Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:10:12 (3591682): wrapper (7.7.26015): starting
09:10:12 (3591682): wrapper: running run_atlas (--nthreads 9)
[2025-10-12 09:10:12] Arguments: --nthreads 9
[2025-10-12 09:10:12] Threads: 9
[2025-10-12 09:10:12] Checking for CVMFS
[2025-10-12 09:10:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-12 09:10:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-12 09:10:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-12 09:10:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-12 09:10:13] 2.13.2.0 3029961 129282 534616 151620 0 637 26435555 40960000 29132 16776704 20 266441783 99.686 220991473 21357 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-12 09:10:13] CVMFS is ok
[2025-10-12 09:10:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-12 09:10:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-12 09:10:13] Further information can be found at the LHC@home message board.
[2025-10-12 09:10:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-12 09:10:13] Checking for apptainer binary...
[2025-10-12 09:10:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-12 09:10:13] Running /usr/bin/apptainer --version
[2025-10-12 09:10:13] apptainer version 1.4.3-1.el9
[2025-10-12 09:10:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-12 09:10:13] c7-11-14.aglt2.org
[2025-10-12 09:10:13] apptainer works
[2025-10-12 09:10:13] Set ATHENA_PROC_NUMBER=9
[2025-10-12 09:10:13] Set ATHENA_CORE_NUMBER=9
[2025-10-12 09:10:14] Starting ATLAS job with PandaID=6839774969
[2025-10-12 09:10:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 12:48:14]  *** The last 200 lines of the pilot log: ***
[2025-10-12 12:48:14] 2025-10-12 16:47:33,931 | INFO     | time since job start (13021s) is within the limit (172800.0s)
[2025-10-12 12:48:14] 2025-10-12 16:47:34,428 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-12 12:48:14] 2025-10-12 16:47:34,441 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3268.0555781249996
[2025-10-12 12:48:14] 2025-10-12 16:47:34,463 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6839774969/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 12:48:14] 2025-10-12 16:47:34,464 | INFO     | extracted standard info from prmon json
[2025-10-12 12:48:14] 2025-10-12 16:47:34,464 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 12:48:14] 2025-10-12 16:47:34,464 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 12:48:14] 2025-10-12 16:47:34,468 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 12:48:14] 2025-10-12 16:47:34,468 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 12:48:14] 2025-10-12 16:47:34,471 | INFO     | fitting pss+swap vs Time
[2025-10-12 12:48:14] 2025-10-12 16:47:34,476 | INFO     | sum of square deviations: 2996885934.2910776
[2025-10-12 12:48:14] 2025-10-12 16:47:34,477 | INFO     | sum of deviations: 30951475241.267582
[2025-10-12 12:48:14] 2025-10-12 16:47:34,477 | INFO     | mean x: 1760281141.319249
[2025-10-12 12:48:14] 2025-10-12 16:47:34,478 | INFO     | mean y: 2152552.4225352113
[2025-10-12 12:48:14] 2025-10-12 16:47:34,482 | INFO     | -- intersect: -18177818042.988586
[2025-10-12 12:48:14] 2025-10-12 16:47:34,482 | INFO     | intersect: -18177818042.988586
[2025-10-12 12:48:14] 2025-10-12 16:47:34,482 | INFO     | chi2: 3.2213104079988835
[2025-10-12 12:48:14] 2025-10-12 16:47:34,483 | INFO     | sum of square deviations: 2790723485.519224
[2025-10-12 12:48:14] 2025-10-12 16:47:34,484 | INFO     | sum of deviations: 42726481042.06732
[2025-10-12 12:48:14] 2025-10-12 16:47:34,484 | INFO     | mean x: 1760280988.7980769
[2025-10-12 12:48:14] 2025-10-12 16:47:34,484 | INFO     | mean y: 2161094.168269231
[2025-10-12 12:48:14] 2025-10-12 16:47:34,484 | INFO     | -- intersect: -26948059050.125008
[2025-10-12 12:48:14] 2025-10-12 16:47:34,484 | INFO     | intersect: -26948059050.125008
[2025-10-12 12:48:14] 2025-10-12 16:47:34,484 | INFO     | chi2: 2.5253095324934054
[2025-10-12 12:48:14] 2025-10-12 16:47:34,484 | INFO     | current chi2=2.5253095324934054 (change=21.606141208162615 %)
[2025-10-12 12:48:14] 2025-10-12 16:47:34,484 | INFO     | right removable region: 207
[2025-10-12 12:48:14] 2025-10-12 16:47:34,485 | INFO     | sum of square deviations: 2790759003.769231
[2025-10-12 12:48:14] 2025-10-12 16:47:34,490 | INFO     | sum of deviations: -11704777534.53847
[2025-10-12 12:48:14] 2025-10-12 16:47:34,490 | INFO     | mean x: 1760281293.8269231
[2025-10-12 12:48:14] 2025-10-12 16:47:34,490 | INFO     | mean y: 2183975.846153846
[2025-10-12 12:48:14] 2025-10-12 16:47:34,490 | INFO     | -- intersect: 7385014565.884953
[2025-10-12 12:48:14] 2025-10-12 16:47:34,490 | INFO     | intersect: 7385014565.884953
[2025-10-12 12:48:14] 2025-10-12 16:47:34,490 | INFO     | chi2: 1.0264677316357966
[2025-10-12 12:48:14] 2025-10-12 16:47:34,490 | INFO     | current chi2=1.0264677316357966 (change=68.13508784850539 %)
[2025-10-12 12:48:14] 2025-10-12 16:47:34,491 | INFO     | sum of square deviations: 2594306673.2216773
[2025-10-12 12:48:14] 2025-10-12 16:47:34,492 | INFO     | sum of deviations: -21462306113.458115
[2025-10-12 12:48:14] 2025-10-12 16:47:34,492 | INFO     | mean x: 1760281446.3349755
[2025-10-12 12:48:14] 2025-10-12 16:47:34,492 | INFO     | mean y: 2191473.3743842365
[2025-10-12 12:48:14] 2025-10-12 16:47:34,492 | INFO     | -- intersect: 14564733225.682419
[2025-10-12 12:48:14] 2025-10-12 16:47:34,492 | INFO     | intersect: 14564733225.682419
[2025-10-12 12:48:14] 2025-10-12 16:47:34,492 | INFO     | chi2: 0.8415851254738225
[2025-10-12 12:48:14] 2025-10-12 16:47:34,492 | INFO     | current chi2=0.8415851254738225 (change=18.011536112035596 %)
[2025-10-12 12:48:14] 2025-10-12 16:47:34,492 | INFO     | left removable region: 20
[2025-10-12 12:48:14] 2025-10-12 16:47:34,493 | INFO     | sum of square deviations: 2027908960.3850303
[2025-10-12 12:48:14] 2025-10-12 16:47:34,497 | INFO     | sum of deviations: -6290745572.465244
[2025-10-12 12:48:14] 2025-10-12 16:47:34,497 | INFO     | mean x: 1760281568.3155081
[2025-10-12 12:48:14] 2025-10-12 16:47:34,497 | INFO     | mean y: 2198627.1604278074
[2025-10-12 12:48:14] 2025-10-12 16:47:34,497 | INFO     | -- intersect: 5462741333.214888
[2025-10-12 12:48:14] 2025-10-12 16:47:34,497 | INFO     | intersect: 5462741333.214888
[2025-10-12 12:48:14] 2025-10-12 16:47:34,497 | INFO     | chi2: 0.11253604671446991
[2025-10-12 12:48:14] 2025-10-12 16:47:34,498 | INFO     | -- intersect: 5462741333.214888
[2025-10-12 12:48:14] 2025-10-12 16:47:34,498 | INFO     | current memory leak: -3.10 B/s (using 187 data points, chi2=0.11)
[2025-10-12 12:48:14] 2025-10-12 16:47:34,498 | INFO     | could have reported an average CPU frequency of 3288 MHz (11 samples)
[2025-10-12 12:48:14] 2025-10-12 16:47:34,498 | INFO     | ..............................
[2025-10-12 12:48:14] 2025-10-12 16:47:34,498 | INFO     | . Timing measurements:
[2025-10-12 12:48:14] 2025-10-12 16:47:34,498 | INFO     | . get job = 0 s
[2025-10-12 12:48:14] 2025-10-12 16:47:34,498 | INFO     | . initial setup = 2 s
[2025-10-12 12:48:14] 2025-10-12 16:47:34,499 | INFO     | . payload setup = 12 s
[2025-10-12 12:48:14] 2025-10-12 16:47:34,499 | INFO     | . stage-in = 0 s
[2025-10-12 12:48:14] 2025-10-12 16:47:34,499 | INFO     | . payload execution = 12950 s
[2025-10-12 12:48:14] 2025-10-12 16:47:34,499 | INFO     | . stage-out = 8 s
[2025-10-12 12:48:14] 2025-10-12 16:47:34,499 | INFO     | . log creation = 0 s
[2025-10-12 12:48:14] 2025-10-12 16:47:34,499 | INFO     | ..............................
[2025-10-12 12:48:14] 2025-10-12 16:47:34,892 | INFO     | 
[2025-10-12 12:48:14] 2025-10-12 16:47:34,892 | INFO     | job summary report
[2025-10-12 12:48:14] 2025-10-12 16:47:34,892 | INFO     | --------------------------------------------------
[2025-10-12 12:48:14] 2025-10-12 16:47:34,892 | INFO     | PanDA job id: 6839774969
[2025-10-12 12:48:14] 2025-10-12 16:47:34,892 | INFO     | task id: 46676269
[2025-10-12 12:48:14] 2025-10-12 16:47:34,892 | INFO     | errors: (none)
[2025-10-12 12:48:14] 2025-10-12 16:47:34,892 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 12:48:14] 2025-10-12 16:47:34,892 | INFO     | pilot state: finished 
[2025-10-12 12:48:14] 2025-10-12 16:47:34,892 | INFO     | transexitcode: 0
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | exeerrorcode: 0
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | exeerrordiag: 
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | exitcode: 0
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | exitmsg: OK
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | cpuconsumptiontime: 31342 s
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | nevents: 400
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | neventsw: 0
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | pid: 3603437
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | pgrp: 3603437
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | corecount: 9
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | event service: False
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | sizes: {0: 2348857, 10: 2349119, 11: 2349147, 12967: 2379219, 12968: 2379218, 12978: 2388272, 12979: 2388456, 13002: 2388650}
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | --------------------------------------------------
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | 
[2025-10-12 12:48:14] 2025-10-12 16:47:34,893 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-12 12:48:14] 2025-10-12 16:47:35,258 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,258 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,258 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,258 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 12:48:14] 2025-10-12 16:47:35,259 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,260 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 12:48:14] 2025-10-12 16:47:35,260 | INFO     | job 6839774969 has completed (purged errors)
[2025-10-12 12:48:14] 2025-10-12 16:47:35,260 | INFO     | overall cleanup function is called
[2025-10-12 12:48:14] 2025-10-12 16:47:36,371 | INFO     | --- collectZombieJob: --- 10, [3603437]
[2025-10-12 12:48:14] 2025-10-12 16:47:36,371 | INFO     | zombie collector waiting for pid 3603437
[2025-10-12 12:48:14] 2025-10-12 16:47:36,371 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 12:48:14] 2025-10-12 16:47:36,371 | INFO     | collected zombie processes
[2025-10-12 12:48:14] 2025-10-12 16:47:36,371 | INFO     | will attempt to kill all subprocesses of pid=3603437
[2025-10-12 12:48:14] 2025-10-12 16:47:38,786 | INFO     | PID=3596484 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:48:14] 2025-10-12 16:47:38,786 | INFO     | .. there are 39 such processes running
[2025-10-12 12:48:14] 2025-10-12 16:47:39,295 | INFO     | process IDs to be killed: [3603437] (in reverse order)
[2025-10-12 12:48:14] 2025-10-12 16:47:39,589 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 12:48:14] 2025-10-12 16:47:39,592 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 12:48:14] 2025-10-12 16:47:39,700 | INFO     | did not find any defunct processes belonging to 3603437
[2025-10-12 12:48:14] 2025-10-12 16:47:39,770 | INFO     | did not find any defunct processes belonging to 3603437
[2025-10-12 12:48:14] 2025-10-12 16:47:39,771 | INFO     | ready for new job
[2025-10-12 12:48:14] 2025-10-12 16:47:39,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 12:48:14] 2025-10-12 16:47:39,773 | INFO     | ***************************************
[2025-10-12 12:48:14] 2025-10-12 16:47:39,775 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 12:48:14] 2025-10-12 16:47:39,775 | INFO     | ***************************************
[2025-10-12 12:48:14] 2025-10-12 16:47:39,775 | INFO     | 
[2025-10-12 12:48:14] 2025-10-12 16:47:39,792 | INFO     | architecture information:
[2025-10-12 12:48:14] 2025-10-12 16:47:39,818 | INFO     | executing command: cat /etc/os-release
[2025-10-12 12:48:14] 2025-10-12 16:47:39,986 | INFO     | cat /etc/os-release:
[2025-10-12 12:48:14] NAME="CentOS Linux"
[2025-10-12 12:48:14] VERSION="7 (Core)"
[2025-10-12 12:48:14] ID="centos"
[2025-10-12 12:48:14] ID_LIKE="rhel fedora"
[2025-10-12 12:48:14] VERSION_ID="7"
[2025-10-12 12:48:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 12:48:14] ANSI_COLOR="0;31"
[2025-10-12 12:48:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 12:48:14] HOME_URL="https://www.centos.org/"
[2025-10-12 12:48:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 12:48:14] 
[2025-10-12 12:48:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 12:48:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 12:48:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 12:48:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 12:48:14] 
[2025-10-12 12:48:14] 2025-10-12 16:47:39,986 | INFO     | ***************************************
[2025-10-12 12:48:14] 2025-10-12 16:47:40,490 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-12 12:48:14] 2025-10-12 16:47:40,576 | INFO     | sufficient remaining disk space (85146468352 B)
[2025-10-12 12:48:14] 2025-10-12 16:47:40,576 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 12:48:14] 2025-10-12 16:47:40,576 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 12:48:14] 2025-10-12 16:47:40,577 | INFO     | update_server=False
[2025-10-12 12:48:14] 2025-10-12 16:47:40,577 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 12:48:14] 2025-10-12 16:47:40,578 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:48:14] 2025-10-12 16:47:40,725 | INFO     | all data control threads have been joined
[2025-10-12 12:48:14] 2025-10-12 16:47:40,941 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 12:48:14] 2025-10-12 16:47:41,128 | INFO     | all payload control threads have been joined
[2025-10-12 12:48:14] 2025-10-12 16:47:41,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 12:48:14] 2025-10-12 16:47:41,255 | INFO     | aborting loop
[2025-10-12 12:48:14] 2025-10-12 16:47:41,471 | INFO     | all job control threads have been joined
[2025-10-12 12:48:14] 2025-10-12 16:47:41,583 | INFO     | [job] retrieve thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:41,584 | INFO     | [job] queue monitor thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:41,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 12:48:14] 2025-10-12 16:47:41,626 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:41,731 | INFO     | [data] control thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:42,028 | INFO     | [payload] validate_post thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:42,134 | INFO     | [payload] control thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:42,256 | INFO     | [data] copytool_in thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:42,262 | INFO     | [job] job monitor thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:42,311 | INFO     | [payload] failed_post thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:42,381 | INFO     | [job] validate thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:42,463 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:42,479 | INFO     | [job] control thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:42,697 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:43,033 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:43,613 | INFO     | [data] copytool_out thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:44,952 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 12:48:14] 2025-10-12 16:47:54,426 | INFO     | [monitor] cgroup control has ended
[2025-10-12 12:48:14] 2025-10-12 16:47:55,768 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140295408064320)>', '<ExcThread(monitor, started 140294704068352)>']
[2025-10-12 12:48:14] 2025-10-12 16:48:00,794 | INFO     | all workflow threads have been joined
[2025-10-12 12:48:14] 2025-10-12 16:48:00,794 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 12:48:14] 2025-10-12 16:48:00,794 | INFO     | traces error code: 0
[2025-10-12 12:48:14] 2025-10-12 16:48:00,794 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 12:48:14] 2025-10-12 16:48:13,229 | INFO     | PID=3596484 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 12:48:14] 2025-10-12 16:48:13,230 | INFO     | .. there are 39 such processes running
[2025-10-12 12:48:14] 2025-10-12 16:48:13,231 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 12:48:14] 2025-10-12 16:48:13,231 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 12:48:14] 2025-10-12 16:48:13,231 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 12:48:14] 2025-10-12 16:48:13,231 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 12:48:14] 2025-10-12 16:48:13,231 | INFO     | [monitor] control thread has ended
[2025-10-12 12:48:14] 2025-10-12 16:48:13,692 [wrapper] ==== pilot stdout END ====
[2025-10-12 12:48:14] 2025-10-12 16:48:13,707 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 12:48:14] 2025-10-12 16:48:13,709 [wrapper] pilotpid: 3596484
[2025-10-12 12:48:14] 2025-10-12 16:48:13,721 [wrapper] Pilot exit status: 0
[2025-10-12 12:48:14] 2025-10-12 16:48:13,798 [wrapper] pandaids: 6839774969
[2025-10-12 12:48:14] 2025-10-12 16:48:13,889 [wrapper] cleanup supervisor_pilot  316308 3596486
[2025-10-12 12:48:14] 2025-10-12 16:48:13,891 [wrapper] Test setup, not cleaning
[2025-10-12 12:48:14] 2025-10-12 16:48:13,902 [wrapper] apfmon messages muted
[2025-10-12 12:48:14] 2025-10-12 16:48:13,904 [wrapper] ==== wrapper stdout END ====
[2025-10-12 12:48:14] 2025-10-12 16:48:13,906 [wrapper] ==== wrapper stderr END ====
[2025-10-12 12:48:14]  *** Error codes and diagnostics ***
[2025-10-12 12:48:14]     "exeErrorCode": 0,
[2025-10-12 12:48:14]     "exeErrorDiag": "",
[2025-10-12 12:48:14]     "pilotErrorCode": 0,
[2025-10-12 12:48:14]     "pilotErrorDiag": "",
[2025-10-12 12:48:14]  *** Listing of results directory ***
[2025-10-12 12:48:14] total 413296
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas    557409 Oct 12 04:37 pilot3.tar.gz
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas      5112 Oct 12 04:46 queuedata.json
[2025-10-12 12:48:14] -rwx------. 1 boincer umatlas     36292 Oct 12 04:48 runpilot2-wrapper.sh
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas       100 Oct 12 09:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 12:48:14] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 12 09:10 run_atlas
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas       105 Oct 12 09:10 job.xml
[2025-10-12 12:48:14] -rw-r--r--. 2 boincer umatlas 219598788 Oct 12 09:10 EVNT.46676267._003550.pool.root.1
[2025-10-12 12:48:14] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 09:10 start_atlas.sh
[2025-10-12 12:48:14] drwxrwx--x. 2 boincer umatlas      4096 Oct 12 09:10 shared
[2025-10-12 12:48:14] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 09:10 input.tar.gz
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas         0 Oct 12 09:10 boinc_lockfile
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas      2550 Oct 12 09:10 pandaJob.out
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas    975512 Oct 12 09:10 agis_schedconf.cvmfs.json
[2025-10-12 12:48:14] drwx------. 5 boincer umatlas      4096 Oct 12 09:10 pilot3
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas      6899 Oct 12 12:38 init_data.xml
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas       530 Oct 12 12:45 boinc_task_state.xml
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas 195410222 Oct 12 12:45 HITS.46676269._074715.pool.root.1
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas      1035 Oct 12 12:46 memory_monitor_summary.json
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas   1560580 Oct 12 12:47 agis_ddmendpoints.agis.ALL.json
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas    464972 Oct 12 12:47 log.46676269._074715.job.log.tgz.1
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas        95 Oct 12 12:47 pilot_heartbeat.json
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas      7780 Oct 12 12:47 heartbeat.json
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas      8192 Oct 12 12:48 boinc_mmap_file
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas        28 Oct 12 12:48 wrapper_checkpoint.txt
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas       823 Oct 12 12:48 pilotlog.txt
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas   1687673 Oct 12 12:48 log.46676269._074715.job.log.1
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas       357 Oct 12 12:48 output.list
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas       620 Oct 12 12:48 runtime_log
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas   2170880 Oct 12 12:48 result.tar.gz
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas       655 Oct 12 12:48 VlSMDmJw6R8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmlEjNDmoIksWn.diag
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas      8704 Oct 12 12:48 runtime_log.err
[2025-10-12 12:48:14] -rw-r--r--. 1 boincer umatlas     21289 Oct 12 12:48 stderr.txt
[2025-10-12 12:48:14] HITS file was successfully produced:
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas 195410222 Oct 12 12:45 shared/HITS.pool.root.1
[2025-10-12 12:48:14]  *** Contents of shared directory: ***
[2025-10-12 12:48:14] total 407988
[2025-10-12 12:48:14] -rw-r--r--. 2 boincer umatlas 219598788 Oct 12 09:10 ATLAS.root_0
[2025-10-12 12:48:14] -rw-r--r--. 2 boincer umatlas     15120 Oct 12 09:10 start_atlas.sh
[2025-10-12 12:48:14] -rw-r--r--. 2 boincer umatlas    569681 Oct 12 09:10 input.tar.gz
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas 195410222 Oct 12 12:45 HITS.pool.root.1
[2025-10-12 12:48:14] -rw-------. 1 boincer umatlas   2170880 Oct 12 12:48 result.tar.gz
12:48:35 (3591682): run_atlas exited; CPU time 31603.806868
12:48:35 (3591682): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN