025-10-12 19:45:05,329 | INFO     | extracted standard info from prmon json
[2025-10-13 06:45:38] 2025-10-12 19:45:05,329 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 06:45:38] 2025-10-12 19:45:05,330 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 06:45:38] 2025-10-12 19:45:05,330 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 06:45:38] 2025-10-12 19:45:05,330 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 06:45:38] 2025-10-12 19:45:05,331 | INFO     | fitting pss+swap vs Time
[2025-10-13 06:45:38] 2025-10-12 19:45:05,331 | INFO     | sum of square deviations: 197203697.5
[2025-10-13 06:45:38] 2025-10-12 19:45:05,331 | INFO     | sum of deviations: 73979244.50000006
[2025-10-13 06:45:38] 2025-10-12 19:45:05,331 | INFO     | mean x: 1760295535.5
[2025-10-13 06:45:38] 2025-10-12 19:45:05,331 | INFO     | mean y: 2322544.6627906975
[2025-10-13 06:45:38] 2025-10-12 19:45:05,331 | INFO     | -- intersect: -658036948.9162434
[2025-10-13 06:45:38] 2025-10-12 19:45:05,331 | INFO     | intersect: -658036948.9162434
[2025-10-13 06:45:38] 2025-10-12 19:45:05,331 | INFO     | chi2: 0.004312590661588807
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | -- intersect: -658036948.9162434
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | current memory leak: 0.38 B/s (using 86 data points, chi2=0.00)
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | could have reported an average CPU frequency of 4282 MHz (7 samples)
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | ..............................
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | . Timing measurements:
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | . get job = 0 s
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | . initial setup = 5 s
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | . payload setup = 3 s
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | . stage-in = 0 s
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | . payload execution = 5659 s
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | . stage-out = 0 s
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | . log creation = 0 s
[2025-10-13 06:45:38] 2025-10-12 19:45:05,332 | INFO     | ..............................
[2025-10-13 06:45:38] 2025-10-12 19:45:05,505 | INFO     | 
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | job summary report
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | --------------------------------------------------
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | PanDA job id: 6839591959
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | task id: 46676269
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | errors: (none)
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | pilot state: finished 
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | transexitcode: 0
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | exeerrorcode: 0
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | exeerrordiag: 
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | exitcode: 0
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | exitmsg: OK
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | cpuconsumptiontime: 21721 s
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | nevents: 400
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | neventsw: 0
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | pid: 566319
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | pgrp: 566319
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | corecount: 4
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | event service: False
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | sizes: {0: 2348868, 2: 2349130, 11: 2349158, 5665: 2375934, 5666: 2375933, 5668: 2385193, 5673: 2385331}
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | --------------------------------------------------
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | 
[2025-10-13 06:45:38] 2025-10-12 19:45:05,506 | INFO     | executing command: ls -lF /home/michael/Boinc/BOINC/slots/3
[2025-10-13 06:45:38] 2025-10-12 19:45:05,522 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,522 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,522 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,522 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | job 6839591959 has completed (purged errors)
[2025-10-13 06:45:38] 2025-10-12 19:45:05,523 | INFO     | overall cleanup function is called
[2025-10-13 06:45:38] 2025-10-12 19:45:06,530 | INFO     | --- collectZombieJob: --- 10, [566319]
[2025-10-13 06:45:38] 2025-10-12 19:45:06,530 | INFO     | zombie collector waiting for pid 566319
[2025-10-13 06:45:38] 2025-10-12 19:45:06,531 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 06:45:38] 2025-10-12 19:45:06,531 | INFO     | collected zombie processes
[2025-10-13 06:45:38] 2025-10-12 19:45:06,531 | INFO     | will attempt to kill all subprocesses of pid=566319
[2025-10-13 06:45:38] 2025-10-12 19:45:06,636 | INFO     | process IDs to be killed: [566319] (in reverse order)
[2025-10-13 06:45:38] 2025-10-12 19:45:06,674 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 06:45:38] 2025-10-12 19:45:06,674 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 06:45:38] 2025-10-12 19:45:06,677 | INFO     | did not find any defunct processes belonging to 566319
[2025-10-13 06:45:38] 2025-10-12 19:45:06,678 | INFO     | did not find any defunct processes belonging to 566319
[2025-10-13 06:45:38] 2025-10-12 19:45:06,679 | INFO     | ready for new job
[2025-10-13 06:45:38] 2025-10-12 19:45:06,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 06:45:38] 2025-10-12 19:45:06,679 | INFO     | ***************************************
[2025-10-13 06:45:38] 2025-10-12 19:45:06,680 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 06:45:38] 2025-10-12 19:45:06,680 | INFO     | ***************************************
[2025-10-13 06:45:38] 2025-10-12 19:45:06,680 | INFO     | 
[2025-10-13 06:45:38] 2025-10-12 19:45:06,680 | INFO     | architecture information:
[2025-10-13 06:45:38] 2025-10-12 19:45:06,680 | INFO     | executing command: cat /etc/os-release
[2025-10-13 06:45:38] 2025-10-12 19:45:06,692 | INFO     | cat /etc/os-release:
[2025-10-13 06:45:38] NAME="CentOS Linux"
[2025-10-13 06:45:38] VERSION="7 (Core)"
[2025-10-13 06:45:38] ID="centos"
[2025-10-13 06:45:38] ID_LIKE="rhel fedora"
[2025-10-13 06:45:38] VERSION_ID="7"
[2025-10-13 06:45:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 06:45:38] ANSI_COLOR="0;31"
[2025-10-13 06:45:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 06:45:38] HOME_URL="https://www.centos.org/"
[2025-10-13 06:45:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 06:45:38] 
[2025-10-13 06:45:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 06:45:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 06:45:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 06:45:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 06:45:38] 
[2025-10-13 06:45:38] 2025-10-12 19:45:06,692 | INFO     | ***************************************
[2025-10-13 06:45:38] 2025-10-12 19:45:07,195 | INFO     | executing command: df -mP /home/michael/Boinc/BOINC/slots/3
[2025-10-13 06:45:38] 2025-10-12 19:45:07,212 | INFO     | sufficient remaining disk space (207112634368 B)
[2025-10-13 06:45:38] 2025-10-12 19:45:07,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 06:45:38] 2025-10-12 19:45:07,213 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 06:45:38] 2025-10-12 19:45:07,213 | INFO     | update_server=False
[2025-10-13 06:45:38] 2025-10-12 19:45:07,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 06:45:38] 2025-10-12 19:45:07,213 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:45:38] 2025-10-12 19:45:07,213 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 06:45:38] 2025-10-12 19:45:07,603 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-13 06:45:38] 2025-10-12 19:45:07,603 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-13 06:45:38] 2025-10-12 19:45:07,603 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 06:45:38] 2025-10-12 19:45:07,603 | INFO     | will abort loop
[2025-10-13 06:45:38] 2025-10-12 19:45:07,796 | INFO     | all data control threads have been joined
[2025-10-13 06:45:38] 2025-10-12 19:45:08,103 | INFO     | all payload control threads have been joined
[2025-10-13 06:45:38] 2025-10-12 19:45:08,205 | INFO     | all job control threads have been joined
[2025-10-13 06:45:38] 2025-10-12 19:45:08,217 | INFO     | [job] retrieve thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:08,218 | INFO     | [job] queue monitor thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:08,479 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 06:45:38] 2025-10-12 19:45:08,493 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:08,497 | INFO     | [job] validate thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:08,607 | INFO     | [job] job monitor thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:08,687 | INFO     | [payload] failed_post thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:08,801 | INFO     | [data] control thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:08,999 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:09,004 | INFO     | [data] copytool_in thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:09,108 | INFO     | [payload] control thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:09,207 | INFO     | [job] control thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:09,249 | INFO     | [payload] validate_post thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:09,605 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:10,483 | INFO     | [data] copytool_out thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:11,217 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:17,536 | INFO     | job.realtimelogging is not enabled
[2025-10-13 06:45:38] 2025-10-12 19:45:18,541 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 06:45:38] 2025-10-12 19:45:27,885 | INFO     | [monitor] cgroup control has ended
[2025-10-13 06:45:38] 2025-10-12 19:45:29,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 126627075663680)>', '<ExcThread(monitor, started 126626786408192)>']
[2025-10-13 06:45:38] 2025-10-12 19:45:34,879 | INFO     | all workflow threads have been joined
[2025-10-13 06:45:38] 2025-10-12 19:45:34,879 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 06:45:38] 2025-10-12 19:45:34,910 | INFO     | traces error code: 0
[2025-10-13 06:45:38] 2025-10-12 19:45:34,910 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 06:45:38] 2025-10-12 19:45:38,266 | INFO     | PID=559747 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 06:45:38] 2025-10-12 19:45:38,266 | INFO     | .. there are 3 such processes running
[2025-10-13 06:45:38] 2025-10-12 19:45:38,266 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 06:45:38] 2025-10-12 19:45:38,266 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 06:45:38] 2025-10-12 19:45:38,266 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 06:45:38] 2025-10-12 19:45:38,266 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 06:45:38] 2025-10-12 19:45:38,267 | INFO     | [monitor] control thread has ended
[2025-10-13 06:45:38] 2025-10-12 19:45:38,328 [wrapper] ==== pilot stdout END ====
[2025-10-13 06:45:38] 2025-10-12 19:45:38,330 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 06:45:38] 2025-10-12 19:45:38,333 [wrapper] pilotpid: 559747
[2025-10-13 06:45:38] 2025-10-12 19:45:38,335 [wrapper] Pilot exit status: 0
[2025-10-13 06:45:38] 2025-10-12 19:45:38,341 [wrapper] pandaids: 6839591959
[2025-10-13 06:45:38] 2025-10-12 19:45:38,370 [wrapper] cleanup supervisor_pilot  664069 559748
[2025-10-13 06:45:38] 2025-10-12 19:45:38,372 [wrapper] Test setup, not cleaning
[2025-10-13 06:45:38] 2025-10-12 19:45:38,375 [wrapper] apfmon messages muted
[2025-10-13 06:45:38] 2025-10-12 19:45:38,377 [wrapper] ==== wrapper stdout END ====
[2025-10-13 06:45:38] 2025-10-12 19:45:38,378 [wrapper] ==== wrapper stderr END ====
[2025-10-13 06:45:38]  *** Error codes and diagnostics ***
[2025-10-13 06:45:38]     "exeErrorCode": 0,
[2025-10-13 06:45:38]     "exeErrorDiag": "",
[2025-10-13 06:45:38]     "pilotErrorCode": 0,
[2025-10-13 06:45:38]     "pilotErrorDiag": "",
[2025-10-13 06:45:38]  *** Listing of results directory ***
[2025-10-13 06:45:38] total 408544
[2025-10-13 06:45:38] -rw-r--r-- 1 michael michael      5112 Oct 12 17:43 queuedata.json
[2025-10-13 06:45:38] -rw-r--r-- 1 michael michael    557409 Oct 12 17:44 pilot3.tar.gz
[2025-10-13 06:45:38] -rwx------ 1 michael michael     36292 Oct 12 17:44 runpilot2-wrapper.sh
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael       100 Oct 13 05:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 06:45:38] -rwxr-xr-x 1 michael michael      7986 Oct 13 05:10 run_atlas
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael       105 Oct 13 05:10 job.xml
[2025-10-13 06:45:38] -rw-r--r-- 2 michael michael 219311979 Oct 13 05:10 EVNT.46676267._004525.pool.root.1
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael      9816 Oct 13 05:10 init_data.xml
[2025-10-13 06:45:38] drwxrwx--x 2 michael michael      4096 Oct 13 05:10 shared
[2025-10-13 06:45:38] -rw-r--r-- 2 michael michael    569679 Oct 13 05:10 input.tar.gz
[2025-10-13 06:45:38] -rw-r--r-- 2 michael michael     15120 Oct 13 05:10 start_atlas.sh
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael         0 Oct 13 05:10 boinc_lockfile
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael      2550 Oct 13 05:10 pandaJob.out
[2025-10-13 06:45:38] -rw------- 1 michael michael    975528 Oct 13 05:10 agis_schedconf.cvmfs.json
[2025-10-13 06:45:38] -rw------- 1 michael michael   1560580 Oct 13 05:10 agis_ddmendpoints.agis.ALL.json
[2025-10-13 06:45:38] drwx------ 5 michael michael      4096 Oct 13 05:10 pilot3
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael       530 Oct 13 06:44 boinc_task_state.xml
[2025-10-13 06:45:38] -rw------- 1 michael michael 192853092 Oct 13 06:44 HITS.46676269._073061.pool.root.1
[2025-10-13 06:45:38] -rw------- 1 michael michael      1023 Oct 13 06:44 memory_monitor_summary.json
[2025-10-13 06:45:38] -rw------- 1 michael michael    289428 Oct 13 06:45 log.46676269._073061.job.log.tgz.1
[2025-10-13 06:45:38] -rw------- 1 michael michael        95 Oct 13 06:45 pilot_heartbeat.json
[2025-10-13 06:45:38] -rw------- 1 michael michael      7723 Oct 13 06:45 heartbeat.json
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael      8192 Oct 13 06:45 boinc_mmap_file
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael        27 Oct 13 06:45 wrapper_checkpoint.txt
[2025-10-13 06:45:38] -rw------- 1 michael michael       821 Oct 13 06:45 pilotlog.txt
[2025-10-13 06:45:38] -rw------- 1 michael michael    850882 Oct 13 06:45 log.46676269._073061.job.log.1
[2025-10-13 06:45:38] -rw------- 1 michael michael       357 Oct 13 06:45 output.list
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael       620 Oct 13 06:45 runtime_log
[2025-10-13 06:45:38] -rw------- 1 michael michael   1157120 Oct 13 06:45 result.tar.gz
[2025-10-13 06:45:38] -rw------- 1 michael michael       641 Oct 13 06:45 Z66NDmI04R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtuiNDm36ktWo.diag
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael      8797 Oct 13 06:45 runtime_log.err
[2025-10-13 06:45:38] -rw-rw-r-- 1 michael michael     21753 Oct 13 06:45 stderr.txt
[2025-10-13 06:45:38] HITS file was successfully produced:
[2025-10-13 06:45:38] -rw------- 1 michael michael 192853092 Oct 13 06:44 shared/HITS.pool.root.1
[2025-10-13 06:45:38]  *** Contents of shared directory: ***
[2025-10-13 06:45:38] total 404224
[2025-10-13 06:45:38] -rw-r--r-- 2 michael michael 219311979 Oct 13 05:10 ATLAS.root_0
[2025-10-13 06:45:38] -rw-r--r-- 2 michael michael    569679 Oct 13 05:10 input.tar.gz
[2025-10-13 06:45:38] -rw-r--r-- 2 michael michael     15120 Oct 13 05:10 start_atlas.sh
[2025-10-13 06:45:38] -rw------- 1 michael michael 192853092 Oct 13 06:44 HITS.pool.root.1
[2025-10-13 06:45:38] -rw------- 1 michael michael   1157120 Oct 13 06:45 result.tar.gz
06:45:39 (555941): run_atlas exited; CPU time 21767.745490
06:45:39 (555941): called boinc_finish(0)

</stderr_txt>
]]>

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