Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:32:38 (2221233): wrapper (7.7.26015): starting
16:32:38 (2221233): wrapper: running run_atlas (--nthreads 3)
[2025-10-12 16:32:38] Arguments: --nthreads 3
[2025-10-12 16:32:38] Threads: 3
[2025-10-12 16:32:38] Checking for CVMFS
[2025-10-12 16:32:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 16:32:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 16:32:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 16:32:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 16:32:39] 2.9.2.0 842304 4458 83124 151623 0 57 2602764 36864000 0 130560 0 3609727 99.991 150913 905 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-12 16:32:39] CVMFS is ok
[2025-10-12 16:32:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 16:32:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 16:32:39] Further information can be found at the LHC@home message board.
[2025-10-12 16:32:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 16:32:39] Checking for apptainer binary...
[2025-10-12 16:32:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 16:32:39] Running /usr/bin/apptainer --version
[2025-10-12 16:32:39] apptainer version 1.4.1-1.1
[2025-10-12 16:32:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 16:32:39] thA330a
[2025-10-12 16:32:39] apptainer works
[2025-10-12 16:32:39] Set ATHENA_PROC_NUMBER=3
[2025-10-12 16:32:39] Set ATHENA_CORE_NUMBER=3
[2025-10-12 16:32:39] Starting ATLAS job with PandaID=6839591191
[2025-10-12 16:32:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 17:53:55]  *** The last 200 lines of the pilot log: ***
[2025-10-12 17:53:55] 2025-10-12 15:53:09,716 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,716 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,716 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,717 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,717 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,717 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,717 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,717 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 17:53:55] 2025-10-12 15:53:09,717 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,717 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 17:53:55] 2025-10-12 15:53:09,717 | INFO     | job 6839591191 has completed (purged errors)
[2025-10-12 17:53:55] 2025-10-12 15:53:09,717 | INFO     | overall cleanup function is called
[2025-10-12 17:53:55] 2025-10-12 15:53:10,723 | INFO     | --- collectZombieJob: --- 10, [2231389]
[2025-10-12 17:53:55] 2025-10-12 15:53:10,723 | INFO     | zombie collector waiting for pid 2231389
[2025-10-12 17:53:55] 2025-10-12 15:53:10,724 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 17:53:55] 2025-10-12 15:53:10,724 | INFO     | collected zombie processes
[2025-10-12 17:53:55] 2025-10-12 15:53:10,724 | INFO     | will attempt to kill all subprocesses of pid=2231389
[2025-10-12 17:53:55] 2025-10-12 15:53:10,773 | INFO     | process IDs to be killed: [2231389] (in reverse order)
[2025-10-12 17:53:55] 2025-10-12 15:53:10,798 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 17:53:55] 2025-10-12 15:53:10,798 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 17:53:55] 2025-10-12 15:53:10,800 | INFO     | did not find any defunct processes belonging to 2231389
[2025-10-12 17:53:55] 2025-10-12 15:53:10,801 | INFO     | did not find any defunct processes belonging to 2231389
[2025-10-12 17:53:55] 2025-10-12 15:53:10,801 | INFO     | ready for new job
[2025-10-12 17:53:55] 2025-10-12 15:53:10,801 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 17:53:55] 2025-10-12 15:53:10,802 | INFO     | ***************************************
[2025-10-12 17:53:55] 2025-10-12 15:53:10,802 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 17:53:55] 2025-10-12 15:53:10,802 | INFO     | ***************************************
[2025-10-12 17:53:55] 2025-10-12 15:53:10,802 | INFO     | 
[2025-10-12 17:53:55] 2025-10-12 15:53:10,802 | INFO     | architecture information:
[2025-10-12 17:53:55] 2025-10-12 15:53:10,802 | INFO     | executing command: cat /etc/os-release
[2025-10-12 17:53:55] 2025-10-12 15:53:10,811 | INFO     | cat /etc/os-release:
[2025-10-12 17:53:55] NAME="CentOS Linux"
[2025-10-12 17:53:55] VERSION="7 (Core)"
[2025-10-12 17:53:55] ID="centos"
[2025-10-12 17:53:55] ID_LIKE="rhel fedora"
[2025-10-12 17:53:55] VERSION_ID="7"
[2025-10-12 17:53:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 17:53:55] ANSI_COLOR="0;31"
[2025-10-12 17:53:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 17:53:55] HOME_URL="https://www.centos.org/"
[2025-10-12 17:53:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 17:53:55] 
[2025-10-12 17:53:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 17:53:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 17:53:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 17:53:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 17:53:55] 
[2025-10-12 17:53:55] 2025-10-12 15:53:10,811 | INFO     | ***************************************
[2025-10-12 17:53:55] 2025-10-12 15:53:11,314 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-12 17:53:55] 2025-10-12 15:53:11,326 | INFO     | sufficient remaining disk space (259360030720 B)
[2025-10-12 17:53:55] 2025-10-12 15:53:11,326 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 17:53:55] 2025-10-12 15:53:11,326 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 17:53:55] 2025-10-12 15:53:11,326 | INFO     | update_server=False
[2025-10-12 17:53:55] 2025-10-12 15:53:11,326 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 17:53:55] 2025-10-12 15:53:11,327 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:53:55] 2025-10-12 15:53:11,327 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 17:53:55] 2025-10-12 15:53:11,442 | INFO     | all payload control threads have been joined
[2025-10-12 17:53:55] 2025-10-12 15:53:11,465 | INFO     | all data control threads have been joined
[2025-10-12 17:53:55] 2025-10-12 15:53:11,533 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 17:53:55] 2025-10-12 15:53:11,533 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 17:53:55] 2025-10-12 15:53:11,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 17:53:55] 2025-10-12 15:53:11,533 | INFO     | will abort loop
[2025-10-12 17:53:55] 2025-10-12 15:53:12,076 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 17:53:55] 2025-10-12 15:53:12,332 | INFO     | [job] queue monitor thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:12,332 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:12,333 | INFO     | [job] retrieve thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:12,351 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:12,448 | INFO     | [payload] control thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:12,471 | INFO     | [data] control thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:12,539 | INFO     | [job] job monitor thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:12,540 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:12,789 | INFO     | [payload] validate_post thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:12,814 | INFO     | all job control threads have been joined
[2025-10-12 17:53:55] 2025-10-12 15:53:13,254 | INFO     | [data] copytool_in thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:13,680 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:13,738 | INFO     | [job] validate thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:13,820 | INFO     | [job] control thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:13,860 | INFO     | [payload] failed_post thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:14,082 | INFO     | [data] copytool_out thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:15,334 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 17:53:55] 2025-10-12 15:53:40,293 | INFO     | 4826s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-12 17:53:55] 2025-10-12 15:53:41,359 | INFO     | PID=2224952 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 17:53:55] 2025-10-12 15:53:41,359 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 17:53:55] 2025-10-12 15:53:41,359 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 17:53:55] 2025-10-12 15:53:41,359 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 17:53:55] 2025-10-12 15:53:50,148 | INFO     | [monitor] cgroup control has ended
[2025-10-12 17:53:55] 2025-10-12 15:53:50,451 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140670633396032)>', '<ExcThread(monitor, started 140670144591616)>']
[2025-10-12 17:53:55] 2025-10-12 15:53:51,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 17:53:55] 2025-10-12 15:53:51,412 | INFO     | [monitor] control thread has ended
[2025-10-12 17:53:55] 2025-10-12 15:53:55,475 | INFO     | all workflow threads have been joined
[2025-10-12 17:53:55] 2025-10-12 15:53:55,476 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 17:53:55] 2025-10-12 15:53:55,477 | INFO     | traces error code: 0
[2025-10-12 17:53:55] 2025-10-12 15:53:55,477 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 17:53:55] 2025-10-12 15:53:55,527 [wrapper] ==== pilot stdout END ====
[2025-10-12 17:53:55] 2025-10-12 15:53:55,529 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 17:53:55] 2025-10-12 15:53:55,531 [wrapper] pilotpid: 2224952
[2025-10-12 17:53:55] 2025-10-12 15:53:55,534 [wrapper] Pilot exit status: 0
[2025-10-12 17:53:55] 2025-10-12 15:53:55,541 [wrapper] pandaids: 6839591191
[2025-10-12 17:53:55] 2025-10-12 15:53:55,558 [wrapper] cleanup supervisor_pilot 2243356 2224953
[2025-10-12 17:53:55] 2025-10-12 15:53:55,560 [wrapper] Test setup, not cleaning
[2025-10-12 17:53:55] 2025-10-12 15:53:55,562 [wrapper] apfmon messages muted
[2025-10-12 17:53:55] 2025-10-12 15:53:55,565 [wrapper] ==== wrapper stdout END ====
[2025-10-12 17:53:55] 2025-10-12 15:53:55,567 [wrapper] ==== wrapper stderr END ====
[2025-10-12 17:53:55]  *** Error codes and diagnostics ***
[2025-10-12 17:53:55]     "exeErrorCode": 0,
[2025-10-12 17:53:55]     "exeErrorDiag": "",
[2025-10-12 17:53:55]     "pilotErrorCode": 0,
[2025-10-12 17:53:55]     "pilotErrorDiag": "",
[2025-10-12 17:53:55]  *** Listing of results directory ***
[2025-10-12 17:53:55] total 410076
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc    557409 Oct 12 08:14 pilot3.tar.gz
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc      5112 Oct 12 08:28 queuedata.json
[2025-10-12 17:53:55] -rwx------ 1 boinc boinc     36292 Oct 12 08:31 runpilot2-wrapper.sh
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc       100 Oct 12 16:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 17:53:55] -rwxr-xr-x 1 boinc boinc      7986 Oct 12 16:32 run_atlas
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc       105 Oct 12 16:32 job.xml
[2025-10-12 17:53:55] -rw-r--r-- 2 boinc boinc 220188303 Oct 12 16:32 EVNT.46676267._004508.pool.root.1
[2025-10-12 17:53:55] -rw-r--r-- 2 boinc boinc    569680 Oct 12 16:32 input.tar.gz
[2025-10-12 17:53:55] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:32 start_atlas.sh
[2025-10-12 17:53:55] drwxrwx--x 2 boinc boinc      4096 Oct 12 16:32 shared
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:32 boinc_setup_complete
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc      6439 Oct 12 16:32 init_data.xml
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc         0 Oct 12 16:32 boinc_lockfile
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc      2550 Oct 12 16:32 pandaJob.out
[2025-10-12 17:53:55] -rw------- 1 boinc boinc    975528 Oct 12 16:32 agis_schedconf.cvmfs.json
[2025-10-12 17:53:55] -rw------- 1 boinc boinc   1560580 Oct 12 16:32 agis_ddmendpoints.agis.ALL.json
[2025-10-12 17:53:55] drwx------ 5 boinc boinc      4096 Oct 12 16:32 pilot3
[2025-10-12 17:53:55] -rw------- 1 boinc boinc 193924732 Oct 12 17:52 HITS.46676269._072623.pool.root.1
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc       529 Oct 12 17:52 boinc_task_state.xml
[2025-10-12 17:53:55] -rw------- 1 boinc boinc      1018 Oct 12 17:53 memory_monitor_summary.json
[2025-10-12 17:53:55] -rw------- 1 boinc boinc    243283 Oct 12 17:53 log.46676269._072623.job.log.tgz.1
[2025-10-12 17:53:55] -rw------- 1 boinc boinc        95 Oct 12 17:53 pilot_heartbeat.json
[2025-10-12 17:53:55] -rw------- 1 boinc boinc      7766 Oct 12 17:53 heartbeat.json
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc        27 Oct 12 17:53 wrapper_checkpoint.txt
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc      8192 Oct 12 17:53 boinc_mmap_file
[2025-10-12 17:53:55] -rw------- 1 boinc boinc      5053 Oct 12 17:53 pilotlog.txt
[2025-10-12 17:53:55] -rw------- 1 boinc boinc    711130 Oct 12 17:53 log.46676269._072623.job.log.1
[2025-10-12 17:53:55] -rw------- 1 boinc boinc       357 Oct 12 17:53 output.list
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc       620 Oct 12 17:53 runtime_log
[2025-10-12 17:53:55] -rw------- 1 boinc boinc    972800 Oct 12 17:53 result.tar.gz
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc      8782 Oct 12 17:53 runtime_log.err
[2025-10-12 17:53:55] -rw------- 1 boinc boinc       659 Oct 12 17:53 JvVMDmwm4R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmjriNDmUKSyNm.diag
[2025-10-12 17:53:55] -rw-r--r-- 1 boinc boinc     12817 Oct 12 17:53 stderr.txt
[2025-10-12 17:53:55] HITS file was successfully produced:
[2025-10-12 17:53:55] -rw------- 1 boinc boinc 193924732 Oct 12 17:52 shared/HITS.pool.root.1
[2025-10-12 17:53:55]  *** Contents of shared directory: ***
[2025-10-12 17:53:55] total 405944
[2025-10-12 17:53:55] -rw-r--r-- 2 boinc boinc 220188303 Oct 12 16:32 ATLAS.root_0
[2025-10-12 17:53:55] -rw-r--r-- 2 boinc boinc    569680 Oct 12 16:32 input.tar.gz
[2025-10-12 17:53:55] -rw-r--r-- 2 boinc boinc     15120 Oct 12 16:32 start_atlas.sh
[2025-10-12 17:53:55] -rw------- 1 boinc boinc 193924732 Oct 12 17:52 HITS.pool.root.1
[2025-10-12 17:53:55] -rw------- 1 boinc boinc    972800 Oct 12 17:53 result.tar.gz
17:53:57 (2221233): run_atlas exited; CPU time 13820.169907
17:53:57 (2221233): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN