Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:42 (1156008): wrapper (7.7.26015): starting
00:58:42 (1156008): wrapper: running run_atlas (--nthreads 4)
[2025-10-13 00:58:42] Arguments: --nthreads 4
[2025-10-13 00:58:42] Threads: 4
[2025-10-13 00:58:42] Checking for CVMFS
[2025-10-13 00:58:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:58:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:58:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:58:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:58:42] 2.9.2.0 3100 3316 96260 151640 1 57 31123970 36864001 0 130560 0 3011940 99.992 117479 823 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 00:58:42] CVMFS is ok
[2025-10-13 00:58:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:58:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:58:42] Further information can be found at the LHC@home message board.
[2025-10-13 00:58:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:58:42] Checking for apptainer binary...
[2025-10-13 00:58:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:58:42] Running /usr/bin/apptainer --version
[2025-10-13 00:58:42] apptainer version 1.4.1-1.1
[2025-10-13 00:58:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:58:42] thA338
[2025-10-13 00:58:42] apptainer works
[2025-10-13 00:58:42] Set ATHENA_PROC_NUMBER=4
[2025-10-13 00:58:42] Set ATHENA_CORE_NUMBER=4
[2025-10-13 00:58:42] Starting ATLAS job with PandaID=6839475120
[2025-10-13 00:58:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:09:00]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:09:00] 2025-10-13 00:08:29,298 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:09:00] 2025-10-13 00:08:29,298 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:09:00] 2025-10-13 00:08:29,298 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:09:00] 2025-10-13 00:08:29,298 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:09:00] 2025-10-13 00:08:29,298 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:09:00] 2025-10-13 00:08:29,298 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:09:00] 2025-10-13 00:08:29,298 | INFO     | job 6839475120 has completed (purged errors)
[2025-10-13 02:09:00] 2025-10-13 00:08:29,298 | INFO     | overall cleanup function is called
[2025-10-13 02:09:00] 2025-10-13 00:08:30,305 | INFO     | --- collectZombieJob: --- 10, [1166379]
[2025-10-13 02:09:00] 2025-10-13 00:08:30,305 | INFO     | zombie collector waiting for pid 1166379
[2025-10-13 02:09:00] 2025-10-13 00:08:30,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:09:00] 2025-10-13 00:08:30,305 | INFO     | collected zombie processes
[2025-10-13 02:09:00] 2025-10-13 00:08:30,305 | INFO     | will attempt to kill all subprocesses of pid=1166379
[2025-10-13 02:09:00] 2025-10-13 00:08:30,349 | INFO     | process IDs to be killed: [1166379] (in reverse order)
[2025-10-13 02:09:00] 2025-10-13 00:08:30,380 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:09:00] 2025-10-13 00:08:30,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:09:00] 2025-10-13 00:08:30,382 | INFO     | did not find any defunct processes belonging to 1166379
[2025-10-13 02:09:00] 2025-10-13 00:08:30,383 | INFO     | did not find any defunct processes belonging to 1166379
[2025-10-13 02:09:00] 2025-10-13 00:08:30,383 | INFO     | ready for new job
[2025-10-13 02:09:00] 2025-10-13 00:08:30,383 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:09:00] 2025-10-13 00:08:30,384 | INFO     | ***************************************
[2025-10-13 02:09:00] 2025-10-13 00:08:30,384 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:09:00] 2025-10-13 00:08:30,384 | INFO     | ***************************************
[2025-10-13 02:09:00] 2025-10-13 00:08:30,384 | INFO     | 
[2025-10-13 02:09:00] 2025-10-13 00:08:30,384 | INFO     | architecture information:
[2025-10-13 02:09:00] 2025-10-13 00:08:30,385 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:09:00] 2025-10-13 00:08:30,398 | INFO     | cat /etc/os-release:
[2025-10-13 02:09:00] NAME="CentOS Linux"
[2025-10-13 02:09:00] VERSION="7 (Core)"
[2025-10-13 02:09:00] ID="centos"
[2025-10-13 02:09:00] ID_LIKE="rhel fedora"
[2025-10-13 02:09:00] VERSION_ID="7"
[2025-10-13 02:09:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:09:00] ANSI_COLOR="0;31"
[2025-10-13 02:09:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:09:00] HOME_URL="https://www.centos.org/"
[2025-10-13 02:09:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:09:00] 
[2025-10-13 02:09:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:09:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:09:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:09:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:09:00] 
[2025-10-13 02:09:00] 2025-10-13 00:08:30,398 | INFO     | ***************************************
[2025-10-13 02:09:00] 2025-10-13 00:08:30,901 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 02:09:00] 2025-10-13 00:08:30,918 | INFO     | sufficient remaining disk space (228121903104 B)
[2025-10-13 02:09:00] 2025-10-13 00:08:30,918 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:09:00] 2025-10-13 00:08:30,918 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:09:00] 2025-10-13 00:08:30,918 | INFO     | update_server=False
[2025-10-13 02:09:00] 2025-10-13 00:08:30,918 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:09:00] 2025-10-13 00:08:30,918 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:09:00] 2025-10-13 00:08:30,918 | INFO     | aborting loop
[2025-10-13 02:09:00] 2025-10-13 00:08:30,918 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:09:00] 2025-10-13 00:08:31,003 | INFO     | all data control threads have been joined
[2025-10-13 02:09:00] 2025-10-13 00:08:31,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:09:00] 2025-10-13 00:08:31,317 | INFO     | all payload control threads have been joined
[2025-10-13 02:09:00] 2025-10-13 00:08:31,724 | INFO     | all job control threads have been joined
[2025-10-13 02:09:00] 2025-10-13 00:08:31,924 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:31,924 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:31,924 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:32,009 | INFO     | [data] control thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:32,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:09:00] 2025-10-13 00:08:32,208 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:32,323 | INFO     | [payload] control thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:32,730 | INFO     | [job] control thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:32,761 | INFO     | [job] validate thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:32,850 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:32,902 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:32,946 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:32,989 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:33,123 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:33,194 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:33,492 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:36,056 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:09:00] 2025-10-13 00:08:54,746 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:09:00] 2025-10-13 00:08:55,421 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139850531678016)>', '<ExcThread(monitor, started 139849436755712)>']
[2025-10-13 02:09:00] 2025-10-13 00:09:00,446 | INFO     | all workflow threads have been joined
[2025-10-13 02:09:00] 2025-10-13 00:09:00,447 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:09:00] 2025-10-13 00:09:00,447 | INFO     | traces error code: 0
[2025-10-13 02:09:00] 2025-10-13 00:09:00,447 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:09:00] 2025-10-13 00:09:00,691 | INFO     | PID=1159807 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 02:09:00] 2025-10-13 00:09:00,692 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:09:00] 2025-10-13 00:09:00,692 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:09:00] 2025-10-13 00:09:00,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:09:00] 2025-10-13 00:09:00,692 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:09:00] 2025-10-13 00:09:00,692 | INFO     | [monitor] control thread has ended
[2025-10-13 02:09:00] 2025-10-13 00:09:00,767 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:09:00] 2025-10-13 00:09:00,771 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:09:00] 2025-10-13 00:09:00,775 [wrapper] pilotpid: 1159807
[2025-10-13 02:09:00] 2025-10-13 00:09:00,779 [wrapper] Pilot exit status: 0
[2025-10-13 02:09:00] 2025-10-13 00:09:00,789 [wrapper] pandaids: 6839475120
[2025-10-13 02:09:00] 2025-10-13 00:09:00,810 [wrapper] cleanup supervisor_pilot 1176005 1159808
[2025-10-13 02:09:00] 2025-10-13 00:09:00,814 [wrapper] Test setup, not cleaning
[2025-10-13 02:09:00] 2025-10-13 00:09:00,818 [wrapper] apfmon messages muted
[2025-10-13 02:09:00] 2025-10-13 00:09:00,821 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:09:00] 2025-10-13 00:09:00,824 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:09:00]  *** Error codes and diagnostics ***
[2025-10-13 02:09:00]     "exeErrorCode": 0,
[2025-10-13 02:09:00]     "exeErrorDiag": "",
[2025-10-13 02:09:00]     "pilotErrorCode": 0,
[2025-10-13 02:09:00]     "pilotErrorDiag": "",
[2025-10-13 02:09:00]  *** Listing of results directory ***
[2025-10-13 02:09:00] total 406108
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc      5112 Oct 12 07:26 queuedata.json
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc    557409 Oct 12 07:26 pilot3.tar.gz
[2025-10-13 02:09:00] -rwx------ 1 boinc boinc     36292 Oct 12 07:26 runpilot2-wrapper.sh
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc       100 Oct 13 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:09:00] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 00:58 run_atlas
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc       105 Oct 13 00:58 job.xml
[2025-10-13 02:09:00] -rw-r--r-- 2 boinc boinc 219913833 Oct 13 00:58 EVNT.46676267._004319.pool.root.1
[2025-10-13 02:09:00] -rw-r--r-- 2 boinc boinc    569674 Oct 13 00:58 input.tar.gz
[2025-10-13 02:09:00] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:58 start_atlas.sh
[2025-10-13 02:09:00] drwxrwx--x 2 boinc boinc      4096 Oct 13 00:58 shared
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:58 boinc_setup_complete
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc      6375 Oct 13 00:58 init_data.xml
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:58 boinc_lockfile
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc      2550 Oct 13 00:58 pandaJob.out
[2025-10-13 02:09:00] -rw------- 1 boinc boinc    975603 Oct 13 00:58 agis_schedconf.cvmfs.json
[2025-10-13 02:09:00] -rw------- 1 boinc boinc   1560580 Oct 13 00:58 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:09:00] drwx------ 5 boinc boinc      4096 Oct 13 00:58 pilot3
[2025-10-13 02:09:00] -rw------- 1 boinc boinc 190311609 Oct 13 02:08 HITS.46676269._071854.pool.root.1
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc       529 Oct 13 02:08 boinc_task_state.xml
[2025-10-13 02:09:00] -rw------- 1 boinc boinc        95 Oct 13 02:08 pilot_heartbeat.json
[2025-10-13 02:09:00] -rw------- 1 boinc boinc      1022 Oct 13 02:08 memory_monitor_summary.json
[2025-10-13 02:09:00] -rw------- 1 boinc boinc    249498 Oct 13 02:08 log.46676269._071854.job.log.tgz.1
[2025-10-13 02:09:00] -rw------- 1 boinc boinc      7774 Oct 13 02:08 heartbeat.json
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc      8192 Oct 13 02:08 boinc_mmap_file
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc        27 Oct 13 02:08 wrapper_checkpoint.txt
[2025-10-13 02:09:00] -rw------- 1 boinc boinc       747 Oct 13 02:09 pilotlog.txt
[2025-10-13 02:09:00] -rw------- 1 boinc boinc    621996 Oct 13 02:09 log.46676269._071854.job.log.1
[2025-10-13 02:09:00] -rw------- 1 boinc boinc       357 Oct 13 02:09 output.list
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc       620 Oct 13 02:09 runtime_log
[2025-10-13 02:09:00] -rw------- 1 boinc boinc    890880 Oct 13 02:09 result.tar.gz
[2025-10-13 02:09:00] -rw------- 1 boinc boinc       658 Oct 13 02:09 ycNLDm1l3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmYjiNDmvj72rn.diag
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc      8777 Oct 13 02:09 runtime_log.err
[2025-10-13 02:09:00] -rw-r--r-- 1 boinc boinc     11414 Oct 13 02:09 stderr.txt
[2025-10-13 02:09:00] HITS file was successfully produced:
[2025-10-13 02:09:00] -rw------- 1 boinc boinc 190311609 Oct 13 02:08 shared/HITS.pool.root.1
[2025-10-13 02:09:00]  *** Contents of shared directory: ***
[2025-10-13 02:09:00] total 402068
[2025-10-13 02:09:00] -rw-r--r-- 2 boinc boinc 219913833 Oct 13 00:58 ATLAS.root_0
[2025-10-13 02:09:00] -rw-r--r-- 2 boinc boinc    569674 Oct 13 00:58 input.tar.gz
[2025-10-13 02:09:00] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:58 start_atlas.sh
[2025-10-13 02:09:00] -rw------- 1 boinc boinc 190311609 Oct 13 02:08 HITS.pool.root.1
[2025-10-13 02:09:00] -rw------- 1 boinc boinc    890880 Oct 13 02:09 result.tar.gz
02:09:02 (1156008): run_atlas exited; CPU time 15708.514693
02:09:02 (1156008): called boinc_finish(0)

</stderr_txt>
]]>

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