Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:32:39 (1923903): wrapper (7.7.26015): starting
00:32:39 (1923903): wrapper: running run_atlas (--nthreads 2)
[2025-10-13 00:32:39] Arguments: --nthreads 2
[2025-10-13 00:32:39] Threads: 2
[2025-10-13 00:32:39] Checking for CVMFS
[2025-10-13 00:32:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 00:32:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 00:32:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 00:32:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 00:32:39] 2.9.2.0 779100 4984 61560 151640 0 57 19602037 36864001 0 130560 0 3025839 99.989 173941 912 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 00:32:39] CVMFS is ok
[2025-10-13 00:32:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 00:32:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 00:32:39] Further information can be found at the LHC@home message board.
[2025-10-13 00:32:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 00:32:39] Checking for apptainer binary...
[2025-10-13 00:32:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 00:32:39] Running /usr/bin/apptainer --version
[2025-10-13 00:32:39] apptainer version 1.4.1-1.1
[2025-10-13 00:32:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 00:32:39] atlasA229
[2025-10-13 00:32:39] apptainer works
[2025-10-13 00:32:39] Set ATHENA_PROC_NUMBER=2
[2025-10-13 00:32:39] Set ATHENA_CORE_NUMBER=2
[2025-10-13 00:32:39] Starting ATLAS job with PandaID=6839821327
[2025-10-13 00:32:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:44:23]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:44:23] 2025-10-13 00:43:51,794 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:44:23] 2025-10-13 00:43:51,794 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:44:23] 2025-10-13 00:43:51,794 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:44:23] 2025-10-13 00:43:51,794 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:44:23] 2025-10-13 00:43:51,794 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:44:23] 2025-10-13 00:43:51,795 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:44:23] 2025-10-13 00:43:51,795 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:44:23] 2025-10-13 00:43:51,795 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:44:23] 2025-10-13 00:43:51,795 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:44:23] 2025-10-13 00:43:51,795 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:44:23] 2025-10-13 00:43:51,795 | INFO     | job 6839821327 has completed (purged errors)
[2025-10-13 02:44:23] 2025-10-13 00:43:51,795 | INFO     | overall cleanup function is called
[2025-10-13 02:44:23] 2025-10-13 00:43:52,801 | INFO     | --- collectZombieJob: --- 10, [1934019]
[2025-10-13 02:44:23] 2025-10-13 00:43:52,801 | INFO     | zombie collector waiting for pid 1934019
[2025-10-13 02:44:23] 2025-10-13 00:43:52,801 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:44:23] 2025-10-13 00:43:52,802 | INFO     | collected zombie processes
[2025-10-13 02:44:23] 2025-10-13 00:43:52,802 | INFO     | will attempt to kill all subprocesses of pid=1934019
[2025-10-13 02:44:23] 2025-10-13 00:43:52,835 | INFO     | process IDs to be killed: [1934019] (in reverse order)
[2025-10-13 02:44:23] 2025-10-13 00:43:52,858 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:44:23] 2025-10-13 00:43:52,859 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:44:23] 2025-10-13 00:43:52,859 | INFO     | did not find any defunct processes belonging to 1934019
[2025-10-13 02:44:23] 2025-10-13 00:43:52,860 | INFO     | did not find any defunct processes belonging to 1934019
[2025-10-13 02:44:23] 2025-10-13 00:43:52,860 | INFO     | ready for new job
[2025-10-13 02:44:23] 2025-10-13 00:43:52,860 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:44:23] 2025-10-13 00:43:52,861 | INFO     | ***************************************
[2025-10-13 02:44:23] 2025-10-13 00:43:52,861 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:44:23] 2025-10-13 00:43:52,861 | INFO     | ***************************************
[2025-10-13 02:44:23] 2025-10-13 00:43:52,861 | INFO     | 
[2025-10-13 02:44:23] 2025-10-13 00:43:52,861 | INFO     | architecture information:
[2025-10-13 02:44:23] 2025-10-13 00:43:52,861 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:44:23] 2025-10-13 00:43:52,869 | INFO     | cat /etc/os-release:
[2025-10-13 02:44:23] NAME="CentOS Linux"
[2025-10-13 02:44:23] VERSION="7 (Core)"
[2025-10-13 02:44:23] ID="centos"
[2025-10-13 02:44:23] ID_LIKE="rhel fedora"
[2025-10-13 02:44:23] VERSION_ID="7"
[2025-10-13 02:44:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:44:23] ANSI_COLOR="0;31"
[2025-10-13 02:44:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:44:23] HOME_URL="https://www.centos.org/"
[2025-10-13 02:44:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:44:23] 
[2025-10-13 02:44:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:44:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:44:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:44:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:44:23] 
[2025-10-13 02:44:23] 2025-10-13 00:43:52,870 | INFO     | ***************************************
[2025-10-13 02:44:23] 2025-10-13 00:43:53,373 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 02:44:23] 2025-10-13 00:43:53,385 | INFO     | sufficient remaining disk space (341109112832 B)
[2025-10-13 02:44:23] 2025-10-13 00:43:53,385 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:44:23] 2025-10-13 00:43:53,385 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:44:23] 2025-10-13 00:43:53,385 | INFO     | update_server=False
[2025-10-13 02:44:23] 2025-10-13 00:43:53,385 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:44:23] 2025-10-13 00:43:53,385 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:44:23] 2025-10-13 00:43:53,386 | INFO     | aborting loop
[2025-10-13 02:44:23] 2025-10-13 00:43:53,386 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:44:23] 2025-10-13 00:43:53,656 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:44:23] 2025-10-13 00:43:53,972 | INFO     | all job control threads have been joined
[2025-10-13 02:44:23] 2025-10-13 00:43:54,056 | INFO     | all payload control threads have been joined
[2025-10-13 02:44:23] 2025-10-13 00:43:54,241 | INFO     | all data control threads have been joined
[2025-10-13 02:44:23] 2025-10-13 00:43:54,391 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:54,392 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:54,393 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:54,442 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:54,503 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:44:23] 2025-10-13 00:43:54,547 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:54,978 | INFO     | [job] control thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:55,062 | INFO     | [payload] control thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:55,247 | INFO     | [data] control thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:55,292 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:55,370 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:55,607 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:55,663 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:55,891 | INFO     | [job] validate thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:55,892 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:43:58,511 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:44:03,653 | INFO     | job.realtimelogging is not enabled
[2025-10-13 02:44:23] 2025-10-13 00:44:04,309 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:44:23] 2025-10-13 00:44:04,659 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:44:23] 2025-10-13 00:44:05,492 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140573248612160)>', '<ExcThread(monitor, started 140572392154880)>']
[2025-10-13 02:44:23] 2025-10-13 00:44:10,516 | INFO     | all workflow threads have been joined
[2025-10-13 02:44:23] 2025-10-13 00:44:10,517 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:44:23] 2025-10-13 00:44:10,517 | INFO     | traces error code: 0
[2025-10-13 02:44:23] 2025-10-13 00:44:10,518 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:44:23] 2025-10-13 00:44:23,397 | INFO     | PID=1927609 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-13 02:44:23] 2025-10-13 00:44:23,397 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:44:23] 2025-10-13 00:44:23,397 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:44:23] 2025-10-13 00:44:23,397 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:44:23] 2025-10-13 00:44:23,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:44:23] 2025-10-13 00:44:23,397 | CRITICAL | thread 'MainThread' is not alive
[2025-10-13 02:44:23] 2025-10-13 00:44:23,397 | INFO     | [monitor] control thread has ended
[2025-10-13 02:44:23] 2025-10-13 00:44:23,437 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:44:23] 2025-10-13 00:44:23,440 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:44:23] 2025-10-13 00:44:23,442 [wrapper] pilotpid: 1927609
[2025-10-13 02:44:23] 2025-10-13 00:44:23,444 [wrapper] Pilot exit status: 0
[2025-10-13 02:44:23] 2025-10-13 00:44:23,451 [wrapper] pandaids: 6839821327
[2025-10-13 02:44:23] 2025-10-13 00:44:23,464 [wrapper] cleanup supervisor_pilot 1947837 1927610
[2025-10-13 02:44:23] 2025-10-13 00:44:23,466 [wrapper] Test setup, not cleaning
[2025-10-13 02:44:23] 2025-10-13 00:44:23,468 [wrapper] apfmon messages muted
[2025-10-13 02:44:23] 2025-10-13 00:44:23,470 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:44:23] 2025-10-13 00:44:23,473 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:44:23]  *** Error codes and diagnostics ***
[2025-10-13 02:44:23]     "exeErrorCode": 0,
[2025-10-13 02:44:23]     "exeErrorDiag": "",
[2025-10-13 02:44:23]     "pilotErrorCode": 0,
[2025-10-13 02:44:23]     "pilotErrorDiag": "",
[2025-10-13 02:44:23]  *** Listing of results directory ***
[2025-10-13 02:44:23] total 419896
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc    557409 Oct 12 11:04 pilot3.tar.gz
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc      5112 Oct 12 11:06 queuedata.json
[2025-10-13 02:44:23] -rwx------ 1 boinc boinc     36292 Oct 12 11:07 runpilot2-wrapper.sh
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc       100 Oct 13 00:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:44:23] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 00:32 run_atlas
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc       105 Oct 13 00:32 job.xml
[2025-10-13 02:44:23] -rw-r--r-- 2 boinc boinc 224124194 Oct 13 00:32 EVNT.46676267._003561.pool.root.1
[2025-10-13 02:44:23] drwxrwx--x 2 boinc boinc      4096 Oct 13 00:32 shared
[2025-10-13 02:44:23] -rw-r--r-- 2 boinc boinc    569681 Oct 13 00:32 input.tar.gz
[2025-10-13 02:44:23] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:32 start_atlas.sh
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:32 boinc_setup_complete
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc      6206 Oct 13 00:32 init_data.xml
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc         0 Oct 13 00:32 boinc_lockfile
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc      2550 Oct 13 00:32 pandaJob.out
[2025-10-13 02:44:23] -rw------- 1 boinc boinc    975603 Oct 13 00:32 agis_schedconf.cvmfs.json
[2025-10-13 02:44:23] -rw------- 1 boinc boinc   1560580 Oct 13 00:32 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:44:23] drwx------ 5 boinc boinc      4096 Oct 13 00:32 pilot3
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc       529 Oct 13 02:43 boinc_task_state.xml
[2025-10-13 02:44:23] -rw------- 1 boinc boinc 199154443 Oct 13 02:43 HITS.46676269._075015.pool.root.1
[2025-10-13 02:44:23] -rw------- 1 boinc boinc        95 Oct 13 02:43 pilot_heartbeat.json
[2025-10-13 02:44:23] -rw------- 1 boinc boinc      1017 Oct 13 02:43 memory_monitor_summary.json
[2025-10-13 02:44:23] -rw------- 1 boinc boinc    272253 Oct 13 02:43 log.46676269._075015.job.log.tgz.1
[2025-10-13 02:44:23] -rw------- 1 boinc boinc      7761 Oct 13 02:43 heartbeat.json
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc      8192 Oct 13 02:44 boinc_mmap_file
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc        27 Oct 13 02:44 wrapper_checkpoint.txt
[2025-10-13 02:44:23] -rw------- 1 boinc boinc       817 Oct 13 02:44 pilotlog.txt
[2025-10-13 02:44:23] -rw------- 1 boinc boinc   1129382 Oct 13 02:44 log.46676269._075015.job.log.1
[2025-10-13 02:44:23] -rw------- 1 boinc boinc       357 Oct 13 02:44 output.list
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc       620 Oct 13 02:44 runtime_log
[2025-10-13 02:44:23] -rw------- 1 boinc boinc   1423360 Oct 13 02:44 result.tar.gz
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc      8792 Oct 13 02:44 runtime_log.err
[2025-10-13 02:44:23] -rw------- 1 boinc boinc       662 Oct 13 02:44 6NjKDmPE7R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIIjNDmd3DNbn.diag
[2025-10-13 02:44:23] -rw-r--r-- 1 boinc boinc     12016 Oct 13 02:44 stderr.txt
[2025-10-13 02:44:23] HITS file was successfully produced:
[2025-10-13 02:44:23] -rw------- 1 boinc boinc 199154443 Oct 13 02:43 shared/HITS.pool.root.1
[2025-10-13 02:44:23]  *** Contents of shared directory: ***
[2025-10-13 02:44:23] total 415336
[2025-10-13 02:44:23] -rw-r--r-- 2 boinc boinc 224124194 Oct 13 00:32 ATLAS.root_0
[2025-10-13 02:44:23] -rw-r--r-- 2 boinc boinc    569681 Oct 13 00:32 input.tar.gz
[2025-10-13 02:44:23] -rw-r--r-- 2 boinc boinc     15120 Oct 13 00:32 start_atlas.sh
[2025-10-13 02:44:23] -rw------- 1 boinc boinc 199154443 Oct 13 02:43 HITS.pool.root.1
[2025-10-13 02:44:23] -rw------- 1 boinc boinc   1423360 Oct 13 02:44 result.tar.gz
02:44:45 (1923903): run_atlas exited; CPU time 15090.639217
02:44:45 (1923903): called boinc_finish(0)

</stderr_txt>
]]>

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