Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:13:39 (1293868): wrapper (7.7.26015): starting
11:13:39 (1293868): wrapper: running run_atlas (--nthreads 8)
[2025-10-12 11:13:39] Arguments: --nthreads 8
[2025-10-12 11:13:39] Threads: 8
[2025-10-12 11:13:39] Checking for CVMFS
[2025-10-12 11:13:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 11:13:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 11:13:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 11:13:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 11:13:40] 2.13.2.0 1615359 90848 450052 151623 2 332 21774985 40960000 16447 16776704 0 243687534 99.666 228102481 35385 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-12 11:13:40] CVMFS is ok
[2025-10-12 11:13:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 11:13:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 11:13:40] Further information can be found at the LHC@home message board.
[2025-10-12 11:13:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 11:13:40] Checking for apptainer binary...
[2025-10-12 11:13:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 11:13:40] Running /usr/bin/apptainer --version
[2025-10-12 11:13:40] apptainer version 1.4.3-1.el9
[2025-10-12 11:13:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 11:13:40] c-206-36.aglt2.org
[2025-10-12 11:13:40] apptainer works
[2025-10-12 11:13:40] Set ATHENA_PROC_NUMBER=8
[2025-10-12 11:13:40] Set ATHENA_CORE_NUMBER=8
[2025-10-12 11:13:40] Starting ATLAS job with PandaID=6839475123
[2025-10-12 11:13:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:50:08]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:50:09] 2025-10-12 16:48:49,605 | INFO     |  -- lfn=log.46676269._071857.job.log.tgz.1, status_code=0, status=transferred
[2025-10-12 12:50:09] 2025-10-12 16:48:49,606 | INFO     | stage-out finished correctly
[2025-10-12 12:50:09] 2025-10-12 16:48:50,956 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-12 12:50:09] 2025-10-12 16:48:51,590 | INFO     | time since job start (5698s) is within the limit (172800.0s)
[2025-10-12 12:50:09] 2025-10-12 16:48:51,650 | INFO     | job 6839475123 has state=finished
[2025-10-12 12:50:09] 2025-10-12 16:48:51,650 | INFO     | preparing for final server update for job 6839475123 in state='finished'
[2025-10-12 12:50:09] 2025-10-12 16:48:51,650 | INFO     | this job has now completed (state=finished)
[2025-10-12 12:50:09] 2025-10-12 16:48:51,650 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-12 12:50:09] 2025-10-12 16:48:51,651 | INFO     | log transfer has been attempted: DONE
[2025-10-12 12:50:09] 2025-10-12 16:48:51,652 | INFO     | job 6839475123 has finished - writing final server update
[2025-10-12 12:50:09] 2025-10-12 16:48:51,652 | INFO     | total number of processed events: 400 (read)
[2025-10-12 12:50:09] 2025-10-12 16:48:51,716 | INFO     | executing command: lscpu
[2025-10-12 12:50:09] 2025-10-12 16:48:51,780 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-12 12:50:09] 2025-10-12 16:48:53,621 | INFO     | time since job start (5700s) is within the limit (172800.0s)
[2025-10-12 12:50:09] 2025-10-12 16:48:53,823 | WARNING  | process 1304925 can no longer be monitored (due to stat problems) - aborting
[2025-10-12 12:50:09] 2025-10-12 16:48:53,823 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6839475123/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:50:09] 2025-10-12 16:48:53,824 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6839475123/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:50:09] 2025-10-12 16:48:53,824 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-12 12:50:09] 2025-10-12 16:48:53,824 | WARNING  | maxPSS not found in memory monitor output
[2025-10-12 12:50:09] 2025-10-12 16:48:53,825 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3179800 B
[2025-10-12 12:50:09] 2025-10-12 16:48:53,825 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15783 B
[2025-10-12 12:50:09] 2025-10-12 16:48:53,825 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 12:50:09] 2025-10-12 16:48:55,630 | INFO     | time since job start (5702s) is within the limit (172800.0s)
[2025-10-12 12:50:09] 2025-10-12 16:48:57,095 | INFO     | PID=1298484 has CPU usage=9.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:50:09] 2025-10-12 16:48:57,095 | INFO     | .. there are 18 such processes running
[2025-10-12 12:50:09] 2025-10-12 16:48:58,096 | INFO     | time since job start (5705s) is within the limit (172800.0s)
[2025-10-12 12:50:09] 2025-10-12 16:49:00,121 | INFO     | time since job start (5707s) is within the limit (172800.0s)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,348 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 12:50:09] 2025-10-12 16:49:01,352 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3204.873328125001
[2025-10-12 12:50:09] 2025-10-12 16:49:01,364 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6839475123/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,364 | INFO     | extracted standard info from prmon json
[2025-10-12 12:50:09] 2025-10-12 16:49:01,365 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 12:50:09] 2025-10-12 16:49:01,365 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 12:50:09] 2025-10-12 16:49:01,365 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:50:09] 2025-10-12 16:49:01,365 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:50:09] 2025-10-12 16:49:01,367 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:50:09] 2025-10-12 16:49:01,367 | INFO     | sum of square deviations: 197236710.8837212
[2025-10-12 12:50:09] 2025-10-12 16:49:01,367 | INFO     | sum of deviations: -1385440586.0232558
[2025-10-12 12:50:09] 2025-10-12 16:49:01,367 | INFO     | mean x: 1760284961.6744187
[2025-10-12 12:50:09] 2025-10-12 16:49:01,367 | INFO     | mean y: 2549732.534883721
[2025-10-12 12:50:09] 2025-10-12 16:49:01,434 | INFO     | -- intersect: 12367236904.325544
[2025-10-12 12:50:09] 2025-10-12 16:49:01,434 | INFO     | intersect: 12367236904.325544
[2025-10-12 12:50:09] 2025-10-12 16:49:01,435 | INFO     | chi2: 0.00451265352532855
[2025-10-12 12:50:09] 2025-10-12 16:49:01,435 | INFO     | -- intersect: 12367236904.325544
[2025-10-12 12:50:09] 2025-10-12 16:49:01,435 | INFO     | current memory leak: -7.02 B/s (using 86 data points, chi2=0.00)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,436 | INFO     | could have reported an average CPU frequency of 3197 MHz (7 samples)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,436 | INFO     | ..............................
[2025-10-12 12:50:09] 2025-10-12 16:49:01,436 | INFO     | . Timing measurements:
[2025-10-12 12:50:09] 2025-10-12 16:49:01,436 | INFO     | . get job = 0 s
[2025-10-12 12:50:09] 2025-10-12 16:49:01,436 | INFO     | . initial setup = 2 s
[2025-10-12 12:50:09] 2025-10-12 16:49:01,436 | INFO     | . payload setup = 7 s
[2025-10-12 12:50:09] 2025-10-12 16:49:01,436 | INFO     | . stage-in = 0 s
[2025-10-12 12:50:09] 2025-10-12 16:49:01,437 | INFO     | . payload execution = 5666 s
[2025-10-12 12:50:09] 2025-10-12 16:49:01,437 | INFO     | . stage-out = 0 s
[2025-10-12 12:50:09] 2025-10-12 16:49:01,437 | INFO     | . log creation = 0 s
[2025-10-12 12:50:09] 2025-10-12 16:49:01,437 | INFO     | ..............................
[2025-10-12 12:50:09] 2025-10-12 16:49:01,459 | INFO     | sufficient remaining disk space (84674609152 B)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,460 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,461 | INFO     | size of work directory /tmp/boinchome/slots/3/PanDA_Pilot-6839475123: 3485816 B (within 2537553920 B limit)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,461 | INFO     | pfn file=/tmp/boinchome/slots/3/PanDA_Pilot-6839475123/HITS.46676269._071857.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,461 | INFO     | total size of present files: 0 B (workdir size: 3485816 B)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,461 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/3/PanDA_Pilot-6839475123/HITS.46676269._071857.pool.root.1 since it does not exist
[2025-10-12 12:50:09] 2025-10-12 16:49:01,662 | INFO     | 
[2025-10-12 12:50:09] 2025-10-12 16:49:01,662 | INFO     | job summary report
[2025-10-12 12:50:09] 2025-10-12 16:49:01,662 | INFO     | --------------------------------------------------
[2025-10-12 12:50:09] 2025-10-12 16:49:01,662 | INFO     | PanDA job id: 6839475123
[2025-10-12 12:50:09] 2025-10-12 16:49:01,662 | INFO     | task id: 46676269
[2025-10-12 12:50:09] 2025-10-12 16:49:01,662 | INFO     | errors: (none)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | pilot state: finished 
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | transexitcode: 0
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | exeerrorcode: 0
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | exeerrordiag: 
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | exitcode: 0
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | exitmsg: OK
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | cpuconsumptiontime: 32858 s
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | nevents: 400
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | neventsw: 0
[2025-10-12 12:50:09] 2025-10-12 16:49:01,663 | INFO     | pid: 1304925
[2025-10-12 12:50:09] 2025-10-12 16:49:01,664 | INFO     | pgrp: 1304925
[2025-10-12 12:50:09] 2025-10-12 16:49:01,664 | INFO     | corecount: 8
[2025-10-12 12:50:09] 2025-10-12 16:49:01,664 | INFO     | event service: False
[2025-10-12 12:50:09] 2025-10-12 16:49:01,664 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 5677: 2375995, 5678: 2375994, 5680: 2385176, 5681: 2385232, 5692: 2385454}
[2025-10-12 12:50:09] 2025-10-12 16:49:01,664 | INFO     | --------------------------------------------------
[2025-10-12 12:50:09] 2025-10-12 16:49:01,664 | INFO     | 
[2025-10-12 12:50:09] 2025-10-12 16:49:01,664 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-12 12:50:09] 2025-10-12 16:49:01,702 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,703 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,704 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,704 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,704 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,704 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,704 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:50:09] 2025-10-12 16:49:01,704 | INFO     | job 6839475123 has completed (purged errors)
[2025-10-12 12:50:09] 2025-10-12 16:49:01,704 | INFO     | overall cleanup function is called
[2025-10-12 12:50:09] 2025-10-12 16:49:01,961 | INFO     | number of running child processes to parent process 1304925: 1
[2025-10-12 12:50:09] 2025-10-12 16:49:01,961 | INFO     | maximum number of monitored processes: 6
[2025-10-12 12:50:09] 2025-10-12 16:49:01,961 | INFO     | aborting job monitoring since job object (job id=6839475123) has expired
[2025-10-12 12:50:09] 2025-10-12 16:49:02,714 | INFO     | --- collectZombieJob: --- 10, [1304925]
[2025-10-12 12:50:09] 2025-10-12 16:49:02,714 | INFO     | zombie collector waiting for pid 1304925
[2025-10-12 12:50:09] 2025-10-12 16:49:02,714 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:50:09] 2025-10-12 16:49:02,714 | INFO     | collected zombie processes
[2025-10-12 12:50:09] 2025-10-12 16:49:02,714 | INFO     | will attempt to kill all subprocesses of pid=1304925
[2025-10-12 12:50:09] 2025-10-12 16:49:03,163 | INFO     | process IDs to be killed: [1304925] (in reverse order)
[2025-10-12 12:50:09] 2025-10-12 16:49:03,285 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:50:09] 2025-10-12 16:49:03,286 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:50:09] 2025-10-12 16:49:03,299 | INFO     | did not find any defunct processes belonging to 1304925
[2025-10-12 12:50:09] 2025-10-12 16:49:03,313 | INFO     | did not find any defunct processes belonging to 1304925
[2025-10-12 12:50:09] 2025-10-12 16:49:03,313 | INFO     | ready for new job
[2025-10-12 12:50:09] 2025-10-12 16:49:03,313 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:50:09] 2025-10-12 16:49:03,319 | INFO     | ***************************************
[2025-10-12 12:50:09] 2025-10-12 16:49:03,319 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:50:09] 2025-10-12 16:49:03,319 | INFO     | ***************************************
[2025-10-12 12:50:09] 2025-10-12 16:49:03,319 | INFO     | 
[2025-10-12 12:50:09] 2025-10-12 16:49:03,322 | INFO     | architecture information:
[2025-10-12 12:50:09] 2025-10-12 16:49:03,327 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:50:09] 2025-10-12 16:49:03,363 | INFO     | cat /etc/os-release:
[2025-10-12 12:50:09] NAME="CentOS Linux"
[2025-10-12 12:50:09] VERSION="7 (Core)"
[2025-10-12 12:50:09] ID="centos"
[2025-10-12 12:50:09] ID_LIKE="rhel fedora"
[2025-10-12 12:50:09] VERSION_ID="7"
[2025-10-12 12:50:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:50:09] ANSI_COLOR="0;31"
[2025-10-12 12:50:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:50:09] HOME_URL="https://www.centos.org/"
[2025-10-12 12:50:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:50:09] 
[2025-10-12 12:50:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:50:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:50:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:50:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:50:09] 
[2025-10-12 12:50:09] 2025-10-12 16:49:03,364 | INFO     | ***************************************
[2025-10-12 12:50:09] 2025-10-12 16:49:03,867 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-12 12:50:09] 2025-10-12 16:49:03,897 | INFO     | sufficient remaining disk space (84678803456 B)
[2025-10-12 12:50:09] 2025-10-12 16:49:03,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:50:09] 2025-10-12 16:49:03,897 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:50:09] 2025-10-12 16:49:03,897 | INFO     | update_server=False
[2025-10-12 12:50:09] 2025-10-12 16:49:03,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:50:09] 2025-10-12 16:49:03,898 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:50:09] 2025-10-12 16:49:03,898 | INFO     | aborting loop
[2025-10-12 12:50:09] 2025-10-12 16:49:04,253 | INFO     | all data control threads have been joined
[2025-10-12 12:50:09] 2025-10-12 16:49:04,708 | INFO     | all job control threads have been joined
[2025-10-12 12:50:09] 2025-10-12 16:49:04,903 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:04,904 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:05,150 | INFO     | all payload control threads have been joined
[2025-10-12 12:50:09] 2025-10-12 16:49:05,153 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:05,259 | INFO     | [data] control thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:05,262 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:05,266 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:50:09] 2025-10-12 16:49:05,357 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:05,713 | INFO     | [job] control thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:05,896 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:05,974 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:06,056 | INFO     | [job] validate thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:06,068 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:50:09] 2025-10-12 16:49:06,137 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:06,161 | INFO     | [payload] control thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:06,286 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:06,688 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:50:09] 2025-10-12 16:49:07,273 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:07,697 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:10,076 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:50:09] 2025-10-12 16:49:33,568 | INFO     | PID=1298484 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:50:09] 2025-10-12 16:49:33,569 | INFO     | .. there are 18 such processes running
[2025-10-12 12:50:09] 2025-10-12 16:49:33,570 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:50:09] 2025-10-12 16:49:33,570 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:50:09] 2025-10-12 16:49:33,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:50:09] 2025-10-12 16:50:02,733 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:50:09] 2025-10-12 16:50:03,037 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139698264676160)>', '<ExcThread(monitor, started 139697982506752)>']
[2025-10-12 12:50:09] 2025-10-12 16:50:03,755 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:50:09] 2025-10-12 16:50:03,755 | INFO     | [monitor] control thread has ended
[2025-10-12 12:50:09] 2025-10-12 16:50:08,068 | INFO     | all workflow threads have been joined
[2025-10-12 12:50:09] 2025-10-12 16:50:08,068 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:50:09] 2025-10-12 16:50:08,068 | INFO     | traces error code: 0
[2025-10-12 12:50:09] 2025-10-12 16:50:08,068 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:50:09] 2025-10-12 16:50:08,332 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:50:09] 2025-10-12 16:50:08,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:50:09] 2025-10-12 16:50:08,353 [wrapper] pilotpid: 1298484
[2025-10-12 12:50:09] 2025-10-12 16:50:08,399 [wrapper] Pilot exit status: 0
[2025-10-12 12:50:09] 2025-10-12 16:50:08,454 [wrapper] pandaids: 6839475123
[2025-10-12 12:50:09] 2025-10-12 16:50:08,621 [wrapper] cleanup supervisor_pilot 1538867 1298485
[2025-10-12 12:50:09] 2025-10-12 16:50:08,632 [wrapper] Test setup, not cleaning
[2025-10-12 12:50:09] 2025-10-12 16:50:08,646 [wrapper] apfmon messages muted
[2025-10-12 12:50:09] 2025-10-12 16:50:08,661 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:50:09] 2025-10-12 16:50:08,667 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:50:09]  *** Error codes and diagnostics ***
[2025-10-12 12:50:09]     "exeErrorCode": 0,
[2025-10-12 12:50:09]     "exeErrorDiag": "",
[2025-10-12 12:50:09]     "pilotErrorCode": 0,
[2025-10-12 12:50:09]     "pilotErrorDiag": "",
[2025-10-12 12:50:09]  *** Listing of results directory ***
[2025-10-12 12:50:09] total 406100
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 01:26 queuedata.json
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 01:26 pilot3.tar.gz
[2025-10-12 12:50:09] -rwx------. 1 boincer umatlas     36292 Oct 12 01:26 runpilot2-wrapper.sh
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas       100 Oct 12 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:50:09] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 11:13 run_atlas
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas       105 Oct 12 11:13 job.xml
[2025-10-12 12:50:09] -rw-r--r--. 2 boincer umatlas 219913833 Oct 12 11:13 EVNT.46676267._004319.pool.root.1
[2025-10-12 12:50:09] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 11:13 input.tar.gz
[2025-10-12 12:50:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:13 start_atlas.sh
[2025-10-12 12:50:09] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 11:13 shared
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas         0 Oct 12 11:13 boinc_lockfile
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 11:13 pandaJob.out
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas    975528 Oct 12 11:13 agis_schedconf.cvmfs.json
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas   1560580 Oct 12 11:13 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:50:09] drwx------. 5 boincer umatlas      4096 Oct 12 11:13 pilot3
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas      6899 Oct 12 12:45 init_data.xml
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas 189721479 Oct 12 12:48 HITS.46676269._071857.pool.root.1
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas       529 Oct 12 12:48 boinc_task_state.xml
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas      1035 Oct 12 12:48 memory_monitor_summary.json
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas    339454 Oct 12 12:48 log.46676269._071857.job.log.tgz.1
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas      7776 Oct 12 12:49 heartbeat.json
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas        95 Oct 12 12:49 pilot_heartbeat.json
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 12:50 boinc_mmap_file
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas      4824 Oct 12 12:50 pilotlog.txt
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas        27 Oct 12 12:50 wrapper_checkpoint.txt
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas    814509 Oct 12 12:50 log.46676269._071857.job.log.1
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas       357 Oct 12 12:50 output.list
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas       620 Oct 12 12:50 runtime_log
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas   1177600 Oct 12 12:50 result.tar.gz
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas      8703 Oct 12 12:50 runtime_log.err
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas       652 Oct 12 12:50 H0QLDm1l3R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbjiNDmVbJ3En.diag
[2025-10-12 12:50:09] -rw-r--r--. 1 boincer umatlas     22530 Oct 12 12:50 stderr.txt
[2025-10-12 12:50:09] HITS file was successfully produced:
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas 189721479 Oct 12 12:48 shared/HITS.pool.root.1
[2025-10-12 12:50:09]  *** Contents of shared directory: ***
[2025-10-12 12:50:09] total 401768
[2025-10-12 12:50:09] -rw-r--r--. 2 boincer umatlas 219913833 Oct 12 11:13 ATLAS.root_0
[2025-10-12 12:50:09] -rw-r--r--. 2 boincer umatlas    569677 Oct 12 11:13 input.tar.gz
[2025-10-12 12:50:09] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 11:13 start_atlas.sh
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas 189721479 Oct 12 12:48 HITS.pool.root.1
[2025-10-12 12:50:09] -rw-------. 1 boincer umatlas   1177600 Oct 12 12:50 result.tar.gz
12:50:10 (1293868): run_atlas exited; CPU time 32854.589921
12:50:10 (1293868): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN