Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:30:16 (3018006): wrapper (7.7.26015): starting
01:30:16 (3018006): wrapper: running run_atlas (--nthreads 3)
[2025-10-13 01:30:16] Arguments: --nthreads 3
[2025-10-13 01:30:16] Threads: 3
[2025-10-13 01:30:16] Checking for CVMFS
[2025-10-13 01:30:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 01:30:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 01:30:16] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 01:30:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 01:30:16] 2.9.2.0 1568863 4869 87004 151641 3 57 28552381 36864000 0 130560 0 3809002 99.991 171759 1003 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-13 01:30:16] CVMFS is ok
[2025-10-13 01:30:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 01:30:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 01:30:16] Further information can be found at the LHC@home message board.
[2025-10-13 01:30:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 01:30:16] Checking for apptainer binary...
[2025-10-13 01:30:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-13 01:30:16] Running /usr/bin/apptainer --version
[2025-10-13 01:30:16] apptainer version 1.4.1-1.1
[2025-10-13 01:30:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 01:30:16] madmaxA273
[2025-10-13 01:30:16] apptainer works
[2025-10-13 01:30:16] Set ATHENA_PROC_NUMBER=3
[2025-10-13 01:30:16] Set ATHENA_CORE_NUMBER=3
[2025-10-13 01:30:16] Starting ATLAS job with PandaID=6839821410
[2025-10-13 01:30:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 02:56:34]  *** The last 200 lines of the pilot log: ***
[2025-10-13 02:56:34] 2025-10-13 00:56:03,929 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,929 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,929 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,929 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,929 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,929 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,929 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,929 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | job 6839821410 has completed (purged errors)
[2025-10-13 02:56:34] 2025-10-13 00:56:03,930 | INFO     | overall cleanup function is called
[2025-10-13 02:56:34] 2025-10-13 00:56:04,937 | INFO     | --- collectZombieJob: --- 10, [3028153]
[2025-10-13 02:56:34] 2025-10-13 00:56:04,937 | INFO     | zombie collector waiting for pid 3028153
[2025-10-13 02:56:34] 2025-10-13 00:56:04,937 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 02:56:34] 2025-10-13 00:56:04,937 | INFO     | collected zombie processes
[2025-10-13 02:56:34] 2025-10-13 00:56:04,937 | INFO     | will attempt to kill all subprocesses of pid=3028153
[2025-10-13 02:56:34] 2025-10-13 00:56:04,980 | INFO     | process IDs to be killed: [3028153] (in reverse order)
[2025-10-13 02:56:34] 2025-10-13 00:56:05,003 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 02:56:34] 2025-10-13 00:56:05,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 02:56:34] 2025-10-13 00:56:05,005 | INFO     | did not find any defunct processes belonging to 3028153
[2025-10-13 02:56:34] 2025-10-13 00:56:05,006 | INFO     | did not find any defunct processes belonging to 3028153
[2025-10-13 02:56:34] 2025-10-13 00:56:05,006 | INFO     | ready for new job
[2025-10-13 02:56:34] 2025-10-13 00:56:05,006 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 02:56:34] 2025-10-13 00:56:05,006 | INFO     | ***************************************
[2025-10-13 02:56:34] 2025-10-13 00:56:05,006 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 02:56:34] 2025-10-13 00:56:05,007 | INFO     | ***************************************
[2025-10-13 02:56:34] 2025-10-13 00:56:05,007 | INFO     | 
[2025-10-13 02:56:34] 2025-10-13 00:56:05,007 | INFO     | architecture information:
[2025-10-13 02:56:34] 2025-10-13 00:56:05,007 | INFO     | executing command: cat /etc/os-release
[2025-10-13 02:56:34] 2025-10-13 00:56:05,015 | INFO     | cat /etc/os-release:
[2025-10-13 02:56:34] NAME="CentOS Linux"
[2025-10-13 02:56:34] VERSION="7 (Core)"
[2025-10-13 02:56:34] ID="centos"
[2025-10-13 02:56:34] ID_LIKE="rhel fedora"
[2025-10-13 02:56:34] VERSION_ID="7"
[2025-10-13 02:56:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 02:56:34] ANSI_COLOR="0;31"
[2025-10-13 02:56:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 02:56:34] HOME_URL="https://www.centos.org/"
[2025-10-13 02:56:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 02:56:34] 
[2025-10-13 02:56:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 02:56:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 02:56:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 02:56:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 02:56:34] 
[2025-10-13 02:56:34] 2025-10-13 00:56:05,015 | INFO     | ***************************************
[2025-10-13 02:56:34] 2025-10-13 00:56:05,518 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-13 02:56:34] 2025-10-13 00:56:05,529 | INFO     | sufficient remaining disk space (331288150016 B)
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | INFO     | update_server=False
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:56:34] 2025-10-13 00:56:05,530 | INFO     | aborting loop
[2025-10-13 02:56:34] 2025-10-13 00:56:05,531 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 02:56:34] 2025-10-13 00:56:05,531 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 02:56:34] 2025-10-13 00:56:05,645 | INFO     | all data control threads have been joined
[2025-10-13 02:56:34] 2025-10-13 00:56:05,714 | INFO     | all job control threads have been joined
[2025-10-13 02:56:34] 2025-10-13 00:56:06,248 | INFO     | all payload control threads have been joined
[2025-10-13 02:56:34] 2025-10-13 00:56:06,533 | INFO     | [job] queue monitor thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:06,535 | INFO     | [job] retrieve thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:06,536 | INFO     | [job] job monitor thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:06,567 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:06,619 | INFO     | [job] validate thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:06,650 | INFO     | [data] control thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:06,719 | INFO     | [job] control thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:06,742 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:07,080 | INFO     | [payload] failed_post thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:07,251 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:07,254 | INFO     | [payload] control thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:07,537 | INFO     | [data] copytool_out thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:07,629 | INFO     | [data] copytool_in thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:07,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 02:56:34] 2025-10-13 00:56:08,089 | INFO     | [payload] validate_post thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:11,931 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:16,197 | INFO     | job.realtimelogging is not enabled
[2025-10-13 02:56:34] 2025-10-13 00:56:17,203 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 02:56:34] 2025-10-13 00:56:28,172 | INFO     | [monitor] cgroup control has ended
[2025-10-13 02:56:34] 2025-10-13 00:56:28,909 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140560541230912)>', '<ExcThread(monitor, started 140559884728064)>']
[2025-10-13 02:56:34] 2025-10-13 00:56:29,655 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 02:56:34] 2025-10-13 00:56:29,655 | INFO     | [monitor] control thread has ended
[2025-10-13 02:56:34] 2025-10-13 00:56:33,935 | INFO     | all workflow threads have been joined
[2025-10-13 02:56:34] 2025-10-13 00:56:33,935 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 02:56:34] 2025-10-13 00:56:33,935 | INFO     | traces error code: 0
[2025-10-13 02:56:34] 2025-10-13 00:56:33,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 02:56:34] 2025-10-13 00:56:33,984 [wrapper] ==== pilot stdout END ====
[2025-10-13 02:56:34] 2025-10-13 00:56:33,987 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 02:56:34] 2025-10-13 00:56:33,989 [wrapper] pilotpid: 3021722
[2025-10-13 02:56:34] 2025-10-13 00:56:33,991 [wrapper] Pilot exit status: 0
[2025-10-13 02:56:34] 2025-10-13 00:56:33,998 [wrapper] pandaids: 6839821410
[2025-10-13 02:56:34] 2025-10-13 00:56:34,013 [wrapper] cleanup supervisor_pilot 3040030 3021723
[2025-10-13 02:56:34] 2025-10-13 00:56:34,016 [wrapper] Test setup, not cleaning
[2025-10-13 02:56:34] 2025-10-13 00:56:34,018 [wrapper] apfmon messages muted
[2025-10-13 02:56:34] 2025-10-13 00:56:34,020 [wrapper] ==== wrapper stdout END ====
[2025-10-13 02:56:34] 2025-10-13 00:56:34,023 [wrapper] ==== wrapper stderr END ====
[2025-10-13 02:56:34]  *** Error codes and diagnostics ***
[2025-10-13 02:56:34]     "exeErrorCode": 0,
[2025-10-13 02:56:34]     "exeErrorDiag": "",
[2025-10-13 02:56:34]     "pilotErrorCode": 0,
[2025-10-13 02:56:34]     "pilotErrorDiag": "",
[2025-10-13 02:56:34]  *** Listing of results directory ***
[2025-10-13 02:56:34] total 415432
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc    557409 Oct 12 11:04 pilot3.tar.gz
[2025-10-13 02:56:34] -rwx------ 1 boinc boinc     36292 Oct 12 11:11 runpilot2-wrapper.sh
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc      5112 Oct 12 11:11 queuedata.json
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc       100 Oct 13 01:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 02:56:34] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 01:30 run_atlas
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc       105 Oct 13 01:30 job.xml
[2025-10-13 02:56:34] -rw-r--r-- 2 boinc boinc 220903686 Oct 13 01:30 EVNT.46676267._003564.pool.root.1
[2025-10-13 02:56:34] -rw-r--r-- 2 boinc boinc    569679 Oct 13 01:30 input.tar.gz
[2025-10-13 02:56:34] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:30 start_atlas.sh
[2025-10-13 02:56:34] drwxrwx--x 2 boinc boinc      4096 Oct 13 01:30 shared
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:30 boinc_setup_complete
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc      6443 Oct 13 01:30 init_data.xml
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc         0 Oct 13 01:30 boinc_lockfile
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc      2550 Oct 13 01:30 pandaJob.out
[2025-10-13 02:56:34] -rw------- 1 boinc boinc    975603 Oct 13 01:30 agis_schedconf.cvmfs.json
[2025-10-13 02:56:34] -rw------- 1 boinc boinc   1560580 Oct 13 01:30 agis_ddmendpoints.agis.ALL.json
[2025-10-13 02:56:34] drwx------ 5 boinc boinc      4096 Oct 13 01:30 pilot3
[2025-10-13 02:56:34] -rw------- 1 boinc boinc 198586965 Oct 13 02:55 HITS.46676269._075098.pool.root.1
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc       529 Oct 13 02:55 boinc_task_state.xml
[2025-10-13 02:56:34] -rw------- 1 boinc boinc        95 Oct 13 02:55 pilot_heartbeat.json
[2025-10-13 02:56:34] -rw------- 1 boinc boinc      1036 Oct 13 02:55 memory_monitor_summary.json
[2025-10-13 02:56:34] -rw------- 1 boinc boinc    255666 Oct 13 02:55 log.46676269._075098.job.log.tgz.1
[2025-10-13 02:56:34] -rw------- 1 boinc boinc      7775 Oct 13 02:56 heartbeat.json
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc        27 Oct 13 02:56 wrapper_checkpoint.txt
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc      8192 Oct 13 02:56 boinc_mmap_file
[2025-10-13 02:56:34] -rw------- 1 boinc boinc      4628 Oct 13 02:56 pilotlog.txt
[2025-10-13 02:56:34] -rw------- 1 boinc boinc    751887 Oct 13 02:56 log.46676269._075098.job.log.1
[2025-10-13 02:56:34] -rw------- 1 boinc boinc       357 Oct 13 02:56 output.list
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc       620 Oct 13 02:56 runtime_log
[2025-10-13 02:56:34] -rw------- 1 boinc boinc   1024000 Oct 13 02:56 result.tar.gz
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc      8797 Oct 13 02:56 runtime_log.err
[2025-10-13 02:56:34] -rw------- 1 boinc boinc       662 Oct 13 02:56 DQTNDmJI7R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMJjNDmCvrjPm.diag
[2025-10-13 02:56:34] -rw-r--r-- 1 boinc boinc     12568 Oct 13 02:56 stderr.txt
[2025-10-13 02:56:34] HITS file was successfully produced:
[2025-10-13 02:56:34] -rw------- 1 boinc boinc 198586965 Oct 13 02:55 shared/HITS.pool.root.1
[2025-10-13 02:56:34]  *** Contents of shared directory: ***
[2025-10-13 02:56:34] total 411248
[2025-10-13 02:56:34] -rw-r--r-- 2 boinc boinc 220903686 Oct 13 01:30 ATLAS.root_0
[2025-10-13 02:56:34] -rw-r--r-- 2 boinc boinc    569679 Oct 13 01:30 input.tar.gz
[2025-10-13 02:56:34] -rw-r--r-- 2 boinc boinc     15120 Oct 13 01:30 start_atlas.sh
[2025-10-13 02:56:34] -rw------- 1 boinc boinc 198586965 Oct 13 02:55 HITS.pool.root.1
[2025-10-13 02:56:34] -rw------- 1 boinc boinc   1024000 Oct 13 02:56 result.tar.gz
02:56:35 (3018006): run_atlas exited; CPU time 14678.389650
02:56:35 (3018006): called boinc_finish(0)

</stderr_txt>
]]>

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