Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:54:35 (3259383): wrapper (7.7.26015): starting
23:54:35 (3259383): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 23:54:35] Arguments: --nthreads 3
[2025-10-12 23:54:35] Threads: 3
[2025-10-12 23:54:35] Checking for CVMFS
[2025-10-12 23:54:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 23:54:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 23:54:35] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 23:54:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 23:54:35] 2.9.2.0 1859496 4551 84332 151638 1 57 29725403 36864001 0 130560 0 3675512 99.991 161080 907 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 23:54:35] CVMFS is ok
[2025-10-12 23:54:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 23:54:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 23:54:35] Further information can be found at the LHC@home message board.
[2025-10-12 23:54:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 23:54:35] Checking for apptainer binary...
[2025-10-12 23:54:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 23:54:35] Running /usr/bin/apptainer --version
[2025-10-12 23:54:35] apptainer version 1.4.1-1.1
[2025-10-12 23:54:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 23:54:35] atlasA228b
[2025-10-12 23:54:35] apptainer works
[2025-10-12 23:54:35] Set ATHENA_PROC_NUMBER=3
[2025-10-12 23:54:35] Set ATHENA_CORE_NUMBER=3
[2025-10-12 23:54:35] Starting ATLAS job with PandaID=6839591853
[2025-10-12 23:54:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 01:16:52]  *** The last 200 lines of the pilot log: ***
[2025-10-13 01:16:52] 2025-10-12 23:16:18,325 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 01:16:52] 2025-10-12 23:16:18,325 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 01:16:52] 2025-10-12 23:16:18,325 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 01:16:52] 2025-10-12 23:16:18,325 | INFO     | job 6839591853 has completed (purged errors)
[2025-10-13 01:16:52] 2025-10-12 23:16:18,325 | INFO     | overall cleanup function is called
[2025-10-13 01:16:52] 2025-10-12 23:16:19,332 | INFO     | --- collectZombieJob: --- 10, [3269538]
[2025-10-13 01:16:52] 2025-10-12 23:16:19,332 | INFO     | zombie collector waiting for pid 3269538
[2025-10-13 01:16:52] 2025-10-12 23:16:19,332 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 01:16:52] 2025-10-12 23:16:19,332 | INFO     | collected zombie processes
[2025-10-13 01:16:52] 2025-10-12 23:16:19,332 | INFO     | will attempt to kill all subprocesses of pid=3269538
[2025-10-13 01:16:52] 2025-10-12 23:16:19,376 | INFO     | process IDs to be killed: [3269538] (in reverse order)
[2025-10-13 01:16:52] 2025-10-12 23:16:19,403 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 01:16:52] 2025-10-12 23:16:19,403 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 01:16:52] 2025-10-12 23:16:19,404 | INFO     | did not find any defunct processes belonging to 3269538
[2025-10-13 01:16:52] 2025-10-12 23:16:19,406 | INFO     | did not find any defunct processes belonging to 3269538
[2025-10-13 01:16:52] 2025-10-12 23:16:19,406 | INFO     | ready for new job
[2025-10-13 01:16:52] 2025-10-12 23:16:19,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 01:16:52] 2025-10-12 23:16:19,406 | INFO     | ***************************************
[2025-10-13 01:16:52] 2025-10-12 23:16:19,407 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 01:16:52] 2025-10-12 23:16:19,407 | INFO     | ***************************************
[2025-10-13 01:16:52] 2025-10-12 23:16:19,407 | INFO     | 
[2025-10-13 01:16:52] 2025-10-12 23:16:19,407 | INFO     | architecture information:
[2025-10-13 01:16:52] 2025-10-12 23:16:19,407 | INFO     | executing command: cat /etc/os-release
[2025-10-13 01:16:52] 2025-10-12 23:16:19,417 | INFO     | cat /etc/os-release:
[2025-10-13 01:16:52] NAME="CentOS Linux"
[2025-10-13 01:16:52] VERSION="7 (Core)"
[2025-10-13 01:16:52] ID="centos"
[2025-10-13 01:16:52] ID_LIKE="rhel fedora"
[2025-10-13 01:16:52] VERSION_ID="7"
[2025-10-13 01:16:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 01:16:52] ANSI_COLOR="0;31"
[2025-10-13 01:16:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 01:16:52] HOME_URL="https://www.centos.org/"
[2025-10-13 01:16:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 01:16:52] 
[2025-10-13 01:16:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 01:16:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 01:16:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 01:16:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 01:16:52] 
[2025-10-13 01:16:52] 2025-10-12 23:16:19,417 | INFO     | ***************************************
[2025-10-13 01:16:52] 2025-10-12 23:16:19,921 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 01:16:52] 2025-10-12 23:16:19,934 | INFO     | sufficient remaining disk space (274825478144 B)
[2025-10-13 01:16:52] 2025-10-12 23:16:19,934 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 01:16:52] 2025-10-12 23:16:19,934 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 01:16:52] 2025-10-12 23:16:19,935 | INFO     | update_server=False
[2025-10-13 01:16:52] 2025-10-12 23:16:19,935 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 01:16:52] 2025-10-12 23:16:19,935 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:16:52] 2025-10-12 23:16:19,935 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 01:16:52] 2025-10-12 23:16:19,935 | INFO     | aborting loop
[2025-10-13 01:16:52] 2025-10-12 23:16:19,935 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 01:16:52] 2025-10-12 23:16:20,074 | INFO     | all payload control threads have been joined
[2025-10-13 01:16:52] 2025-10-12 23:16:20,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 01:16:52] 2025-10-12 23:16:20,477 | INFO     | all job control threads have been joined
[2025-10-13 01:16:52] 2025-10-12 23:16:20,940 | INFO     | [job] retrieve thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:20,941 | INFO     | [job] job monitor thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:20,941 | INFO     | [job] queue monitor thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:20,989 | INFO     | all data control threads have been joined
[2025-10-13 01:16:52] 2025-10-12 23:16:21,075 | INFO     | [payload] control thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,290 | INFO     | [data] copytool_in thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,483 | INFO     | [job] control thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,604 | INFO     | [job] validate thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,604 | INFO     | [payload] validate_post thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,660 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,755 | INFO     | [payload] failed_post thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,798 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,941 | INFO     | [data] copytool_out thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:21,994 | INFO     | [data] control thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:22,369 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:24,243 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 01:16:52] 2025-10-12 23:16:46,827 | INFO     | [monitor] cgroup control has ended
[2025-10-13 01:16:52] 2025-10-12 23:16:47,453 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139702761613120)>', '<ExcThread(monitor, started 139702132799232)>']
[2025-10-13 01:16:52] 2025-10-12 23:16:50,388 | INFO     | PID=3263104 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 01:16:52] 2025-10-12 23:16:50,388 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 01:16:52] 2025-10-12 23:16:50,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 01:16:52] 2025-10-12 23:16:50,389 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 01:16:52] 2025-10-12 23:16:50,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 01:16:52] 2025-10-12 23:16:50,389 | INFO     | [monitor] control thread has ended
[2025-10-13 01:16:52] 2025-10-12 23:16:52,479 | INFO     | all workflow threads have been joined
[2025-10-13 01:16:52] 2025-10-12 23:16:52,479 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 01:16:52] 2025-10-12 23:16:52,479 | INFO     | traces error code: 0
[2025-10-13 01:16:52] 2025-10-12 23:16:52,480 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 01:16:52] 2025-10-12 23:16:52,531 [wrapper] ==== pilot stdout END ====
[2025-10-13 01:16:52] 2025-10-12 23:16:52,534 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 01:16:52] 2025-10-12 23:16:52,537 [wrapper] pilotpid: 3263104
[2025-10-13 01:16:52] 2025-10-12 23:16:52,539 [wrapper] Pilot exit status: 0
[2025-10-13 01:16:52] 2025-10-12 23:16:52,547 [wrapper] pandaids: 6839591853
[2025-10-13 01:16:52] 2025-10-12 23:16:52,565 [wrapper] cleanup supervisor_pilot 3281583 3263105
[2025-10-13 01:16:52] 2025-10-12 23:16:52,567 [wrapper] Test setup, not cleaning
[2025-10-13 01:16:52] 2025-10-12 23:16:52,570 [wrapper] apfmon messages muted
[2025-10-13 01:16:52] 2025-10-12 23:16:52,572 [wrapper] ==== wrapper stdout END ====
[2025-10-13 01:16:52] 2025-10-12 23:16:52,575 [wrapper] ==== wrapper stderr END ====
[2025-10-13 01:16:52]  *** Error codes and diagnostics ***
[2025-10-13 01:16:52]     "exeErrorCode": 0,
[2025-10-13 01:16:52]     "exeErrorDiag": "",
[2025-10-13 01:16:52]     "pilotErrorCode": 0,
[2025-10-13 01:16:52]     "pilotErrorDiag": "",
[2025-10-13 01:16:52]  *** Listing of results directory ***
[2025-10-13 01:16:52] total 411956
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:44 pilot3.tar.gz
[2025-10-13 01:16:52] -rwx------ 1 boinc boinc     36292 Oct 12 08:45 runpilot2-wrapper.sh
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:45 queuedata.json
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc       100 Oct 12 23:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 01:16:52] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 23:54 run_atlas
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc       105 Oct 12 23:54 job.xml
[2025-10-13 01:16:52] -rw-r--r-- 2 boinc boinc 219963052 Oct 12 23:54 EVNT.46676267._004521.pool.root.1
[2025-10-13 01:16:52] -rw-r--r-- 2 boinc boinc    569675 Oct 12 23:54 input.tar.gz
[2025-10-13 01:16:52] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:54 start_atlas.sh
[2025-10-13 01:16:52] drwxrwx--x 2 boinc boinc      4096 Oct 12 23:54 shared
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:54 boinc_setup_complete
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc      6449 Oct 12 23:54 init_data.xml
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc         0 Oct 12 23:54 boinc_lockfile
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc      2550 Oct 12 23:54 pandaJob.out
[2025-10-13 01:16:52] -rw------- 1 boinc boinc    975528 Oct 12 23:54 agis_schedconf.cvmfs.json
[2025-10-13 01:16:52] -rw------- 1 boinc boinc   1560580 Oct 12 23:54 agis_ddmendpoints.agis.ALL.json
[2025-10-13 01:16:52] drwx------ 5 boinc boinc      4096 Oct 12 23:54 pilot3
[2025-10-13 01:16:52] -rw------- 1 boinc boinc 196041276 Oct 13 01:15 HITS.46676269._072955.pool.root.1
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc       529 Oct 13 01:15 boinc_task_state.xml
[2025-10-13 01:16:52] -rw------- 1 boinc boinc        95 Oct 13 01:16 pilot_heartbeat.json
[2025-10-13 01:16:52] -rw------- 1 boinc boinc      1014 Oct 13 01:16 memory_monitor_summary.json
[2025-10-13 01:16:52] -rw------- 1 boinc boinc    251381 Oct 13 01:16 log.46676269._072955.job.log.tgz.1
[2025-10-13 01:16:52] -rw------- 1 boinc boinc      7767 Oct 13 01:16 heartbeat.json
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc      8192 Oct 13 01:16 boinc_mmap_file
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc        27 Oct 13 01:16 wrapper_checkpoint.txt
[2025-10-13 01:16:52] -rw------- 1 boinc boinc      4752 Oct 13 01:16 pilotlog.txt
[2025-10-13 01:16:52] -rw------- 1 boinc boinc    720530 Oct 13 01:16 log.46676269._072955.job.log.1
[2025-10-13 01:16:52] -rw------- 1 boinc boinc       357 Oct 13 01:16 output.list
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc       620 Oct 13 01:16 runtime_log
[2025-10-13 01:16:52] -rw------- 1 boinc boinc    993280 Oct 13 01:16 result.tar.gz
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc      8797 Oct 13 01:16 runtime_log.err
[2025-10-13 01:16:52] -rw------- 1 boinc boinc       662 Oct 13 01:16 YoqLDmx04R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm1uiNDm84pYwm.diag
[2025-10-13 01:16:52] -rw-r--r-- 1 boinc boinc     11114 Oct 13 01:16 stderr.txt
[2025-10-13 01:16:52] HITS file was successfully produced:
[2025-10-13 01:16:52] -rw------- 1 boinc boinc 196041276 Oct 13 01:15 shared/HITS.pool.root.1
[2025-10-13 01:16:52]  *** Contents of shared directory: ***
[2025-10-13 01:16:52] total 407812
[2025-10-13 01:16:52] -rw-r--r-- 2 boinc boinc 219963052 Oct 12 23:54 ATLAS.root_0
[2025-10-13 01:16:52] -rw-r--r-- 2 boinc boinc    569675 Oct 12 23:54 input.tar.gz
[2025-10-13 01:16:52] -rw-r--r-- 2 boinc boinc     15120 Oct 12 23:54 start_atlas.sh
[2025-10-13 01:16:52] -rw------- 1 boinc boinc 196041276 Oct 13 01:15 HITS.pool.root.1
[2025-10-13 01:16:52] -rw------- 1 boinc boinc    993280 Oct 13 01:16 result.tar.gz
01:16:53 (3259383): run_atlas exited; CPU time 13962.584486
01:16:53 (3259383): called boinc_finish(0)

</stderr_txt>
]]>

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